View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_43 (Length: 245)
Name: NF2880_low_43
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31662715 - 31662482
Alignment:
| Q |
1 |
caagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttcaattctctctacatgatcacc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662715 |
caagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttcaattctctctacatgatcacc |
31662616 |
T |
|
| Q |
101 |
atcttagctctaactccttcaaaccatgctaggatcacttgaatgaacttcttaggagaggaagaatgagagaacaagttgtttagaggttctacttctt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662615 |
atcttagctctaactccttcaaaccatgctaggatcacttgaatgaacttcttaggagaggaagaatgagagaacaagttgtttagaggttctacttctt |
31662516 |
T |
|
| Q |
201 |
ccataactcaagcaaaacacataagcatgatgat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
31662515 |
ccataactcaagcaaaacacataagcatgatgat |
31662482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31330591 - 31330358
Alignment:
| Q |
1 |
caagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttcaattctctctacatgatcacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31330591 |
caagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttcaattctctttacatgatcacc |
31330492 |
T |
|
| Q |
101 |
atcttagctctaactccttcaaaccatgctaggatcacttgaatgaacttcttaggagaggaagaatgagagaacaagttgtttagaggttctacttctt |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31330491 |
atcttagctctaacttcttcaaaccatgctaggatcacttgaatgaacttcttaggagaggaagaatgagagaacaagttgtttagaggttctacttctt |
31330392 |
T |
|
| Q |
201 |
ccataactcaagcaaaacacataagcatgatgat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
31330391 |
ccataactcaagcaaaacacataagcatgatgat |
31330358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31337312 - 31337079
Alignment:
| Q |
1 |
caagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttcaattctctctacatgatcacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
31337312 |
caagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttcaattctctttacatgatcacc |
31337213 |
T |
|
| Q |
101 |
atcttagctctaactccttcaaaccatgctaggatcacttgaatgaacttcttaggagaggaagaatgagagaacaagttgtttagaggttctacttctt |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31337212 |
atcttagctctaacttcttcaaaccatgctaggatcacttgaatgaacttcttaggagaggaagaatgagagaacaagttgtttagaggttctacttctt |
31337113 |
T |
|
| Q |
201 |
ccataactcaagcaaaacacataagcatgatgat |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
31337112 |
ccataactcaagcaaaacacataagcatgatgat |
31337079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 31316287 - 31316352
Alignment:
| Q |
7 |
aaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca |
71 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||| |||||| |
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| T |
31316287 |
aaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca |
31316352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 153
Target Start/End: Complemental strand, 34455266 - 34455146
Alignment:
| Q |
36 |
tcttgctcaagcttgcctcta--gctcaaaatacaacacaaa-cttcaattctctctacatgatcaccatcttagctctaactccttcaaaccatgctag |
132 |
Q |
| |
|
|||||||||||||| ||||| ||| ||| |||||||||| |||||||| || ||||||||| |||||||||||||||||| |||||| ||||||||| |
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|
| T |
34455266 |
tcttgctcaagcttatctctaatgcttcaaacacaacacaaagcttcaattttcactacatgattaccatcttagctctaacttcttcaacccatgctag |
34455167 |
T |
|
| Q |
133 |
gatcacttgaatgaacttctt |
153 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
34455166 |
aatcacttgaatgaatttctt |
34455146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 34150035 - 34149932
Alignment:
| Q |
1 |
caagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaac-acaaacttcaattctctctacatgatc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| || ||| |||||||||||| || |||||||| |
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| T |
34150035 |
caagccaaaccctagctcttggtgtcttgcctcaatcttgctcaagcttgcctctaatgctcaaagtataactccaaacttcaatttcctttacatgatt |
34149936 |
T |
|
| Q |
98 |
acca |
101 |
Q |
| |
|
|||| |
|
|
| T |
34149935 |
acca |
34149932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5248742 - 5248687
Alignment:
| Q |
1 |
caagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta |
56 |
Q |
| |
|
|||||||||||||| |||||||||||||| || ||||||||| ||||||||||||| |
|
|
| T |
5248742 |
caagccaaaccctatctcttggtgtcttgactcaatcttgctaaagcttgcctcta |
5248687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 18112737 - 18112802
Alignment:
| Q |
7 |
aaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca |
71 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||| |||||| |
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|
| T |
18112737 |
aaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca |
18112802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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