View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880_low_45 (Length: 243)

Name: NF2880_low_45
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880_low_45
NF2880_low_45
[»] chr4 (3 HSPs)
chr4 (17-242)||(6743980-6744205)
chr4 (19-160)||(28021951-28022090)
chr4 (27-99)||(14207708-14207780)
[»] chr7 (4 HSPs)
chr7 (17-151)||(4411466-4411594)
chr7 (145-242)||(4433503-4433600)
chr7 (53-115)||(42302835-42302897)
chr7 (64-157)||(27964648-27964740)
[»] chr6 (5 HSPs)
chr6 (20-96)||(13154370-13154446)
chr6 (20-96)||(13159226-13159302)
chr6 (32-77)||(22997595-22997640)
chr6 (32-77)||(23790763-23790808)
chr6 (32-76)||(18144031-18144075)
[»] chr8 (3 HSPs)
chr8 (19-160)||(43720525-43720664)
chr8 (19-99)||(36243551-36243630)
chr8 (64-157)||(14836949-14837041)
[»] chr3 (2 HSPs)
chr3 (25-99)||(14956649-14956723)
chr3 (64-162)||(32075972-32076069)
[»] chr2 (2 HSPs)
chr2 (64-157)||(32280552-32280644)
chr2 (27-99)||(31407926-31407998)
[»] chr5 (1 HSPs)
chr5 (53-104)||(2369072-2369123)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 6743980 - 6744205
Alignment:
Q  17 catttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6743980 catttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattt 6744079  T
Q  117 tctttgttcccgttacattcttgaatgaattcttttcttttattttctttgttaattacactttcagtactgtcatgtgagagatttagaaggaataaaa 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6744080 tctttgttgccgttacattcttgaatgaattcttttcttttattttctttgttaattacactttcagtactgtcatgtgagagatttagaaggaataaaa 6744179  T
Q  217 tatgcagcttgattattatttttatc 242  Q
    ||||||||||||||||||||||||||    
T  6744180 tatgcagcttgattattatttttatc 6744205  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 28021951 - 28022090
Alignment:
Q  19 tttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttc 118  Q
    ||||||| |||||||||||  ||||||  |||| ||||| || ||||||  |||| ||| ||||||||||||  || ||||||||| ||||  |||| ||    
T  28021951 tttacatgtttgattgaatgcctcattggattttacttttacaactcat--tcttcttgggttacaaatgtgaattctagatttaggctttggaattgtc 28022048  T
Q  119 tttgttcccgttacattcttgaatgaattcttttcttttatt 160  Q
    |   || ||||||||||||| |||||||||||||||||||||    
T  28022049 tcaatttccgttacattcttcaatgaattcttttcttttatt 28022090  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 14207780 - 14207708
Alignment:
Q  27 tttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttaga 99  Q
    |||||||||||  ||| ||  |||||||||||| ||||||||| ||||||  |||||||  ||||||||||||    
T  14207780 tttgattgaatgcctctttgaatttcactttcaacactcatgtcctttttttgttacaaccgtgtgttttaga 14207708  T

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Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 4411466 - 4411594
Alignment:
Q  17 catttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattt 116  Q
    ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4411466 catttacatctttgattgaatatctcattatatttc------accactcatgttctttttgggttacaaatgtgtgttttagatttagactttaaaattt 4411559  T
Q  117 tctttgttcccgttacattcttgaatgaattcttt 151  Q
    |||||||| | ||||||||||||||||||||||||    
T  4411560 tctttgtttctgttacattcttgaatgaattcttt 4411594  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 4433503 - 4433600
Alignment:
Q  145 attcttttcttttattttctttgttaattacactttcagtactgtcatgtgagagatttagaaggaataaaatatgcagcttgattattatttttatc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4433503 attcttttcttttattttctttgttaattacactttcagtactgtcatgtgagagatttagaaggaataaaatatgcagcttgattattatttttatc 4433600  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 42302897 - 42302835
Alignment:
Q  53 actttcaccactcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaatt 115  Q
    ||||| || |||||||||||||||| ||||||||||||||||||| |||||| |||| |||||    
T  42302897 acttttacaactcatgttctttttgggttacaaatgtgtgttttatatttaggctttgaaatt 42302835  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 27964740 - 27964648
Alignment:
Q  64 tcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttctttt 157  Q
    |||||||||||||| ||| ||||||| ||||||||| |||| |||||||||| |||    |||  |||||||||||||||||||||||| ||||    
T  27964740 tcatgttctttttgggtttcaaatgt-tgttttagaattaggctttaaaattgtctccactccttttacattcttgaatgaattcttttatttt 27964648  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 13154446 - 13154370
Alignment:
Q  20 ttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgtttt 96  Q
    |||||| |||||||||||  ||||||  |||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  13154446 ttacatgtttgattgaatgcctcattggatttcactttcaacgctcatgttctttttgtgttacaaatgtgtgtttt 13154370  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 13159302 - 13159226
Alignment:
Q  20 ttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgtttt 96  Q
    |||||| |||||||||||  ||||||  |||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  13159302 ttacatgtttgattgaatgcctcattggatttcactttcaacgctcatgttctttttgtgttacaaatgtgtgtttt 13159226  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 22997595 - 22997640
Alignment:
Q  32 ttgaatatctcattatatttcactttcaccactcatgttctttttg 77  Q
    ||||||||||||||  |||| ||||||||||||||| |||||||||    
T  22997595 ttgaatatctcattggatttaactttcaccactcatattctttttg 22997640  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 23790808 - 23790763
Alignment:
Q  32 ttgaatatctcattatatttcactttcaccactcatgttctttttg 77  Q
    ||||||||||||||  |||| ||||||||||||||| |||||||||    
T  23790808 ttgaatatctcattggatttaactttcaccactcatattctttttg 23790763  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 18144031 - 18144075
Alignment:
Q  32 ttgaatatctcattatatttcactttcaccactcatgttcttttt 76  Q
    ||||||||||||||  |||| ||||||||||||||| ||||||||    
T  18144031 ttgaatatctcattggatttaactttcaccactcatattcttttt 18144075  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 43720525 - 43720664
Alignment:
Q  19 tttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttc 118  Q
    ||||||| |||||||||||  ||||||  |||| ||||| || ||||||  |||| ||| |||||||||||| ||| ||||||||| ||||  |||| ||    
T  43720525 tttacatgtttgattgaatgcctcattggattttacttttacaactcat--tcttcttgggttacaaatgtgagttctagatttaggctttggaattgtc 43720622  T
Q  119 tttgttcccgttacattcttgaatgaattcttttcttttatt 160  Q
    |   || ||| ||||||||| |||||||||||||||||||||    
T  43720623 tcaatttccgctacattcttcaatgaattcttttcttttatt 43720664  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 36243630 - 36243551
Alignment:
Q  19 tttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttaga 99  Q
    ||||||| |||||||||||  ||||||  |||||||||||| ||||||||  ||||| | |||||||||||||||||||||    
T  36243630 tttacatgtttgattgaatgcctcattg-atttcactttcaacactcatgcccttttcgtgttacaaatgtgtgttttaga 36243551  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 14836949 - 14837041
Alignment:
Q  64 tcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttctttt 157  Q
    |||||||||||||| ||| ||||||| ||||||||| |||| |||||||||| |||    |||  |||||||||| ||||||||||||| ||||    
T  14836949 tcatgttctttttgggtttcaaatgt-tgttttagaattaggctttaaaattgtctccactccttttacattcttcaatgaattcttttatttt 14837041  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 14956723 - 14956649
Alignment:
Q  25 tctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttaga 99  Q
    ||||||||||||| |||||||   ||||||||||| ||||||||  ||||||| |||||||||||||||||||||    
T  14956723 tctttgattgaatgtctcattgattttcactttcaacactcatgccctttttgcgttacaaatgtgtgttttaga 14956649  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 32076069 - 32075972
Alignment:
Q  64 tcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttcttttatttt 162  Q
    |||||||||||||  |||||||||| |||||||||| |||| |||| ||||| |||    |||  |||||||||| ||||||||||||| |||| ||||    
T  32076069 tcatgttctttttaggttacaaatg-gtgttttagaattaggctttgaaattatctccactccttttacattctttaatgaattcttttattttctttt 32075972  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 32280552 - 32280644
Alignment:
Q  64 tcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttctttt 157  Q
    |||||||||||||| ||||||||||| ||||||||| |||| |||||||||| |||    |||  |||||||||| ||||||||||||| ||||    
T  32280552 tcatgttctttttgggttacaaatgt-tgttttagaattaggctttaaaattgtctccactccttttacattcttcaatgaattcttttatttt 32280644  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 31407998 - 31407926
Alignment:
Q  27 tttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttaga 99  Q
    |||||||||||  ||| ||  |||||||||||| ||||||||| ||||||  |||||||  ||||||||||||    
T  31407998 tttgattgaatgcctctttgaatttcactttcaacactcatgtcctttttttgttacaaccgtgtgttttaga 31407926  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 2369123 - 2369072
Alignment:
Q  53 actttcaccactcatgttctttttgagttacaaatgtgtgttttagatttag 104  Q
    ||||| || |||||||||||||||| |||||||||||| |||||| ||||||    
T  2369123 acttttacaactcatgttctttttgggttacaaatgtgcgttttatatttag 2369072  T

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