View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_47 (Length: 242)
Name: NF2880_low_47
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 4177857 - 4177641
Alignment:
| Q |
18 |
ctctgatatattcaactcctccagtatcagtcaataatcatttccataatccttgccctaattttttgtcagctcccaacacttgttagaattaatcaat |
117 |
Q |
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| T |
4177857 |
ctctgatatattcaactcctccagtatcagtcaataatcatttccataatccttgccctaattttttgtcagctcccaacacttgttagaattaatcaat |
4177758 |
T |
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| Q |
118 |
gagcagtgacataaatgttttagacaccttgtttagcaagtgttgtagacaaaaatattgtatcaaattatgtaatattatgtctgggttttggaatttt |
217 |
Q |
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| T |
4177757 |
gagcagtgacataaatgttttagacaccttgtttagcaagtgttgtagacaaaaatattgtatcaaattatgtaatattatgtctgggttttggaatttt |
4177658 |
T |
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| Q |
218 |
tgtgtctatttcttctc |
234 |
Q |
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||||||||||||||||| |
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| T |
4177657 |
tgtgtctatttcttctc |
4177641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 4078192 - 4078409
Alignment:
| Q |
18 |
ctctgatatattcaactcctccagtat----cagtcaataatcatttccataatccttgccctaattttttgtcagctcccaacacttgttagaattaat |
113 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4078192 |
ctctgatatattcaactcctccagtatatatcagtcaataatcatttccataatccttgccctaattttttgtcagctcccaacacttgttacaattaat |
4078291 |
T |
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| Q |
114 |
caatgagcagtgacataaatgttttagacaccttgtttagcaagtgttgtagacaaaaatattgtatcaaatt-atgtaatatta--tgtctgggttttg |
210 |
Q |
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|||| |||||||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
4078292 |
caataagcagtgacagaaatgttttagacaccttgtttacctagtgttgtagacagaaatattgtatcaaattgatgtaatattatttgtttgggttttg |
4078391 |
T |
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| Q |
211 |
gaatttttgtgtctattt |
228 |
Q |
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|||||||||||| ||||| |
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| T |
4078392 |
gaatttttgtgtgtattt |
4078409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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