View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_49 (Length: 240)
Name: NF2880_low_49
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 37792828 - 37792604
Alignment:
| Q |
5 |
agctgtgaattttgatatctatgttccttcggatgagacatttagccccaaaaaattgaacaagttcaaatcaaattctgttcataccataaaacatttt |
104 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37792828 |
agctgtgaattttgatatctatgttccttcagatgagacatttagccccaaaaaattgaacaagttcaaatcaaattctgttcataccataaaacatttt |
37792729 |
T |
|
| Q |
105 |
ctatcatcatcataagcagatcattacctcaacaatagtaaccaaacattagagagatggattagagataacttaagaagccttctatcggctaagcact |
204 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37792728 |
ctatcatcatcataggcagatcattacctcaacaatagtaaccaaacattagagagatggattagagataacttaagaagccttctatcagctaagcact |
37792629 |
T |
|
| Q |
205 |
tgaagaaaatcgtcaacaatttcat |
229 |
Q |
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||||||||||||||||||||||||| |
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| T |
37792628 |
tgaagaaaatcgtcaacaatttcat |
37792604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 2917862 - 2917754
Alignment:
| Q |
5 |
agctgtgaattttgatatctatgttccttcggatgagacatttagccccaaaaaattgaacaagttcaaatcaaattctgttcataccataaaacatttt |
104 |
Q |
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|||| ||||||||| ||||||||||||||| ||||||| ||||| ||| | || |||||| |||||||||||||||||||| |||||||| | ||||||| |
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| T |
2917862 |
agctttgaattttgctatctatgttccttcagatgagaaatttaaccctagaatattgaagaagttcaaatcaaattctgtccataccatgatacatttt |
2917763 |
T |
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| Q |
105 |
ctatcatca |
113 |
Q |
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||||||||| |
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| T |
2917762 |
ctatcatca |
2917754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 3017099 - 3017167
Alignment:
| Q |
15 |
tttgatatctatgttccttcggatgagacatttagccccaaaaaattgaacaagttcaaatcaaattct |
83 |
Q |
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| T |
3017099 |
tttgatatatatgttccttcagatgagatatttagccctaacaaattgaaggagatcaaatcaaattct |
3017167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 28021399 - 28021224
Alignment:
| Q |
5 |
agctgtgaattttgatatctatgttccttcggatgagacatttagccccaaaaaattgaacaagttcaaatcaaattctgttcataccataaaacatttt |
104 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28021399 |
agctgtgaattttgatatctatgttccttcggatgagatatttagcctcaaaaaattgaagaagttcaaatcaaattctgttcataccataaaacatttt |
28021300 |
T |
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| Q |
105 |
ctatcatcatcataagcagatcattacctcaacaatagtaaccaaacattagagagatggattagagataacttaagaa |
183 |
Q |
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||||||||| | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28021299 |
ctatcatcag---aggcagatcattacctcaacaatcataaccaaacgttagagagatggattagagataacttaagaa |
28021224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 18360923 - 18360994
Alignment:
| Q |
12 |
aattttgatatctatgttccttcggatgagacatttagccccaaaaaattgaacaagttcaaatcaaattct |
83 |
Q |
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||||||||||| ||||||||||| ||||||| ||||||||| || |||||||| || |||||||||||||| |
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| T |
18360923 |
aattttgatatatatgttccttcagatgagatatttagccctaacaaattgaaggagatcaaatcaaattct |
18360994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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