View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_5 (Length: 630)
Name: NF2880_low_5
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 179 - 589
Target Start/End: Original strand, 13019259 - 13019654
Alignment:
| Q |
179 |
cactttcacttatacaacctcattcccttctcccaaaaccaacacaaccaatttcaaatgcacaccccccaaacgaaacaattccatcaacactcaaaac |
278 |
Q |
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| T |
13019259 |
cactttcacttatacaacctcattcacttctcccaaaaccaacaccaccaatttcaaattcacaccccccaaacgaaacaattccatcaacactcaaaac |
13019358 |
T |
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| Q |
279 |
tttcttccaacaacgcagtaatgatctgtcatcagcaatctccagaaccatcacatcgttaaaacactcaatcgacgataaaaatgagccgtcgtttagt |
378 |
Q |
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| T |
13019359 |
tttcttccaacaacgcagtaatgatctgtcatcagcaatctccagaaccatcacatcgttaaaacactctatagacgataaaaatgag------------ |
13019446 |
T |
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| Q |
379 |
gagtttaatgatgtgactgagttcaatctctccggtttaaaagtagtagtaactactcctgcttttcccaacgacagacttacgttgggaaaagtacaaa |
478 |
Q |
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| T |
13019447 |
---tttaacgatgtgactgagttcaatctctccggtttaaaagtagtagtaactactcctgttttttccaacgacagagtgtcgttgggaaaagtacaaa |
13019543 |
T |
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| Q |
479 |
ttacaatgttttcaaaatcgaactgcagagactgttctgcagttcgaagatttttcaaagaaagaagattgaaattcatcgaaatcaacattgatgtata |
578 |
Q |
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| T |
13019544 |
taacaatgttttcaaaatcgaactgcagagactgttctgcagttcgaagatttttcaaagaaagacgattgaaattcatcgaaatcaacattgatgtgta |
13019643 |
T |
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