View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_52 (Length: 232)
Name: NF2880_low_52
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_52 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 37 - 232
Target Start/End: Original strand, 48669924 - 48670119
Alignment:
| Q |
37 |
attattaataaaattacaaaaatggcattgaaatatatataatatgattnnnnnnntctccatccactttcttctcaatttggagagagctcaaaaaggt |
136 |
Q |
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| T |
48669924 |
attattcataaaagtacaaaaatggcattgaaatatatataatatgattaaaaaaatctccacccactttcctctcaatttggagagaactcaaaaaggt |
48670023 |
T |
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| Q |
137 |
gtgggtcccatattattttattctctcttcacaatttcattgatgttccaaacaagagaagttgtctgattctcttcaatttctctcgcatgtctt |
232 |
Q |
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| T |
48670024 |
gtgggtcccacattattttattctctcttcacagtttcattgatgttccaaacaagagaagttgtttgtttctcttcaatttctctcgcatgtctt |
48670119 |
T |
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Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 1509266 - 1509086
Alignment:
| Q |
54 |
aaaaatggcattgaaatatata----taatatgattnnnnnnntctccatccactttcttctcaatttggagagagctcaaaaaggtgtgggtcccatat |
149 |
Q |
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| T |
1509266 |
aaaaatgccattgaaatatataataataatatgattaaaaaaatctccacccacttccttctcaatttggagagaactcaaaaaggtatgggctccacag |
1509167 |
T |
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| Q |
150 |
tattttattctctcttcacaatttcattgatgttccaaacaagagaagttgtctgattctcttcaatttctctcgcatgtc |
230 |
Q |
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| T |
1509166 |
tattttattctctcttcacaatttcattgatgttccaaacaagagaagttgcctgtttctcttcaatttctctcgcatgtc |
1509086 |
T |
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