View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_8 (Length: 580)
Name: NF2880_low_8
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_8 |
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| [»] scaffold0140 (5 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 37228 - 36933
Alignment:
| Q |
1 |
tggtccaaaggaagcaactcagaaccagccattgccac-atgactttattgatgacacaactcatgttattactggtttgttgaaatgtcaaaagaa-ta |
98 |
Q |
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| T |
37228 |
tggtctaaaggaagcaactcagaaccagccattgccaccatcaaatt-ttgatgacacaactgatgttattactggtttgttgaaatgtcaaaagaaata |
37130 |
T |
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| Q |
99 |
ttgcaaaagtt-caaggcaagaaggtcatgactgttgggggtccatcagagactcaagctgaagcaatgttgagagacctgaagatgcttccaccagagg |
197 |
Q |
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| T |
37129 |
ttgcaaaagttacaaggcaagaaggtcatgactgttgggggtccatcagagagtcaagctgaagcaatgttgagagacctgaagatgcttccaccagagg |
37030 |
T |
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| Q |
198 |
aactagagaaggttacaagggagttggtgacaggcctagtgaattggaatgagaatattcacaagaacaaccaagcaaaaggaactgatggggagga |
294 |
Q |
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| T |
37029 |
aactagaaaaggttacaagggagttggtcacaggtctagtgaattggaatgagaatattcagaagaacaaccaagcaaaaggaactgatgggaagga |
36933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 365 - 526
Target Start/End: Complemental strand, 36900 - 36735
Alignment:
| Q |
365 |
ttaatgtttaagttttactttactttttggctatgaacctattagttgcactatgatgcttatgttgaaactgtaa-tttggttagc-acc--nnnnnnn |
460 |
Q |
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| T |
36900 |
ttaatgtttaagttttactttactttttggctatgaacctattagttgcactatgatgcttatgttgaaactgtaattttggttagctaccttttttttt |
36801 |
T |
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| Q |
461 |
nggatgttttggtgctattggacctgttatgttatgtttttgtacattatgatgtttgtaatgacc |
526 |
Q |
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| T |
36800 |
tggatgttttggtgctattggacctgttatgttatgttttggtacattatgatgttggtaatgacc |
36735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 502 - 580
Target Start/End: Complemental strand, 36704 - 36626
Alignment:
| Q |
502 |
gtacattatgatgtttgtaatgaccattttggtgttatgtcttggtacattatggtgttagtaatgaccattttggtgc |
580 |
Q |
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| T |
36704 |
gtacattatggtgtttgtaatgaccattttggtgttatgtcttggtacattatggtgttagtaatgaccattttggtgc |
36626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 543 - 579
Target Start/End: Complemental strand, 36707 - 36671
Alignment:
| Q |
543 |
ttggtacattatggtgttagtaatgaccattttggtg |
579 |
Q |
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| T |
36707 |
ttggtacattatggtgtttgtaatgaccattttggtg |
36671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 36672 - 36627
Alignment:
| Q |
490 |
tgttatgtttttgtacattatgatgtttgtaatgaccattttggtg |
535 |
Q |
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| T |
36672 |
tgttatgtcttggtacattatggtgttagtaatgaccattttggtg |
36627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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