View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880_low_9 (Length: 544)

Name: NF2880_low_9
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880_low_9
NF2880_low_9
[»] chr6 (21 HSPs)
chr6 (24-523)||(8850473-8850972)
chr6 (135-215)||(28112172-28112252)
chr6 (34-160)||(12988432-12988557)
chr6 (122-215)||(31071941-31072033)
chr6 (132-212)||(6512892-6512972)
chr6 (135-215)||(28108196-28108276)
chr6 (135-167)||(2378914-2378946)
chr6 (135-167)||(3597189-3597221)
chr6 (135-167)||(11401941-11401973)
chr6 (135-167)||(13004873-13004905)
chr6 (135-167)||(26942842-26942874)
chr6 (135-167)||(28665671-28665703)
chr6 (135-167)||(30655128-30655160)
chr6 (137-212)||(2845941-2846016)
chr6 (136-167)||(5259621-5259652)
chr6 (34-160)||(13021561-13021686)
chr6 (135-165)||(11247448-11247478)
chr6 (135-167)||(10289657-10289689)
chr6 (135-167)||(11126103-11126135)
chr6 (135-167)||(11188323-11188355)
chr6 (135-167)||(22561571-22561603)
[»] chr3 (40 HSPs)
chr3 (34-437)||(27298756-27299165)
chr3 (34-267)||(27308315-27308546)
chr3 (49-225)||(27308887-27309063)
chr3 (114-316)||(8099174-8099373)
chr3 (34-215)||(18542270-18542452)
chr3 (34-160)||(11636608-11636733)
chr3 (31-167)||(22360214-22360349)
chr3 (135-215)||(35751174-35751254)
chr3 (132-167)||(29344266-29344301)
chr3 (34-167)||(45896148-45896281)
chr3 (31-212)||(22993989-22994168)
chr3 (135-188)||(7486317-7486370)
chr3 (135-168)||(27091661-27091694)
chr3 (135-188)||(30690482-30690535)
chr3 (135-215)||(47051215-47051295)
chr3 (135-167)||(2873332-2873364)
chr3 (135-167)||(3840284-3840316)
chr3 (135-167)||(11190294-11190326)
chr3 (135-167)||(20729041-20729073)
chr3 (135-167)||(24125267-24125299)
chr3 (135-167)||(24128544-24128576)
chr3 (135-167)||(25584455-25584487)
chr3 (135-167)||(32287718-32287750)
chr3 (135-167)||(41976783-41976815)
chr3 (135-167)||(43926603-43926635)
chr3 (135-167)||(47054693-47054725)
chr3 (135-167)||(50461943-50461975)
chr3 (135-167)||(54723509-54723541)
chr3 (135-188)||(30220403-30220456)
chr3 (239-288)||(6030457-6030506)
chr3 (31-167)||(22370117-22370252)
chr3 (45-105)||(282495-282555)
chr3 (439-471)||(7167804-7167836)
chr3 (135-167)||(17040416-17040448)
chr3 (135-167)||(19301899-19301931)
chr3 (135-167)||(19305083-19305115)
chr3 (135-167)||(22783360-22783392)
chr3 (135-167)||(22787724-22787756)
chr3 (135-167)||(28008464-28008496)
chr3 (135-167)||(52309952-52309984)
[»] scaffold0187 (1 HSPs)
scaffold0187 (45-310)||(31249-31514)
[»] chr1 (17 HSPs)
chr1 (45-310)||(37907563-37907828)
chr1 (45-215)||(7635281-7635451)
chr1 (34-215)||(27332077-27332258)
chr1 (45-167)||(34066758-34066880)
chr1 (35-188)||(34732667-34732819)
chr1 (121-215)||(6071348-6071441)
chr1 (135-215)||(27536693-27536773)
chr1 (135-167)||(20398537-20398569)
chr1 (135-167)||(21018873-21018905)
chr1 (135-167)||(23022331-23022363)
chr1 (135-167)||(28110741-28110773)
chr1 (135-167)||(31204522-31204554)
chr1 (135-167)||(37184271-37184303)
chr1 (135-167)||(41058709-41058741)
chr1 (135-167)||(45961152-45961184)
chr1 (135-165)||(45941102-45941132)
chr1 (135-167)||(11668433-11668465)
[»] scaffold0034 (1 HSPs)
scaffold0034 (34-311)||(48709-48986)
[»] chr2 (28 HSPs)
chr2 (33-306)||(35521671-35521941)
chr2 (215-298)||(11187611-11187694)
chr2 (46-188)||(22630486-22630627)
chr2 (122-215)||(31427938-31428030)
chr2 (135-215)||(9966712-9966792)
chr2 (135-215)||(33310283-33310363)
chr2 (135-215)||(45453491-45453571)
chr2 (135-215)||(45456778-45456858)
chr2 (135-188)||(43723345-43723398)
chr2 (135-167)||(8888300-8888332)
chr2 (135-167)||(9185832-9185864)
chr2 (135-167)||(9189061-9189093)
chr2 (135-167)||(11348304-11348336)
chr2 (135-167)||(13972302-13972334)
chr2 (135-167)||(22020733-22020765)
chr2 (135-167)||(25960097-25960129)
chr2 (135-167)||(27266453-27266485)
chr2 (135-167)||(30190001-30190033)
chr2 (135-167)||(38015183-38015215)
chr2 (135-167)||(40781137-40781169)
chr2 (135-167)||(42369119-42369151)
chr2 (114-181)||(6298117-6298183)
chr2 (135-165)||(5105393-5105423)
chr2 (138-168)||(24234759-24234789)
chr2 (141-215)||(31430104-31430178)
chr2 (135-165)||(43208298-43208328)
chr2 (135-168)||(24238031-24238064)
chr2 (139-167)||(37280089-37280117)
[»] chr5 (22 HSPs)
chr5 (35-198)||(563530-563692)
chr5 (45-222)||(31575045-31575222)
chr5 (34-130)||(18765947-18766044)
chr5 (34-154)||(21914818-21914937)
chr5 (135-215)||(17664187-17664267)
chr5 (221-310)||(18766058-18766147)
chr5 (135-215)||(7624737-7624817)
chr5 (135-215)||(20055409-20055489)
chr5 (34-167)||(41877071-41877204)
chr5 (135-188)||(26896011-26896064)
chr5 (135-188)||(26753109-26753162)
chr5 (135-167)||(7270699-7270731)
chr5 (135-167)||(14016546-14016578)
chr5 (135-167)||(18952376-18952408)
chr5 (135-167)||(22129948-22129980)
chr5 (135-167)||(30066025-30066057)
chr5 (135-167)||(33551804-33551836)
chr5 (135-167)||(34831446-34831478)
chr5 (135-167)||(41306934-41306966)
chr5 (132-167)||(18239900-18239935)
chr5 (135-167)||(4099929-4099961)
chr5 (135-167)||(18032141-18032173)
[»] chr7 (17 HSPs)
chr7 (34-302)||(24917731-24917998)
chr7 (35-300)||(2090144-2090408)
chr7 (135-215)||(14683856-14683936)
chr7 (122-215)||(6603080-6603172)
chr7 (34-167)||(7227197-7227330)
chr7 (112-167)||(18562923-18562977)
chr7 (135-213)||(11398438-11398516)
chr7 (135-167)||(9405927-9405959)
chr7 (135-167)||(9865139-9865171)
chr7 (135-167)||(17730484-17730516)
chr7 (121-215)||(13842262-13842355)
chr7 (122-167)||(16165418-16165462)
chr7 (122-167)||(48645144-48645188)
chr7 (135-167)||(4596421-4596453)
chr7 (135-167)||(4695194-4695226)
chr7 (135-167)||(23225318-23225350)
chr7 (135-167)||(23234471-23234503)
[»] scaffold0233 (1 HSPs)
scaffold0233 (34-212)||(9575-9753)
[»] scaffold0045 (1 HSPs)
scaffold0045 (135-215)||(89404-89484)
[»] chr8 (12 HSPs)
chr8 (135-222)||(7944352-7944439)
chr8 (135-215)||(36711063-36711143)
chr8 (122-167)||(22174319-22174363)
chr8 (135-167)||(12582688-12582720)
chr8 (135-167)||(16953456-16953488)
chr8 (135-167)||(18824802-18824834)
chr8 (135-167)||(18826295-18826327)
chr8 (135-188)||(2560248-2560301)
chr8 (135-167)||(5614135-5614167)
chr8 (135-167)||(5980720-5980752)
chr8 (135-167)||(30784610-30784642)
chr8 (139-167)||(38248811-38248839)
[»] scaffold0002 (1 HSPs)
scaffold0002 (135-212)||(118854-118931)
[»] chr4 (32 HSPs)
chr4 (31-167)||(34018085-34018220)
chr4 (135-215)||(15405492-15405572)
chr4 (135-215)||(56195161-56195241)
chr4 (31-167)||(27691447-27691583)
chr4 (34-92)||(37740069-37740126)
chr4 (135-188)||(15436877-15436930)
chr4 (31-92)||(33493998-33494059)
chr4 (122-215)||(33926601-33926693)
chr4 (122-167)||(34320313-34320357)
chr4 (122-167)||(44809351-44809395)
chr4 (122-215)||(46955874-46955966)
chr4 (135-167)||(15163874-15163906)
chr4 (136-188)||(15430264-15430316)
chr4 (135-167)||(19820410-19820442)
chr4 (135-167)||(19827172-19827204)
chr4 (135-167)||(24150354-24150386)
chr4 (135-167)||(27677462-27677494)
chr4 (135-167)||(29324507-29324539)
chr4 (135-167)||(38283896-38283928)
chr4 (135-167)||(39501330-39501362)
chr4 (135-167)||(40903491-40903523)
chr4 (135-167)||(44164465-44164497)
chr4 (135-167)||(48637187-48637219)
chr4 (135-167)||(52006938-52006970)
chr4 (135-167)||(52531343-52531375)
chr4 (135-167)||(53094189-53094221)
chr4 (135-166)||(8877909-8877940)
chr4 (135-165)||(48415937-48415967)
chr4 (137-167)||(56198535-56198565)
chr4 (135-212)||(8448950-8449027)
chr4 (139-188)||(48014459-48014508)
chr4 (135-167)||(12782587-12782619)
[»] scaffold1684 (1 HSPs)
scaffold1684 (135-215)||(48-128)
[»] scaffold0250 (1 HSPs)
scaffold0250 (132-167)||(19078-19113)
[»] scaffold0757 (1 HSPs)
scaffold0757 (135-167)||(5035-5067)
[»] scaffold0427 (1 HSPs)
scaffold0427 (135-167)||(4196-4228)
[»] scaffold0024 (1 HSPs)
scaffold0024 (135-167)||(84923-84955)
[»] scaffold0520 (2 HSPs)
scaffold0520 (135-163)||(4387-4415)
scaffold0520 (135-163)||(8626-8654)
[»] scaffold0126 (1 HSPs)
scaffold0126 (135-167)||(82-114)


Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 24 - 523
Target Start/End: Original strand, 8850473 - 8850972
Alignment:
Q  24 aatctataaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcaga 123  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8850473 aatctataaatattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatgtttcaaacaggttacatcaga 8850572  T
Q  124 ttcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactat 223  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850573 ttcatcttcaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactat 8850672  T
Q  224 gagtgggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaacaggttaatagga 323  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8850673 gagagggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtcttttagatctccaaaattaagaacccttatttctaaaacaggttaatagga 8850772  T
Q  324 aattcctgtgatcaaaatcgtgtcacaattctcagtaatcgtgccacaattccatctctaaacctaaattcctgctcgaaccatcttcaaaatcgtgtca 423  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850773 aattcatgtgatcaaaatcgtgtcacaattctcagtaatcgtgccacaattccatctctaaacctaaattcctgctcgaaccatcttcaaaatcgtgtca 8850872  T
Q  424 cgcattacaaaatcatgaaattgtgtcacgatgccaaaatcatgtcaccgtgcaacaatttcttgttgttcatattttattacttttcacacccctggtt 523  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850873 cgcattacaaaatcataaaattgtgtcacaatgccaaaatcatgtcaccgtgcaacaatttcttgttgttcatattttattacttttcacacccctggtt 8850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 28112172 - 28112252
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||||||| ||||| |||||||||||    
T  28112172 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaattaaagaattaaaacatacataaa 28112252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 12988432 - 12988557
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctcc 132  Q
    |||||| || |||||||||||||||||||||||| ||||||| ||  ||||||| |||| ||| | ||  |||||  ||| |||||||||| |||||||     
T  12988432 cattaagaaatattgaattgaataaaactagattgatattcacaat-aatagagcttcacagcaacatggttcaattagggttacatcagaatcatctc- 12988529  T
Q  133 aaacctaatctctaagagatttagctac 160  Q
    | ||||||||||||||||||||||||||    
T  12988530 agacctaatctctaagagatttagctac 12988557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 31072033 - 31071941
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||| | |||||||||||||||||||||||||||||||||     |||||||||||||||| |||  ||| ||||| |||||||||||    
T  31072033 gattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaataacataataaatggaagaattaaaacatacataaa 31071941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 6512972 - 6512892
Alignment:
Q  132 caaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 212  Q
    ||||||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| | || ||||| ||||||||    
T  6512972 caaacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaataatagaattaaaacatacat 6512892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 28108196 - 28108276
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacga-attacaaataacataattaattaaagcattaacacatacataaa 215  Q
    ||||||| | ||||||||||||||||||||||| |||  ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  28108196 acctaatatataagagatttagctactcataat-cgagtttacaaatagcataatcaatgaaagaattaaaacatacataaa 28108276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 2378946 - 2378914
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  2378946 acctaatctctaagagatttagctactcataat 2378914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 3597189 - 3597221
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  3597189 acctaatctctaagagatttagctactcataat 3597221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 11401973 - 11401941
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  11401973 acctaatctctaagagatttagctactcataat 11401941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 13004905 - 13004873
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  13004905 acctaatctctaagagatttagctactcataat 13004873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 26942842 - 26942874
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  26942842 acctaatctctaagagatttagctactcataat 26942874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 28665671 - 28665703
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  28665671 acctaatctctaagagatttagctactcataat 28665703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 30655160 - 30655128
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  30655160 acctaatctctaagagatttagctactcataat 30655128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 2846016 - 2845941
Alignment:
Q  137 ctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 212  Q
    |||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| ||||||||    
T  2846016 ctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatataagaattaaaacatacat 2845941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 5259652 - 5259621
Alignment:
Q  136 cctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||||||||||||||    
T  5259652 cctaatctctaagagatttagctactcataat 5259621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 13021561 - 13021686
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 132  Q
    |||||| || |||||||||||||||||||||||| ||||||| ||  ||||||| |||| | | | ||  |||||  | |||||||||||| |||||| |    
T  13021561 cattaagaaatattgaattgaataaaactagattgatattcacaa-taatagagcttcacaacaacatggttcaattagggttacatcagaatcatct-c 13021658  T
Q  133 aaacctaatctctaagagatttagctac 160  Q
    | |||||  |||||||||||||||||||    
T  13021659 agacctatcctctaagagatttagctac 13021686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 11247478 - 11247448
Alignment:
Q  135 acctaatctctaagagatttagctactcata 165  Q
    |||||||||||||||||||||||||||||||    
T  11247478 acctaatctctaagagatttagctactcata 11247448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 10289689 - 10289657
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||| ||||||||||    
T  10289689 acctaatctctaagagatttagttactcataat 10289657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 11126103 - 11126135
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||| ||||||    
T  11126103 acctaatctctaagagatttagctacccataat 11126135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 11188323 - 11188355
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||| ||||||||||||||||||||||||||||    
T  11188323 acctgatctctaagagatttagctactcataat 11188355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 22561571 - 22561603
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||| |||||||||||||||||||    
T  22561571 acctaatctctaaaagatttagctactcataat 22561603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 5e-79; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 34 - 437
Target Start/End: Original strand, 27298756 - 27299165
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctcc 132  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| || ||||||||| | |||| |||||||||||||     
T  27298756 cattaagaacaattgaattgaataaaactagattgatattcacaagcaatagagtttcacagccacatgtttcaaacatgattacttcagattcatctc- 27298854  T
Q  133 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggat 232  Q
    | ||||||||||||||| |||||||||||| ||||| | |||||||||| ||| || |||| |||||| || |||||| |||| |||||||||||  |||    
T  27298855 agacctaatctctaagacatttagctactcgtaatatggattacaaataccatcataaattgaagcataaaaacatacgtaaactgactatgagtttgat 27298954  T
Q  233 ggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaacaggtt-------aataggaaa 325  Q
    ||||||||||||||||||||||| |||||| |||| |  | || | |||||||||||| ||||||||| |||||||||||||||       |||||||||    
T  27298955 ggaatgaccacctcttcagtcttctgctctaaaaaccacacttcaaatctccaaaattcagaacccttgtttctgaaacaggtttagcttaaataggaaa 27299054  T
Q  326 ttcctgtgatcaaaatcgtgtcacaattctcagtaatcgtgccacaattccatctctaaacctaaattcctgctcgaaccatcttcaaaatcgtgtcacg 425  Q
    ||  |||||  ||||||||||||  || |||||||||||||||||| || || |||||||||||| |||| | |||  |  |||||||||| ||||||||    
T  27299055 tt-atgtgacaaaaatcgtgtcatgatcctcagtaatcgtgccacattttcagctctaaacctaacttccggatcgccctctcttcaaaattgtgtcacg 27299153  T
Q  426 cattacaaaatc 437  Q
    | ||| ||||||    
T  27299154 ccttataaaatc 27299165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 34 - 267
Target Start/End: Original strand, 27308315 - 27308546
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaac-aggttacatcagattcatctcc 132  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| || ||| |||| || |||| |||||||||||| |    
T  27308315 cattaagaacaattgaattgaataaaactagattgatattcacaagcaatagattttcatagccacatgttttaaacaagattacttcagattcatct-c 27308413  T
Q  133 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggat 232  Q
    | |||||||||||||||||||||||||| ||||||| | ||| |||||||||| | |  || |||||| || |||||||||||  ||||||||  |||||    
T  27308414 agacctaatctctaagagatttagctacacataatatggattgcaaataacatcaatcgttgaagcataaaaacatacataaaccgactatga--gggat 27308511  T
Q  233 ggaatgaccacctcttcagtcttgtgctctcaaaa 267  Q
    |||||| |||||||||||||||| |||||| ||||    
T  27308512 ggaatggccacctcttcagtcttctgctctgaaaa 27308546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 49 - 225
Target Start/End: Original strand, 27308887 - 27309063
Alignment:
Q  49 aattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatctctaa 147  Q
    |||||||||||| |||||| ||||||| |||||||||||||||| | ||| || ||||||||| | |||| ||||||||||||| | |||||||||||||    
T  27308887 aattgaataaaaatagattgatattcacaagcaatagagtttcacaaccaaatgtttcaaacaagattacttcagattcatctc-agacctaatctctaa 27308985  T
Q  148 gagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatga 225  Q
    ||||||||||||||||||||| |||||||||||||||| || | || |||||| || ||||||||||| | |||||||    
T  27308986 gagatttagctactcataatatgaattacaaataacatcatcagttgaagcataaaaacatacataaactaactatga 27309063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 114 - 316
Target Start/End: Original strand, 8099174 - 8099373
Alignment:
Q  114 ttacatcagattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacata 213  Q
    |||||||| ||||||||||| | | |||| ||||  |||||| ||||| ||||    |||||||||||||||||| | |  |||| |||| ||||||| |    
T  8099174 ttacatcatattcatctccagatccaatcactaat-gatttaactactgataactgaaattacaaataacataatcattctaagctttaaaacatacaaa 8099272  T
Q  214 aattgactatgagtgggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaacag 313  Q
    |  ||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||  || ||||  || ||||| ||||||||| ||| ||||||||    
T  8099273 a--tgactatgagttggatggactgaccacctcttcaatcttatgctctcaaaatcgtgcttcagataccctaaattcagaacccttgtttttgaaacag 8099370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 34 - 215
Target Start/End: Complemental strand, 18542452 - 18542270
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataa--gcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctc 131  Q
    |||||| ||| ||||||||||||||||||| ||| |||||||||   | |||||||||||| |   | |   |||||||||  ||||||| |||||||||    
T  18542452 cattaagaacaattgaattgaataaaactatattgatattcatatatgaaatagagtttcacattaacaaggttcaaacagagtacatcatattcatctc 18542353  T
Q  132 caaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
     ||||||||||||||| |||||||||||||||||||   | ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  18542352 -aaacctaatctctaaaagatttagctactcataattgaatttacaaatagcataatcaatggaagaattaaaacatacataaa 18542270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 11636733 - 11636608
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 132  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| ||  |||||||||||| ||| | ||  |||||  | |||||||||||| |||||| |    
T  11636733 cattaagaacaattgaattgaataaaactagattgatattcacaa-taatagagtttcacagcaacatggttcaattagggttacatcagaatcatct-c 11636636  T
Q  133 aaacctaatctctaagagatttagctac 160  Q
    | ||||||||||||||||||||||||||    
T  11636635 agacctaatctctaagagatttagctac 11636608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 22360349 - 22360214
Alignment:
Q  31 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatc 129  Q
    ||||||||| ||| ||||||||||||| || |||||| ||||||| ||| ||| |||||||| | | | || ||| ||  ||| ||||| || | |||||    
T  22360349 aaacattaagaacaattgaattgaatataaatagattgatattcacaagaaattgagtttcacatcaacatgtttaaattagggttaca-cataatcatc 22360251  T
Q  130 tccaaacctaatctctaagagatttagctactcataat 167  Q
    || | |||||||||||||||||||||||||||||||||    
T  22360250 tc-agacctaatctctaagagatttagctactcataat 22360214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 35751254 - 35751174
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  35751254 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 35751174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 29344266 - 29344301
Alignment:
Q  132 caaacctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||||||||||||||||||    
T  29344266 caaacctaatctctaagagatttagctactcataat 29344301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 45896281 - 45896148
Alignment:
Q  34 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 131  Q
    |||||| ||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| ||||  |||||  ||| |||||  ||| |||||||    
T  45896281 cattaagaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaatatggttcaattagggttacaa-agaatcatctc 45896183  T
Q  132 caaacctaatctctaagagatttagctactcataat 167  Q
     | |||||||||||||||||||||||||||||||||    
T  45896182 -agacctaatctctaagagatttagctactcataat 45896148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 22993989 - 22994168
Alignment:
Q  31 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatc 129  Q
    ||||||||| ||  ||||||||||||||||||||||| ||||||| ||  |||||||||| | ||| | || ||| ||  | |||| || || | |||||    
T  22993989 aaacattaagaaaaattgaattgaataaaactagattgatattcacaataaatagagttttacagcaacatgtttaaattacggtttca-cataatcatc 22994087  T
Q  130 tccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 212  Q
    | || ||||||||||| |||||||||||||||||||||  || ||||||||| |||| | |||  ||| ||||| ||||||||    
T  22994088 t-cagacctaatctctgagagatttagctactcataat-tgagttacaaatagcatattcaatggaagaattaaaacatacat 22994168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 7486370 - 7486317
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 188  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  7486370 acctaatctctaagagatttagctactcataattgagtttacaaataacataat 7486317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 27091694 - 27091661
Alignment:
Q  135 acctaatctctaagagatttagctactcataata 168  Q
    ||||||||||||||||||||||||||||||||||    
T  27091694 acctaatctctaagagatttagctactcataata 27091661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 30690535 - 30690482
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 188  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| ||||||    
T  30690535 acctaatctctaagagatttagctactcataattgaatttacaaatagcataat 30690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 47051295 - 47051215
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaatt-acaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||  || || ||||||| |||||| |||  ||| ||||| |||||||||||    
T  47051295 acctaatctctaagagatttagctactcataat-tgagttcacaaatagcataatcaatggaagaattaaaacatacataaa 47051215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 2873364 - 2873332
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  2873364 acctaatctctaagagatttagctactcataat 2873332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 3840316 - 3840284
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  3840316 acctaatctctaagagatttagctactcataat 3840284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 11190326 - 11190294
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  11190326 acctaatctctaagagatttagctactcataat 11190294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 20729041 - 20729073
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  20729041 acctaatctctaagagatttagctactcataat 20729073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 24125299 - 24125267
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  24125299 acctaatctctaagagatttagctactcataat 24125267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 24128576 - 24128544
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  24128576 acctaatctctaagagatttagctactcataat 24128544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 25584487 - 25584455
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  25584487 acctaatctctaagagatttagctactcataat 25584455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 32287718 - 32287750
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  32287718 acctaatctctaagagatttagctactcataat 32287750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 41976815 - 41976783
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  41976815 acctaatctctaagagatttagctactcataat 41976783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 43926635 - 43926603
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  43926635 acctaatctctaagagatttagctactcataat 43926603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 47054725 - 47054693
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  47054725 acctaatctctaagagatttagctactcataat 47054693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 50461943 - 50461975
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  50461943 acctaatctctaagagatttagctactcataat 50461975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 54723541 - 54723509
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  54723541 acctaatctctaagagatttagctactcataat 54723509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 30220403 - 30220456
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacga-attacaaataacataat 188  Q
    ||||||| ||||||||||||||||||||||||| |||  ||||||||||||||||    
T  30220403 acctaatatctaagagatttagctactcataat-cgagtttacaaataacataat 30220456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 288
Target Start/End: Complemental strand, 6030506 - 6030457
Alignment:
Q  239 accacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaa 288  Q
    |||||||||| |||||| |||||||||  |||| ||||||||||||||||    
T  6030506 accacctctttagtcttttgctctcaagttcgtgttttagatctccaaaa 6030457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 22370252 - 22370117
Alignment:
Q  31 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatc 129  Q
    ||||||||| ||| ||||||||||||| || |||||| |||||||  || ||| |||||||| | | | || ||| ||  ||| ||||| || | |||||    
T  22370252 aaacattaagaacaattgaattgaatataaatagattgatattcacgagaaattgagtttcacaacaacatgtttaaattagggttaca-cataatcatc 22370154  T
Q  130 tccaaacctaatctctaagagatttagctactcataat 167  Q
    || | |||||||||||||||||||| ||||||||||||    
T  22370153 tc-agacctaatctctaagagattttgctactcataat 22370117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 282495 - 282555
Alignment:
Q  45 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatattt 105  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||||||||  |||| ||||||    
T  282495 attgaattgaataaaactagatttataattataatcaattgagtttcacggccacatattt 282555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 7167804 - 7167836
Alignment:
Q  439 tgaaattgtgtcacgatgccaaaatcatgtcac 471  Q
    |||||||||||||||||||||||||| ||||||    
T  7167804 tgaaattgtgtcacgatgccaaaatcgtgtcac 7167836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 17040416 - 17040448
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||| |||||||||||    
T  17040416 acctaatctctaagagatttaactactcataat 17040448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 19301899 - 19301931
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||| |||||||||||||||    
T  19301899 acctaatctctaagagagttagctactcataat 19301931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 19305083 - 19305115
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||| |||||||||||||||    
T  19305083 acctaatctctaagagagttagctactcataat 19305115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 22783392 - 22783360
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||||||||| |||||    
T  22783392 acctaatctctaagagatttagctacttataat 22783360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 22787756 - 22787724
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||||||||| |||||    
T  22787756 acctaatctctaagagatttagctacttataat 22787724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 28008464 - 28008496
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||| ||||||||||||||||||||||||||    
T  28008464 acctaaactctaagagatttagctactcataat 28008496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 52309952 - 52309984
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||| |||||||||||||||||||||||||    
T  52309952 acctaatatctaagagatttagctactcataat 52309984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 45 - 310
Target Start/End: Complemental strand, 31514 - 31249
Alignment:
Q  45 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatct 143  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| || ||||||||| | |||||||||||||||||| | |||||||||    
T  31514 attgaattgaataaaactagattgatattcataagcaatatagtttcacaaccacatgtttcaaacatgattacatcagattcatctc-agacctaatct 31416  T
Q  144 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggatggaatgaccac 243  Q
    |||||||||||| ||||||||  || | |||| ||||||||  || |||| |||||| || ||||||||||| ||||||||||| ||| |||||| ||||    
T  31415 ctaagagatttaactactcattgtatggattaaaaataacaacatcaattgaagcataaaaacatacataaactgactatgagttggaaggaatggccac 31316  T
Q  244 ctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaa 310  Q
    |||||||||||| ||||||||||||     || |||||||| ||||| |||||||||||||||||||    
T  31315 ctcttcagtcttttgctctcaaaattacgcttcagatctcctaaattcagaacccttatttctgaaa 31249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 45 - 310
Target Start/End: Original strand, 37907563 - 37907828
Alignment:
Q  45 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatct 143  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| || ||||||||| | |||||||||||||||||| | |||||||||    
T  37907563 attgaattgaataaaactagattgatattcataagcaatatagtttcacaaccacatgtttcaaacatgattacatcagattcatctc-agacctaatct 37907661  T
Q  144 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggatggaatgaccac 243  Q
    |||||||||||| ||||||||  || | |||| ||||||||  || |||| |||||| || ||||||||||| ||||||||||| ||| |||||| ||||    
T  37907662 ctaagagatttaactactcattgtatggattaaaaataacaacatcaattgaagcataaaaacatacataaactgactatgagttggaaggaatggccac 37907761  T
Q  244 ctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaa 310  Q
    |||||||||||| ||||||||||||     || |||||||| ||||| |||||||||||||||||||    
T  37907762 ctcttcagtcttttgctctcaaaattacgcttcagatctcctaaattcagaacccttatttctgaaa 37907828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 7635451 - 7635281
Alignment:
Q  45 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatct 143  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| | | | || ||| ||  ||| |||||||||| ||||||| | |||||||||    
T  7635451 attgaattgaataaaactagattgatattcataagaaatagagtttcacatcaacatgtttaaattagggttacatcagaatcatctc-acacctaatct 7635353  T
Q  144 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||| |||||||||||     ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  7635352 ctaagagatttaactactcataattgagtttacaaatagcataatcaatgaaagaattaaaacatacataaa 7635281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 27332077 - 27332258
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 132  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| | || ||| ||  | |||||||||||| |||| | |    
T  27332077 cattaataacaattgaattgaataaaactagattgatattcacaagaaataaagtttcatagcaacatgtttaaattagggttacatcagaatcat-ttc 27332175  T
Q  133 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    | ||||||||| |||||||||||||||||||||||     ||||| ||| |||||| ||| |||| ||||| |||||||||||    
T  27332176 agacctaatctttaagagatttagctactcataattgagtttacagatagcataatcaatgaaagaattaaaacatacataaa 27332258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 34066758 - 34066880
Alignment:
Q  45 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 143  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||| | | | || ||| ||  | |||||||||| | |||||| || |||||||||    
T  34066758 attgaattgaataaaactagattgatattcacaagaaatagagtttcacaacaacatgtttaaattagggttacatcaaaatcatct-catacctaatct 34066856  T
Q  144 ctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||||||    
T  34066857 ctaagagatttagctactcataat 34066880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 34732667 - 34732819
Alignment:
Q  35 attaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctcca 133  Q
    ||||| ||| |||||||||||||||| ||||||||  ||||| ||   ||||||||||| ||| | |||||||||   ||||||| |||| ||||||| |    
T  34732667 attaagaacaattgaattgaataaaaactagattatcattcacaatagatagagtttcacagcaacatatttcaatagggttaca-cagaatcatctc-a 34732764  T
Q  134 aacctaatctctaagagatttagctactcataatacga-attacaaataacataat 188  Q
      |||||||||||| ||||||||||||||||||| |||  ||||||||||||||||    
T  34732765 ggcctaatctctaatagatttagctactcataat-cgagtttacaaataacataat 34732819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 6071348 - 6071441
Alignment:
Q  121 agattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  6071348 agattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 6071441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 27536693 - 27536773
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| |||  ||||| |||||||||||    
T  27536693 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatgaaaaaattaaaacatacataaa 27536773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 20398569 - 20398537
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  20398569 acctaatctctaagagatttagctactcataat 20398537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 21018873 - 21018905
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  21018873 acctaatctctaagagatttagctactcataat 21018905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 23022331 - 23022363
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  23022331 acctaatctctaagagatttagctactcataat 23022363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 28110773 - 28110741
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  28110773 acctaatctctaagagatttagctactcataat 28110741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 31204554 - 31204522
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  31204554 acctaatctctaagagatttagctactcataat 31204522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 37184271 - 37184303
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  37184271 acctaatctctaagagatttagctactcataat 37184303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 41058709 - 41058741
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  41058709 acctaatctctaagagatttagctactcataat 41058741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 45961152 - 45961184
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  45961152 acctaatctctaagagatttagctactcataat 45961184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 45941132 - 45941102
Alignment:
Q  135 acctaatctctaagagatttagctactcata 165  Q
    |||||||||||||||||||||||||||||||    
T  45941132 acctaatctctaagagatttagctactcata 45941102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 11668433 - 11668465
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||| ||||||    
T  11668433 acctaatctctaagagatttagctacacataat 11668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 34 - 311
Target Start/End: Original strand, 48709 - 48986
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacag-gttacatcagattcatctcc 132  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| | | ||||||||| || |   | || | |||| ||| || ||||||||||||||||     
T  48709 cattaagaacaattgaattgaataaaactagattgatattcacatgaaatagagttgcacattaacatgtctcaaccagagtaacatcagattcatctc- 48807  T
Q  133 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggat 232  Q
    ||||||||||||||||||||||||| |||||||||   ||||||||||| |||||| |||  ||| ||||| ||||||||||| |||||| |||| ||||    
T  48808 aaacctaatctctaagagatttagccactcataattgtaattacaaatagcataatcaatggaagaattaaaacatacataaactgactacgagttggat 48907  T
Q  233 ggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaac 311  Q
    || ||| |||||||||||||||| |||||||||||| |   ||| | |||||||||||  |||||||| ||||||||||    
T  48908 gggatggccacctcttcagtcttttgctctcaaaattgcgctttcggtctccaaaatttcgaacccttgtttctgaaac 48986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 33 - 306
Target Start/End: Original strand, 35521671 - 35521941
Alignment:
Q  33 acattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacag-gttacatcagattcatctc 131  Q
    ||||||| ||| |||||||||| |||||||||||| |||  || | | |||||||||||| | | | ||  ||||||||  |||||||||||||||||||    
T  35521671 acattaagaacaattgaattgagtaaaactagattgatacccacatgaaatagagtttcacaacaacatggttcaaacaaagttacatcagattcatctc 35521770  T
Q  132 caaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtggga 231  Q
      |||||||||| ||| |||||||||||||||||||   ||||||||||| |||||| |||| |||||| || ||||||| ||    ||||| ||| |||    
T  35521771 ataacctaatctttaatagatttagctactcataattgaaattacaaatagcataatcaatttaagcataaaaacatacacaa----actattagttgga 35521866  T
Q  232 tggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttct 306  Q
    |||| |||||||| ||| |||  | |||||||||||||||  || ||||||||||||||  ||||||||| ||||    
T  35521867 tggattgaccaccactttagttctttgctctcaaaatcgtgcttcagatctccaaaattccgaacccttacttct 35521941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 11187694 - 11187611
Alignment:
Q  215 attgactatgagtgggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaaccc 298  Q
    |||||||||||||  | ||||||| |||||||||||||||||||||||||||| | |  || | |||||||||||| |||||||    
T  11187694 attgactatgagtttggtggaatggccacctcttcagtcttgtgctctcaaaagcatgcttcaaatctccaaaattcagaaccc 11187611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 22630627 - 22630486
Alignment:
Q  46 ttgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctccaaacctaatctc 144  Q
    ||||||||||||||| ||||||||  ||||| ||  |||||||||||| ||| | || ||||||  ||||||||| ||| ||||||| | |||||| |||    
T  22630627 ttgaattgaataaaaactagattatcattcacaataaatagagtttcacagcaacatgtttcaattaggttacat-agaatcatctc-agacctaacctc 22630530  T
Q  145 taagagatttagctactcataatacgaattacaaataacataat 188  Q
    ||| |||||||||||||||||||     ||||||||||||||||    
T  22630529 taatagatttagctactcataatggtgtttacaaataacataat 22630486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 31427938 - 31428030
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||| | |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  31427938 gattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 31428030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 9966712 - 9966792
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||| |||||||||| ||| |||| ||||| | |||||||||    
T  9966712 acctaatctctaagagatttagctactcataattgagtttacatataacataatcaatgaaagaattaaaatatacataaa 9966792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 33310363 - 33310283
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||||| |||  ||  ||||| |||||||||||    
T  33310363 acctaatctctaagagatttagctactcataattgagtttacaaataacataatcaatggaaaaattaaaacatacataaa 33310283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 45453571 - 45453491
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  45453571 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 45453491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 45456858 - 45456778
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  45456858 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 45456778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 43723398 - 43723345
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 188  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| ||||||    
T  43723398 acctaatctctaagagatttagctactcataattgaatttacaaatagcataat 43723345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 8888332 - 8888300
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  8888332 acctaatctctaagagatttagctactcataat 8888300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 9185832 - 9185864
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  9185832 acctaatctctaagagatttagctactcataat 9185864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 9189061 - 9189093
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  9189061 acctaatctctaagagatttagctactcataat 9189093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 11348304 - 11348336
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  11348304 acctaatctctaagagatttagctactcataat 11348336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 13972302 - 13972334
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  13972302 acctaatctctaagagatttagctactcataat 13972334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 22020765 - 22020733
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  22020765 acctaatctctaagagatttagctactcataat 22020733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 25960097 - 25960129
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  25960097 acctaatctctaagagatttagctactcataat 25960129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 27266485 - 27266453
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  27266485 acctaatctctaagagatttagctactcataat 27266453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 30190033 - 30190001
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  30190033 acctaatctctaagagatttagctactcataat 30190001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 38015215 - 38015183
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  38015215 acctaatctctaagagatttagctactcataat 38015183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 40781169 - 40781137
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  40781169 acctaatctctaagagatttagctactcataat 40781137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 42369119 - 42369151
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  42369119 acctaatctctaagagatttagctactcataat 42369151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 6298183 - 6298117
Alignment:
Q  114 ttacatcagattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaata 181  Q
    |||||||| ||||||||| | || ||||| ||| || |||||||||||||||||| ||||||||||||    
T  6298183 ttacatcacattcatctctagacataatccctagga-atttagctactcataataggaattacaaata 6298117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 165
Target Start/End: Complemental strand, 5105423 - 5105393
Alignment:
Q  135 acctaatctctaagagatttagctactcata 165  Q
    |||||||||||||||||||||||||||||||    
T  5105423 acctaatctctaagagatttagctactcata 5105393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 168
Target Start/End: Complemental strand, 24234789 - 24234759
Alignment:
Q  138 taatctctaagagatttagctactcataata 168  Q
    |||||||||||||||||||||||||||||||    
T  24234789 taatctctaagagatttagctactcataata 24234759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 31430104 - 31430178
Alignment:
Q  141 tctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  31430104 tctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 31430178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 43208298 - 43208328
Alignment:
Q  135 acctaatctctaagagatttagctactcata 165  Q
    |||||||||||||||||||||||||||||||    
T  43208298 acctaatctctaagagatttagctactcata 43208328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 24238064 - 24238031
Alignment:
Q  135 acctaatctctaagagatttagctactcataata 168  Q
    ||||||||||||| ||||||||||||||||||||    
T  24238064 acctaatctctaaaagatttagctactcataata 24238031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 37280089 - 37280117
Alignment:
Q  139 aatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||    
T  37280089 aatctctaagagatttagctactcataat 37280117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 35 - 198
Target Start/End: Original strand, 563530 - 563692
Alignment:
Q  35 attaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctccaa 134  Q
    ||||| ||| ||| ||||||||||||||| ||||||||||| | |||||||||||||| | ||| || ||||||||||  ||||||||| || |||||||    
T  563530 attaagaacaattaaattgaataaaactatattaatattcacatgcaatagagtttcacaaccacatgtttcaaacagtctacatcagaatcgtctccaa 563629  T
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagc 198  Q
    ||||||||||| || ||||||| ||||||||||   |||||||||||||||||| |||| ||||    
T  563630 acctaatctct-agtgatttagatactcataatgaaaattacaaataacataatcaattgaagc 563692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 222
Target Start/End: Complemental strand, 31575222 - 31575045
Alignment:
Q  45 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 143  Q
    |||||||| |||||||||||||| ||||||| | | |||||||||||| | | | ||  |||||| | ||||||||||||||||||| || ||||| |||    
T  31575222 attgaattaaataaaactagattgatattcacatgaaatagagtttcacaacaacatggttcaaatagggttacatcagattcatct-cagacctactct 31575124  T
Q  144 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgacta 222  Q
     ||||||||||| | |||||||||   |||||||||||||||||| |||  ||  ||||| ||||||||| ||||||||    
T  31575123 ttaagagatttaacaactcataattgaaattacaaataacataatcaatggaataattaaaacatacatatattgacta 31575045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 18765947 - 18766044
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatct 130  Q
    |||||||||| |||||||||||||||||||||||||||| || |||||||| ||||||| ||||| || ||||||| ||| |||| ||||||||||||    
T  18765947 cattaaaaacaattgaattgaataaaactagattaatatgcacaagcaataaagtttcacagccacatgtttcaaataggattacctcagattcatct 18766044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 21914937 - 21914818
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 132  Q
    |||||| ||| ||||||||||||||||||||||| || |||| ||  |||||||||||||||| | ||  |||||  | |||||||||||| |||||| |    
T  21914937 cattaagaacaattgaattgaataaaactagattgattttcacaa-taatagagtttcatagcaacatggttcaattagggttacatcagaatcatct-c 21914840  T
Q  133 aaacctaatctctaagagattt 154  Q
    | ||||||||||||||||||||    
T  21914839 agacctaatctctaagagattt 21914818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 17664267 - 17664187
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  17664267 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatgaaagaattaaaacatacataaa 17664187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 18766058 - 18766147
Alignment:
Q  221 tatgagtgggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaa 310  Q
    ||||||| |||||| ||| |||||||||||||||| |||||||||||| |   || | |||||||||||| | ||||||| |||||||||    
T  18766058 tatgagttggatgggatggccacctcttcagtcttctgctctcaaaattgcgcttcatatctccaaaattcaaaacccttgtttctgaaa 18766147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 7624817 - 7624737
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  7624817 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 7624737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 20055489 - 20055409
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     |||||||||  ||||| ||| |||| ||||| |||||||||||    
T  20055489 acctaatctctaagagatttagctactcataattgagtttacaaatagaataatcaatgaaagaattaaaacatacataaa 20055409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 41877071 - 41877204
Alignment:
Q  34 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 131  Q
    |||||||||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| | ||  |||||  ||| |||||  ||| |||||||    
T  41877071 cattaaaaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaacatggttcaattagggttacaa-agaatcatctc 41877169  T
Q  132 caaacctaatctctaagagatttagctactcataat 167  Q
     | |||||||||||||||||||||||||||||||||    
T  41877170 -agacctaatctctaagagatttagctactcataat 41877204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 26896011 - 26896064
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacga-attacaaataacataat 188  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  26896011 acctaatctctaagagatttagctactcataat-cgagtttacaaataacataat 26896064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 26753109 - 26753162
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 188  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| ||||||    
T  26753109 acctaatctctaagagatttagctactcataattgaatttacaaatatcataat 26753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 7270731 - 7270699
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  7270731 acctaatctctaagagatttagctactcataat 7270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 14016546 - 14016578
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  14016546 acctaatctctaagagatttagctactcataat 14016578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 18952408 - 18952376
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  18952408 acctaatctctaagagatttagctactcataat 18952376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 22129980 - 22129948
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  22129980 acctaatctctaagagatttagctactcataat 22129948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 30066057 - 30066025
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  30066057 acctaatctctaagagatttagctactcataat 30066025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 33551836 - 33551804
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  33551836 acctaatctctaagagatttagctactcataat 33551804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 34831478 - 34831446
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  34831478 acctaatctctaagagatttagctactcataat 34831446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 41306934 - 41306966
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  41306934 acctaatctctaagagatttagctactcataat 41306966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 167
Target Start/End: Original strand, 18239900 - 18239935
Alignment:
Q  132 caaacctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||| |||||||||||    
T  18239900 caaacctaatctctaagagatttaactactcataat 18239935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 4099929 - 4099961
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||| |||||||||||    
T  4099929 acctaatctctaagagatttatctactcataat 4099961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 18032173 - 18032141
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||||||| |||||||    
T  18032173 acctaatctctaagagatttagctattcataat 18032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 34 - 302
Target Start/End: Complemental strand, 24917998 - 24917731
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggt-tacatcagattcatctcc 132  Q
    |||||| ||| |||| |||||||||||||| ||||||||||| | |||||||||||||| ||| | |||||||||||| || |||||  || ||||||||    
T  24917998 cattaagaacaattggattgaataaaactaaattaatattcacatgcaatagagtttcacagcgacatatttcaaacaagtctacatacgaatcatctcc 24917899  T
Q  133 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggat 232  Q
    | ||||||||| |  | |||||||| |||| ||||   |||||  ||||||||||| |  | ||||||||| ||||||| | || |||||| ||| ||||    
T  24917898 agacctaatctat-ggtgatttagccactcgtaatgaaaattagtaataacataatcatctgaagcattaaaacatacaaagatggactataagttggat 24917800  T
Q  233 ggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttat 302  Q
    |||| ||||||||||| ||||||   |||||||||||||  || | |||||||||||| | |||||||||    
T  24917799 ggaa-gaccacctctttagtcttccactctcaaaatcgtgcttcaaatctccaaaattcaaaacccttat 24917731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 300
Target Start/End: Complemental strand, 2090408 - 2090144
Alignment:
Q  35 attaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggt-tacatcagattcatctcca 133  Q
    ||||| ||| |||||||||||||| |||||||||||| || ||  || |||||||||| | ||| |||||||||||| |  |||||||   |||||||||    
T  2090408 attaagaacaattgaattgaataagactagattaataatcttataca-tagagtttcacaaccacatatttcaaacaagcctacatcaagatcatctcca 2090310  T
Q  134 aacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggatg 233  Q
     || ||||||||||  ||||||||||  ||||||   |||||||||||||| ||| || | ||||||||| | |||||   || ||||||||||  | ||    
T  2090309 gacgtaatctctaat-gatttagctatacataatgaaaattacaaataacacaatcaaatgaagcattaaaatatacaaggatcgactatgagtttggtg 2090211  T
Q  234 gaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaaccctt 300  Q
    ||||| |||||||||||||||| | |||||||||||||  || ||||| |||||||| |||||||||    
T  2090210 gaatggccacctcttcagtcttatactctcaaaatcgtgcttcagatcgccaaaatttagaaccctt 2090144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 14683856 - 14683936
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  14683856 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaataaaagaattaaaacatacataaa 14683936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 6603172 - 6603080
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||| | |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  6603172 gattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 6603080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 167
Target Start/End: Complemental strand, 7227330 - 7227197
Alignment:
Q  34 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 131  Q
    |||||| ||| |||||||||||||||| ||| |||   ||||| ||  |||||||||||||||| | || ||||||  ||| ||||| |||| ||||||     
T  7227330 cattaagaacaattgaattgaataaaaactaaattgtcattcacaataaatagagtttcatagcaacatgtttcaattagggttaca-cagaatcatctt 7227232  T
Q  132 caaacctaatctctaagagatttagctactcataat 167  Q
     | |||||||||||||||||||||||||||||||||    
T  7227231 -agacctaatctctaagagatttagctactcataat 7227197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 18562923 - 18562977
Alignment:
Q  112 ggttacatcagattcatctccaaacctaatctctaagagatttagctactcataat 167  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||    
T  18562923 ggttacatcagaatcatctc-agacctaatctctaagagatttagctacttataat 18562977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 213
Target Start/End: Original strand, 11398438 - 11398516
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacata 213  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||    
T  11398438 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacata 11398516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 9405959 - 9405927
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  9405959 acctaatctctaagagatttagctactcataat 9405927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 9865139 - 9865171
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  9865139 acctaatctctaagagatttagctactcataat 9865171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 17730516 - 17730484
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  17730516 acctaatctctaagagatttagctactcataat 17730484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 13842355 - 13842262
Alignment:
Q  121 agattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    ||||||||||| | ||||||||||||| |||||||||||| ||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  13842355 agattcatctc-agacctaatctctaatagatttagctacgcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 13842262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 16165462 - 16165418
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataat 167  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||    
T  16165462 gattcatctc-agacctaatctctaagagatttaactactcataat 16165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 48645188 - 48645144
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataat 167  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||    
T  48645188 gattcatctc-agacctaatctctaagagatttagctacgcataat 48645144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 4596421 - 4596453
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||| ||||||    
T  4596421 acctaatctctaagagatttagctacacataat 4596453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 4695226 - 4695194
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||| |||||||||||||||||||    
T  4695226 acctaatctctaaaagatttagctactcataat 4695194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 23225318 - 23225350
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||| |||||||||||    
T  23225318 acctaatctctaagagatttaactactcataat 23225350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 23234471 - 23234503
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||| |||||||||||    
T  23234471 acctaatctctaagagatttaactactcataat 23234503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 9753 - 9575
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 132  Q
    |||||| ||| ||||||||||||||||||| ||| ||||||||||| |||||||||||| ||| | || ||| ||  | || ||||||||| |||||| |    
T  9753 cattaagaacaattgaattgaataaaactatattgatattcataagaaatagagtttcacagcaacatgtttaaattagggatacatcagaatcatct-c 9655  T
Q  133 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 212  Q
    | ||||||| |||||||||||||||||||||||||     ||||||||| |||||| |||||||| ||||| | ||||||    
T  9654 agacctaatatctaagagatttagctactcataattgagtttacaaatagcataatcaattaaagaattaaaatatacat 9575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 89484 - 89404
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||| ||| ||||| |||||||||||    
T  89484 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaattgaagaattaaaacatacataaa 89404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 7944352 - 7944439
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgacta 222  Q
    ||||||| ||||| ||||||| |||||||||||  | |||||||||||||| || |||| ||||||||| ||| ||||||| ||||||    
T  7944352 acctaatttctaatagatttaactactcataattggtattacaaataacatgatcaattgaagcattaaaacagacataaactgacta 7944439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 36711063 - 36711143
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  36711063 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 36711143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 22174319 - 22174363
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataat 167  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  22174319 gattcatctc-agacctaatctctaagagatttagctactcataat 22174363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 12582720 - 12582688
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  12582720 acctaatctctaagagatttagctactcataat 12582688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 16953488 - 16953456
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  16953488 acctaatctctaagagatttagctactcataat 16953456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 18824802 - 18824834
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  18824802 acctaatctctaagagatttagctactcataat 18824834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 18826295 - 18826327
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  18826295 acctaatctctaagagatttagctactcataat 18826327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 2560301 - 2560248
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 188  Q
    |||||| ||||||||||||||||||||||||||     ||||||||||||||||    
T  2560301 acctaacctctaagagatttagctactcataatggtgtttacaaataacataat 2560248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 5614135 - 5614167
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||||||||| |||||    
T  5614135 acctaatctctaagagatttagctacttataat 5614167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 5980720 - 5980752
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||| ||||||||||||||||||||||||    
T  5980720 acctaatccctaagagatttagctactcataat 5980752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 30784642 - 30784610
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||| ||||||||||||||||||||||||||    
T  30784642 acctaacctctaagagatttagctactcataat 30784610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 38248811 - 38248839
Alignment:
Q  139 aatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||    
T  38248811 aatctctaagagatttagctactcataat 38248839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 118854 - 118931
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacga-attacaaataacataattaattaaagcattaacacatacat 212  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||| |||||| ||| |||  ||||||||||||||    
T  118854 acctaatctctaagagatttagctactcataat-cgagtttacaaatagcataatcaatgaaataattaacacatacat 118931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 34018085 - 34018220
Alignment:
Q  31 aaacattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatc 129  Q
    ||||||||| ||| |||||||||||||||| ||||| |   ||||| ||  |||||||||||| ||| | ||  |||||  ||||||||  ||| |||||    
T  34018085 aaacattaagaacaattgaattgaataaaaactagactgtcattcacaataaatagagtttcacagcaacatggttcaattaggttacaa-agaatcatc 34018183  T
Q  130 tccaaacctaatctctaagagatttagctactcataat 167  Q
    || | |||||||||||||||||||||||||||||||||    
T  34018184 tc-agacctaatctctaagagatttagctactcataat 34018220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 15405492 - 15405572
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  15405492 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 15405572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 56195241 - 56195161
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  56195241 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 56195161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 27691447 - 27691583
Alignment:
Q  31 aaacattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcat 128  Q
    ||||||||| ||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| | ||  |||||  ||| |||||  ||| ||||    
T  27691447 aaacattaagaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaacatgattcaattagggttacaa-agaatcat 27691545  T
Q  129 ctccaaacctaatctctaagagatttagctactcataat 167  Q
    ||| | |||||||||||||||||||||||||||||||||    
T  27691546 ctc-agacctaatctctaagagatttagctactcataat 27691583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 37740069 - 37740126
Alignment:
Q  34 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttca 92  Q
    |||||| ||| ||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  37740069 cattaacaacaattgaattgaataaaactagattaatattcacaa-taatagagtttca 37740126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 15436877 - 15436930
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 188  Q
    ||||||||||||||||||||||||||||||||| |   ||||||||| ||||||    
T  15436877 acctaatctctaagagatttagctactcataattcagtttacaaatagcataat 15436930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 33493998 - 33494059
Alignment:
Q  31 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttca 92  Q
    ||||||||| ||| |||||||| |||||||||| ||| ||||||||| | ||||||||||||    
T  33493998 aaacattaacaacaattgaattaaataaaactaaattgatattcatatgaaatagagtttca 33494059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 33926693 - 33926601
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||| | |||||||||||||||||||||| ||||||||||     |||||||||  ||||| ||| |||| ||||| |||||||||||    
T  33926693 gattcatctc-agacctaatctctaagagatttagttactcataattgagtttacaaatagtataatcaatgaaagaattaaaacatacataaa 33926601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 34320313 - 34320357
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataat 167  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  34320313 gattcatctc-agacctaatctctaagagatttagctactcataat 34320357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 44809351 - 44809395
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataat 167  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  44809351 gattcatctc-agacctaatctctaagagatttagctactcataat 44809395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 46955874 - 46955966
Alignment:
Q  122 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||| | ||||||||| |||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  46955874 gattcatctc-agacctaatctttaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 46955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 15163906 - 15163874
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  15163906 acctaatctctaagagatttagctactcataat 15163874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 15430264 - 15430316
Alignment:
Q  136 cctaatctctaagagatttagctactcataatacgaattacaaataacataat 188  Q
    |||||||||||||||||||||||||||||||| |   ||||||||| ||||||    
T  15430264 cctaatctctaagagatttagctactcataattcagtttacaaatagcataat 15430316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 19820442 - 19820410
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  19820442 acctaatctctaagagatttagctactcataat 19820410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 19827204 - 19827172
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  19827204 acctaatctctaagagatttagctactcataat 19827172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 24150386 - 24150354
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  24150386 acctaatctctaagagatttagctactcataat 24150354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 27677462 - 27677494
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  27677462 acctaatctctaagagatttagctactcataat 27677494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 29324539 - 29324507
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  29324539 acctaatctctaagagatttagctactcataat 29324507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 38283896 - 38283928
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  38283896 acctaatctctaagagatttagctactcataat 38283928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 39501362 - 39501330
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  39501362 acctaatctctaagagatttagctactcataat 39501330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 40903491 - 40903523
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  40903491 acctaatctctaagagatttagctactcataat 40903523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 44164497 - 44164465
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  44164497 acctaatctctaagagatttagctactcataat 44164465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 48637219 - 48637187
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  48637219 acctaatctctaagagatttagctactcataat 48637187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 52006938 - 52006970
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  52006938 acctaatctctaagagatttagctactcataat 52006970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 52531343 - 52531375
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  52531343 acctaatctctaagagatttagctactcataat 52531375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 53094221 - 53094189
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  53094221 acctaatctctaagagatttagctactcataat 53094189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 166
Target Start/End: Original strand, 8877909 - 8877940
Alignment:
Q  135 acctaatctctaagagatttagctactcataa 166  Q
    ||||||||||||||||||||||||||||||||    
T  8877909 acctaatctctaagagatttagctactcataa 8877940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 48415937 - 48415967
Alignment:
Q  135 acctaatctctaagagatttagctactcata 165  Q
    |||||||||||||||||||||||||||||||    
T  48415937 acctaatctctaagagatttagctactcata 48415967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 56198565 - 56198535
Alignment:
Q  137 ctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||    
T  56198565 ctaatctctaagagatttagctactcataat 56198535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 8448950 - 8449027
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 212  Q
    |||||||||||||||||||||| ||||||||||     ||||||||| |||||| ||| |||  ||||| ||||||||    
T  8448950 acctaatctctaagagatttagttactcataattgagtttacaaatagcataataaatgaaataattaaaacatacat 8449027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 48014459 - 48014508
Alignment:
Q  139 aatctctaagagatttagctactcataatacgaattacaaataacataat 188  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||    
T  48014459 aatctctaagagatttagctactcataattgagtttacaaataacataat 48014508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 12782619 - 12782587
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||| ||||||||||||||||||||||||||    
T  12782619 acctaacctctaagagatttagctactcataat 12782587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1684 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 48 - 128
Alignment:
Q  135 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 215  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  48 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 19113 - 19078
Alignment:
Q  132 caaacctaatctctaagagatttagctactcataat 167  Q
    ||||||||||||||||||||||||||||||||||||    
T  19113 caaacctaatctctaagagatttagctactcataat 19078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 5067 - 5035
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  5067 acctaatctctaagagatttagctactcataat 5035  T

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Target: scaffold0427 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 4196 - 4228
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  4196 acctaatctctaagagatttagctactcataat 4228  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 84955 - 84923
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    |||||||||||||||||||||||||||||||||    
T  84955 acctaatctctaagagatttagctactcataat 84923  T

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Target: scaffold0520 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 4387 - 4415
Alignment:
Q  135 acctaatctctaagagatttagctactca 163  Q
    |||||||||||||||||||||||||||||    
T  4387 acctaatctctaagagatttagctactca 4415  T

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Target: scaffold0520; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 163
Target Start/End: Original strand, 8626 - 8654
Alignment:
Q  135 acctaatctctaagagatttagctactca 163  Q
    |||||||||||||||||||||||||||||    
T  8626 acctaatctctaagagatttagctactca 8654  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 82 - 114
Alignment:
Q  135 acctaatctctaagagatttagctactcataat 167  Q
    ||||||| |||||||||||||||||||||||||    
T  82 acctaatttctaagagatttagctactcataat 114  T

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