View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_high_1 (Length: 846)
Name: NF2881_high_1
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 615; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 18 - 660
Target Start/End: Complemental strand, 11556600 - 11555958
Alignment:
| Q |
18 |
tgataatgtgtggggttggcattcgaaatgtggtggtgatatctcgattaaatcgtcatacaaggtgttggaaggtttgtccatgaaaagtgttagcttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556600 |
tgataatgtgtggggttggcattcgaaatgtggtggtgatatctcgattaaatcgtcatacaaggtgttggaaggtttgtccatgaaaagtgttagcttt |
11556501 |
T |
|
| Q |
118 |
tgcatggaaacttcttagtcgtattccaactaaaggtaatctagtgttgtgtcatgctctactgttggattcttctacagattgtgtgttttgtgccggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11556500 |
tgcatggaaacttcttagtcgtattccaactaaaggtaatctagtgttgtgtcatgctctacagttggattcttctacagattgtgtgttttgtgccggt |
11556401 |
T |
|
| Q |
218 |
tgggcagaaacttcatggtcttattccaactaaagttaatctatttttacattgttaagtttcttataaggtgtggtctaatgtgcttaaattactcaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556400 |
tgggcagaaacttcatggtcttattccaactaaagataatctatttttacattgttaagtttcttataaggtgtggtctaatgtgcttaaattactcaat |
11556301 |
T |
|
| Q |
318 |
aaaatctgctttcgcagtaggaaattgtgtaggtattggattatttggcagctattatttaggttatgtggaagtcaaaaaatgagattatttttgaaag |
417 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556300 |
aaaatctgcttttgcagtaggaaattgtgtaggtattggattatttggcagctattatttaggttatgtggaagtcaaaaaatgagattatttttgaaag |
11556201 |
T |
|
| Q |
418 |
catgtccaacgatgttagtttgtgttactgttgattttggtgtttggtccccaactaagggttgtgtttcggtttggtgttgtaggagtttatcgtgttt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11556200 |
catgtccaacgatgttagtttgtgttactgttgattttggtgtttgatccccaactaagggttgtgtttcggtttggtgttgtaggagtttgtcgtgttt |
11556101 |
T |
|
| Q |
518 |
tattgctgtctcgattaaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaattta |
617 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556100 |
tattgctgtctcgattaaatcgtcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaattta |
11556001 |
T |
|
| Q |
618 |
tcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
660 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556000 |
tcgaaaagcctagctgcgtctatggtgttttatttctgtctga |
11555958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 433 - 660
Target Start/End: Complemental strand, 11530688 - 11530461
Alignment:
| Q |
433 |
tagtttgtgttactgttgattttggtgtttggtccccaactaagggttgtgtttcggtttggtgttgtaggagtttatcgtgttttattgctgtctcgat |
532 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11530688 |
tagtttgtgttattgttgattttggtgtttggtccccaactaagggttgtgtttcggtttggtgttgtaggagtttgtcgtgttttattgctgtctcgat |
11530589 |
T |
|
| Q |
533 |
taaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagct |
632 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11530588 |
taaatcctcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagct |
11530489 |
T |
|
| Q |
633 |
gcgtctatggtgttttatttctgtctga |
660 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11530488 |
gcgtctatggtgttttatttctgtctga |
11530461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 193 - 436
Target Start/End: Complemental strand, 11530964 - 11530721
Alignment:
| Q |
193 |
tacagattgtgtgttttgtgccggttgggcagaaacttcatggtcttattccaactaaagttaatctatttttacattgttaagtttcttataaggtgtg |
292 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11530964 |
tacagattgtgtgttttgtgccggtcgggaggaaacttcatggtcttattccaactaaaggtaatctatttttacattgttaagtttcttataaggtgtg |
11530865 |
T |
|
| Q |
293 |
gtctaatgtgcttaaattactcaataaaatctgctttcgcagtaggaaattgtgtaggtattggattatttggcagctattatttaggttatgtggaagt |
392 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
11530864 |
gtctaatgtgcttaaattactcaataaaatctgcttttgcagtaggaaattctgtaggtactggattatttggcagctgttatttaggttatgtggaagt |
11530765 |
T |
|
| Q |
393 |
caaaaaatgagattatttttgaaagcatgtccaacgatgttagt |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11530764 |
caaaaaatgagattatttttgaaagcatgtccaacgatgttagt |
11530721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 11531100 - 11530963
Alignment:
| Q |
18 |
tgataatgtgtggggttggcattcgaaatgtggtggtgatatctcgattaaatcgtcatacaaggtgttggaaggtttgtccatgaaaagtgttagcttt |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11531100 |
tgatgatgtgtggggttggcattcgaaatgtggtggtgatatctcgattaaatcgtcatataaggtgttggaaggtttgtccatgaaaagtgttagcttt |
11531001 |
T |
|
| Q |
118 |
tgcatggaaacttcttagtcgtattccaactaaaggta |
155 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
11531000 |
tgcatggaaacttcttagtcgtattccaactaaaggta |
11530963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 744 - 839
Target Start/End: Complemental strand, 11555891 - 11555796
Alignment:
| Q |
744 |
caagtgactgtaaattatggtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttcatctc |
839 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
11555891 |
caagtgactgtaaattatagtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttcttctc |
11555796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 776 - 839
Target Start/End: Complemental strand, 11530213 - 11530150
Alignment:
| Q |
776 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttcatctc |
839 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
11530213 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttcttctc |
11530150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 11530595 - 11530557
Alignment:
| Q |
59 |
tctcgattaaatcgtcatacaaggtgttggaaggtttgt |
97 |
Q |
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||||||||||||| |||||||||||||||||| |||||| |
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| T |
11530595 |
tctcgattaaatcctcatacaaggtgttggaaagtttgt |
11530557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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