View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_high_2 (Length: 545)
Name: NF2881_high_2
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 9165475 - 9164941
Alignment:
| Q |
18 |
attaggtaattaggtatggatttatttatggaaatatgtatttttggacttttatcctccataaggagggttgactagatgaaagataatttaatagtaa |
117 |
Q |
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| T |
9165475 |
attaggtaattaggtatggatttatttatggaaatatgtatttttggacttttatcctccataaggagggttgactagatgaaagataatttaatagtaa |
9165376 |
T |
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| Q |
118 |
aagatagacaaaggaaactataggccaaaccattgggagagatttggaggtaaatggtctatctgagcaaactcttatcagttacccttgtttatctgtt |
217 |
Q |
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| T |
9165375 |
aagatagacaaaggaaactataggccaaaccattgggagagatttggaggtaaatggtctatctgagcaaactcttatcagttacccttgtttatctgtt |
9165276 |
T |
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| Q |
218 |
acttgagttacgatttgacccagctttaggaacctaacccatgagactggtgacaggcgtccttaatatttatatcttttggaaaattctacatat---- |
313 |
Q |
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| T |
9165275 |
agttgagttacgatttgacccagctttaggaacctaacccatgagactggtgacaggcgtccttgatatttatatcttttggaaaattgtacatatagag |
9165176 |
T |
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| Q |
314 |
-----------gtggatgtggacaattccatatttggtttctttggtcttgttgattcaagcattccttgttaagttactcttttaatcataattgcagg |
402 |
Q |
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| T |
9165175 |
tataacatggagtggatgtggacaattccatatttggtttctttggtcttgttgattcaagcattccttgttaagttactcttttaatcataattgcagg |
9165076 |
T |
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| Q |
403 |
atgatgataatgaggaggaggaggatgaagataatgaagaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtgg |
502 |
Q |
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| T |
9165075 |
atgatgatgatgatgaggaggaggatgaagataatgacgaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtgg |
9164976 |
T |
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| Q |
503 |
tccgagtgaatctgatgaagaggatgatgatgatg |
537 |
Q |
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| T |
9164975 |
tccgagtgaatctgatgaagaggatgctgatgatg |
9164941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 314 - 529
Target Start/End: Complemental strand, 9152335 - 9152123
Alignment:
| Q |
314 |
gtggatgtggacaattccatatttggtttctttggtcttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggatgatgataat |
413 |
Q |
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| T |
9152335 |
gtggatgaggaaaattccatatttggtttctttggttttgttgattcaagcattccttgttaagttactcttttaatcataattgcaggacgatgag--- |
9152239 |
T |
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| Q |
414 |
gaggaggaggaggatgaagataatgaagaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaat |
513 |
Q |
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| T |
9152238 |
gaggaggaggaggatgaagataatgaagaagggggaggtctgagtaaatctgggaaagagctgaagaagctgcttgggcgaactggtggtctaagtgaat |
9152139 |
T |
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| Q |
514 |
ctgatgaagaggatga |
529 |
Q |
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| T |
9152138 |
ctgatgatgatgatga |
9152123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 532
Target Start/End: Original strand, 9179434 - 9179532
Alignment:
| Q |
435 |
aatgaagaag--ggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaatctgatgaagaggatgatga |
532 |
Q |
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| T |
9179434 |
aatgaagaagaagggaaggtctgagtaaatctgggaaagagatgaagaagctgctt-ggtgagctggtggtctaagtgaatccgatgcagatgacgatga |
9179532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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