View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_high_4 (Length: 424)
Name: NF2881_high_4
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_high_4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 22045363 - 22044941
Alignment:
| Q |
1 |
tataattctttccatttgtatatcaaagcaaaataatattaacgtttctaatgtaaatacataaattcactnnnnnnnnntaaacaaaccatctcttatt |
100 |
Q |
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| T |
22045363 |
tataattctttccatttgtatatcaaagcaaaataataataatgtttctaatgtaaatacataaattcactaaaaaaata-aaataaaccatctcttatt |
22045265 |
T |
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| Q |
101 |
ttctttata--ggttaatttgcaatttcttagaaaatatgtaaacaaaattttcaaagcatcaatattgatgattaagcaagtccaagacaatttcttga |
198 |
Q |
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| T |
22045264 |
ttctttatataggttaatatgcaatttcttagaaaatatgtaaacaaaattttcaaagtatcaatattgatgattaaacaagtccaagacaatttcttga |
22045165 |
T |
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| Q |
199 |
ttccattatcactatcaatcaatctaagttctttcattcatattctccaaatccaagatattatttactatactcttacactctagcacactcattatta |
298 |
Q |
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| T |
22045164 |
ttccattatgactatcaatcaatctaagttctttcattcatattctccaaatccaagatacaatttactatactcttacactctagcacactcattatta |
22045065 |
T |
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| Q |
299 |
aatctaccaccattgaaagtatgttacaggaatcttatgcttgctaacttctctctcaattaatttactatctatgtaaacttagataacttataatcat |
398 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
22045064 |
aatctatgaccattgaaagtatattacaggaatcttatgcttgctaatttctttctcaattaatttactatgtatgtaaacttagctaacttataatca- |
22044966 |
T |
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| Q |
399 |
tttatcctagatagtacttttcccta |
424 |
Q |
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|||| ||| |||||||||||||||| |
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| T |
22044965 |
-ttattctacatagtacttttcccta |
22044941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 194 - 335
Target Start/End: Complemental strand, 31774050 - 31773908
Alignment:
| Q |
194 |
cttgattccattatcactatcaatcaatctaagttctttcattcatattctccaaatccaagatattattt---actatactcttacactctagcacact |
290 |
Q |
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| T |
31774050 |
cttgattccattatcactatcaatcaatctaagttatttgattcatattctccaaatccaatctattttttttcactat--tcttacactctaacacatt |
31773953 |
T |
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| Q |
291 |
cattattaaatctaccaccattgaaagtatgttacaggaatctta |
335 |
Q |
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| T |
31773952 |
cattattaactctatgaccattcaaagtatgtcggaggaatctta |
31773908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 31774191 - 31774098
Alignment:
| Q |
81 |
taaacaaaccatctcttattttctttataggttaatttgcaatttcttagaaaatatgtaaacaaaattttcaaagcatcaatattgatgatta |
174 |
Q |
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| T |
31774191 |
taaacaaaccatctcttattgtctttataggtttatttataatttcttatacaatttttacacaaaattttcaatgcatcactgttgatgatta |
31774098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 22044828 - 22044763
Alignment:
| Q |
275 |
tacactctagcacactcattattaaatctaccaccattgaaagtatgttacaggaatcttatgctt |
340 |
Q |
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| T |
22044828 |
tacactctaacacattcatgataaaatctatgaccattcaaaacatgttacaggaatcttatgctt |
22044763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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