View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_high_6 (Length: 363)
Name: NF2881_high_6
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 28280896 - 28280536
Alignment:
| Q |
1 |
ggagccatcggttttcatgtccttggaagcatgatcaggtttggaagatgaagaagccattttctttactgttattcacaaaataaagcttgatttgaaa |
100 |
Q |
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| T |
28280896 |
ggagccatcggttttcatgtccttggaagcatgatcaggtttggaagatgaagaagccattttctttactgttattcacaaaacaaagcttgatttgaaa |
28280797 |
T |
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| Q |
101 |
tggtgagtgagaatgtatgtgtagcgggaatgtatgtaaagc-----------------tgagtagtaacttactcataaccgtttctgttagaggtttt |
183 |
Q |
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| T |
28280796 |
tggtgagtgagaatgtatgtgtagcgggaatgtatgtaaagcatctatatataaataagtgagtagtaacttactcataaccgtttctgttagaggtttt |
28280697 |
T |
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| Q |
184 |
gtgacagctgtcaaacttagttacttgacagttgacagctgtgtgattaaattacttaaagtattgtgattannnnnnnnngttagaaaatgaatgagag |
283 |
Q |
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| T |
28280696 |
gtgacagctgtcaaagttagttacttgacagttgacagctgtgtgattaaattacttatagtattgtgatta-tttttttagttagaaaatgaatgagag |
28280598 |
T |
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| Q |
284 |
catgtttcctttgatatgatgaatcaaattaattttagtgcaaaaatggtattactgaaatttt |
347 |
Q |
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| T |
28280597 |
catgtttcctttg--atgatgaatcaaattaaatttagtgcaaaaacggtattactgaaatttt |
28280536 |
T |
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