View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2881_low_11 (Length: 300)

Name: NF2881_low_11
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2881_low_11
NF2881_low_11
[»] chr4 (14 HSPs)
chr4 (126-289)||(45498857-45499020)
chr4 (126-241)||(36198548-36198662)
chr4 (126-241)||(44289358-44289473)
chr4 (129-241)||(34940610-34940722)
chr4 (126-241)||(37910395-37910510)
chr4 (135-241)||(5787008-5787114)
chr4 (126-216)||(34514159-34514249)
chr4 (152-241)||(34510550-34510639)
chr4 (19-60)||(3767945-3767986)
chr4 (126-241)||(28115470-28115579)
chr4 (143-240)||(53923985-53924082)
chr4 (22-57)||(28115840-28115875)
chr4 (19-57)||(37910578-37910616)
chr4 (127-168)||(14518600-14518641)
[»] chr8 (11 HSPs)
chr8 (126-241)||(16295652-16295767)
chr8 (126-241)||(16303354-16303469)
chr8 (126-241)||(27696546-27696661)
chr8 (126-237)||(43597148-43597259)
chr8 (126-242)||(40953545-40953661)
chr8 (126-212)||(11656108-11656194)
chr8 (130-241)||(37246480-37246591)
chr8 (126-241)||(42180626-42180740)
chr8 (126-226)||(3174233-3174333)
chr8 (159-241)||(15268995-15269077)
chr8 (128-241)||(511955-512068)
[»] chr6 (9 HSPs)
chr6 (126-241)||(32329655-32329770)
chr6 (126-241)||(391016-391131)
chr6 (126-241)||(9315123-9315238)
chr6 (126-241)||(12255428-12255543)
chr6 (143-241)||(29969559-29969657)
chr6 (126-241)||(10789154-10789269)
chr6 (126-213)||(23404802-23404889)
chr6 (177-241)||(23404881-23404945)
chr6 (22-60)||(32329552-32329590)
[»] chr1 (8 HSPs)
chr1 (126-243)||(17702972-17703089)
chr1 (126-241)||(37346089-37346204)
chr1 (164-244)||(28620586-28620666)
chr1 (176-237)||(19910367-19910428)
chr1 (127-232)||(30952148-30952252)
chr1 (130-207)||(10306573-10306650)
chr1 (19-57)||(28622827-28622865)
chr1 (126-171)||(19910328-19910373)
[»] chr5 (12 HSPs)
chr5 (126-241)||(25346783-25346898)
chr5 (126-241)||(33134402-33134516)
chr5 (126-241)||(29861183-29861298)
chr5 (126-237)||(33007732-33007843)
chr5 (130-241)||(7883522-7883633)
chr5 (126-241)||(31078184-31078299)
chr5 (126-241)||(15921916-15922031)
chr5 (126-213)||(39351585-39351672)
chr5 (126-184)||(21091051-21091109)
chr5 (127-229)||(41841631-41841732)
chr5 (19-57)||(21091178-21091216)
chr5 (19-57)||(33134295-33134333)
[»] chr3 (7 HSPs)
chr3 (126-241)||(40700757-40700872)
chr3 (126-241)||(28457514-28457629)
chr3 (176-244)||(54819597-54819665)
chr3 (138-241)||(21748149-21748242)
chr3 (145-233)||(46663560-46663647)
chr3 (19-57)||(28457698-28457736)
chr3 (20-57)||(40700941-40700978)
[»] chr2 (11 HSPs)
chr2 (127-238)||(19696001-19696112)
chr2 (126-241)||(27339027-27339142)
chr2 (126-241)||(41595556-41595671)
chr2 (127-213)||(13995498-13995584)
chr2 (126-213)||(13349291-13349377)
chr2 (126-216)||(15262180-15262270)
chr2 (127-229)||(33911560-33911661)
chr2 (126-172)||(37485889-37485935)
chr2 (176-216)||(40619462-40619502)
chr2 (127-198)||(15665171-15665242)
chr2 (19-57)||(41595450-41595488)
[»] chr7 (9 HSPs)
chr7 (126-241)||(18502800-18502915)
chr7 (126-241)||(34866174-34866289)
chr7 (126-242)||(17508497-17508613)
chr7 (126-242)||(17544601-17544717)
chr7 (128-191)||(3480528-3480592)
chr7 (249-289)||(8920430-8920470)
chr7 (19-58)||(15672876-15672915)
chr7 (19-57)||(18502991-18503029)
chr7 (126-184)||(34703354-34703412)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 126 - 289
Target Start/End: Complemental strand, 45499020 - 45498857
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||  |||||| ||||| ||||||||||||||||||||||||||    
T  45499020 gttatcatgtgtgcatcaaacacatgatatgattaatgtttatcatgtccttatcatatcctatctcaatccatctttatatcatatcctgcctctatcc 45498921  T
Q  226 tatcatgaccatcaaatggtcccaaatagtcttccatgcttcaatatattcattcattcttcat 289  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  45498920 tatcatgaccatcaaacggacccaaatagtctttcatgcttcaatatattcattcattcttcat 45498857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 36198662 - 36198548
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||| ||| |||||||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  36198662 gttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtacttatcatattctatctctatccaactttatatcatatcatgcctctatcc 36198563  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  36198562 tatc-tgaccatcaaa 36198548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 44289473 - 44289358
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| |||||||||| | |||| ||||||||||||| ||||||||| | |||||||||||| |||||||||||||| |||||||||||    
T  44289473 gttatcatgtgcgcatcaaacacatgagaagattaatgtttatcatgtccttatcatactttatctctatccagctttatatcatatcatgcctctatcc 44289374  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  44289373 tatcctgaccatcaaa 44289358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 241
Target Start/End: Original strand, 34940610 - 34940722
Alignment:
Q  129 atcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctat 228  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||  ||||||| ||  ||||||||||||| |||||||||||| |||||||||||||||    
T  34940610 atcatgtgcgcatcaaacacatgatatgattaatgtttatcatgcccttatcaaatcttatctctatccaattttatatcatattctgcctctatcctat 34940709  T
Q  229 catgaccatcaaa 241  Q
    | |||||||||||    
T  34940710 cctgaccatcaaa 34940722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 37910510 - 37910395
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    ||||||||||| |||| ||||||||||||||||| |||||||||||||  |||||||||  ||||| | ||||  ||||||||||||  || ||||||||    
T  37910510 gttatcatgtgtgcatcaaacacatgatatgattaatgtttatcatgtcattatcatatcctatctttgtccagttttatatcatattatgtctctatcc 37910411  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| ||| |||||||    
T  37910410 tatcctgatcatcaaa 37910395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 5787114 - 5787008
Alignment:
Q  135 tgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgac 234  Q
    ||||||| ||||||||||||  ||| ||||||||||||| ||||||||||| |||||||||||| |||||||||| || |||| ||||||  |||  |||    
T  5787114 tgcgcatcaaacacatgatagtattaatgtttatcatgtccttatcatattctatctctatccagctttatatcacatactgcatctatcacatcccgac 5787015  T
Q  235 catcaaa 241  Q
    |||||||    
T  5787014 catcaaa 5787008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 34514159 - 34514249
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctg 216  Q
    |||||||||||||||| ||||| |||| |||||| ||||||||||| | ||||||||||  ||||||||| || |||||||||||||||||    
T  34514159 gttatcatgtgcgcatcaaacatatgacatgattaatgtttatcatctccttatcatatcttatctctattcagctttatatcatatcctg 34514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 34510639 - 34510550
Alignment:
Q  152 atatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgaccatcaaa 241  Q
    |||||| | ||| |||||||||  |||||||||  |||||||| ||| ||||||||||||||||||||| || |||||||||| ||||||    
T  34510639 atatgaataatgcttatcatgtctttatcatatcctatctctaaccagctttatatcatatcctgcctccattctatcatgactatcaaa 34510550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 3767945 - 3767986
Alignment:
Q  19 ataatgatagcatgcattttctattataatcaataacatacc 60  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  3767945 ataatgatagcatgtattttctattataatcaataacatacc 3767986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 28115579 - 28115470
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||  ||| ||||||||||||||||| ||| ||||||| ||      ||||  |||||||||||| |||||||||||||| ||| ||||||     
T  28115579 gttatcatgtggccatcaaacacatgatatgattaatgcttatcatatt------atatcttatctctatccagctttatatcatatcatgcatctatca 28115486  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| ||| |||||||    
T  28115485 tatcctgatcatcaaa 28115470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 240
Target Start/End: Original strand, 53923985 - 53924082
Alignment:
Q  143 aaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgaccatcaa 240  Q
    |||||||||| |||||| ||| |||| |||||| |||| |||| | |||||||| ||||| ||||  ||||   ||||||||||||| ||||||||||    
T  53923985 aaacacatgacatgattaatgcttattatgttcatatcttattctgtctctatctaacttcatattctatctcacctctatcctatcttgaccatcaa 53924082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 28115875 - 28115840
Alignment:
Q  22 atgatagcatgcattttctattataatcaataacat 57  Q
    ||||||||||||||||||||||||||| ||||||||    
T  28115875 atgatagcatgcattttctattataattaataacat 28115840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 37910616 - 37910578
Alignment:
Q  19 ataatgatagcatgcattttctattataatcaataacat 57  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  37910616 ataatgatagcatgtattttctattataattaataacat 37910578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 14518600 - 14518641
Alignment:
Q  127 ttatcatgtgcgcatgaaacacatgatatgattcatgtttat 168  Q
    ||||| ||||||||| |||||||||||||||| |||||||||    
T  14518600 ttatcttgtgcgcatcaaacacatgatatgatacatgtttat 14518641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 16295652 - 16295767
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||| ||| |||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||| || ||||||||||     
T  16295652 gttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtccttatcatatcatatctctatccagctttatatcatgtcatgcctctatca 16295751  T
Q  226 tatcatgaccatcaaa 241  Q
    ||||||||||||||||    
T  16295752 tatcatgaccatcaaa 16295767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 16303354 - 16303469
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||| ||| |||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||| || ||||||||||     
T  16303354 gttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtccttatcatatcatatctctatccagctttatatcatgtcatgcctctatca 16303453  T
Q  226 tatcatgaccatcaaa 241  Q
    ||||||||||||||||    
T  16303454 tatcatgaccatcaaa 16303469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 27696546 - 27696661
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||| ||| |||||||||||| |||| ||||||||||||| |||||||||| |||| |||||||| |||||||||||||||| ||||||| |    
T  27696546 gttatcatgtgcacattaaacacatgataggattaatgtttatcatgtccttatcatatcatatttctatccagctttatatcatatcctacctctattc 27696645  T
Q  226 tatcatgaccatcaaa 241  Q
    ||||||||||||||||    
T  27696646 tatcatgaccatcaaa 27696661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 126 - 237
Target Start/End: Original strand, 43597148 - 43597259
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||| ||| ||||| |||||| |||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  43597148 gttatcatgtgcccatcaaacatatgataggattaatgtttatcatgtccttatcatatcatatctctatccaactttatatcatatactgcctctatcc 43597247  T
Q  226 tatcatgaccat 237  Q
    |||| |||||||    
T  43597248 tatcctgaccat 43597259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 40953545 - 40953661
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||  |||||||||||| |||||||| ||||| ||||||||||     
T  40953545 gttatcatgtgcgcatcaaacacatgatatgattaatgtttatcatgtcgttatcatatcctatctctatccagctttatataatatcatgcctctatca 40953644  T
Q  226 tatcatgaccatcaaat 242  Q
    |||| ||||||||||||    
T  40953645 tatcctgaccatcaaat 40953661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 11656194 - 11656108
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatat 212  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||  ||||||||||||||||||||||||||    
T  11656194 gttatcatgtacgcatcaaacacatgatatgattaatgtttatcatgtccttatcatatcctatctctatccaactttatatcatat 11656108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 37246480 - 37246591
Alignment:
Q  130 tcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatc 229  Q
    ||||||||  || |||||||||||| |||| || |||||||||| ||||||||||  |||||||||||| |||||||||||||| |||||||||| ||||    
T  37246480 tcatgtgcaaatcaaacacatgataagattaatatttatcatgtccttatcatatcctatctctatccagctttatatcatatcatgcctctatcatatc 37246579  T
Q  230 atgaccatcaaa 241  Q
     | |||||||||    
T  37246580 ctaaccatcaaa 37246591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 42180626 - 42180740
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| ||||  |||||| |||| ||||| ||||||| |||||||||| |||||||||| ||||||||||||||||| || |||||||     
T  42180626 gttatcatgtgcgcatcaaacgtatgataggattaatgtt-atcatgtccttatcatatcatatctctatacaactttatatcatatcttgtctctatca 42180724  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| || ||||||||    
T  42180725 tatcctgtccatcaaa 42180740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 3174233 - 3174333
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||| ||||| |||||||||||| |||| ||||||||||||| ||||||||||  ||| |||||||| |||||||||| || ||| ||||||||    
T  3174233 gttatcatgtacgcatcaaacacatgataggattaatgtttatcatgtccttatcatatcctatatctatccagctttatatcaaattctgtctctatcc 3174332  T
Q  226 t 226  Q
    |    
T  3174333 t 3174333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 15268995 - 15269077
Alignment:
Q  159 tcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgaccatcaaa 241  Q
    |||| |||| |||||| ||||||||| |||||||||| || |||||||||||||| || |||||||||||  |||| ||||||    
T  15268995 tcatatttaacatgtttttatcatatcatatctctattcagctttatatcatatcttgtctctatcctatactgactatcaaa 15269077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 511955 - 512068
Alignment:
Q  128 tatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatccta 227  Q
    ||||||||||| || |||||||||||| |||| ||||||||||| |   ||||||||| | || ||||| || |||||||| |||  |  ||||||| |     
T  511955 tatcatgtgcgaatcaaacacatgataagattaatgtttatcatatctatatcatattttgtcactatcaaattttatatcttattttatctctatcttg 512054  T
Q  228 tcatgaccatcaaa 241  Q
    || |||||||||||    
T  512055 tcttgaccatcaaa 512068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 32329655 - 32329770
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||  ||||||||||||  |||||||||||||| |||||||||     
T  32329655 gttatcatgtgcgtatcaaacacatgatatgattaatgtttatcatgtccttatcatatcttatctctatccagttttatatcatatcccgcctctatct 32329754  T
Q  226 tatcatgaccatcaaa 241  Q
    ||||||||||||||||    
T  32329755 tatcatgaccatcaaa 32329770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 391131 - 391016
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||| ||| |||||||||||| |||| |||||||||||||  |||||||||  |||||||||||| ||||||||||||| |||||||||||     
T  391131 gttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtctttatcatatcttatctctatccagctttatatcatattctgcctctatca 391032  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  391031 tatcctgaccatcaaa 391016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 9315123 - 9315238
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||  ||| ||||||||  || ||||||||    
T  9315123 gttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgtccttatcatatcatatctctatccagttttgtatcatattatgtctctatcc 9315222  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  9315223 tatcttgaccatcaaa 9315238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 12255428 - 12255543
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||||  |||| ||||  ||||||||||||  |||||||||||| |||| |||||||    
T  12255428 gttatcatgtgcgcatcaaacacatgataagattaatgtttatcatgtctttataatatcctatctctatccagttttatatcatattctgcttctatcc 12255527  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  12255528 tatcctgaccatcaaa 12255543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 29969657 - 29969559
Alignment:
Q  143 aaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgaccatcaaa 241  Q
    |||||||||||| |||| ||||||||||||| |||||||||| |||||||| ||||| ||||||||||||| ||| | |||||||||||||||||||||    
T  29969657 aaacacatgataggattaatgtttatcatgtccttatcatatcatatctctgtccaattttatatcatatcatgcatttatcctatcatgaccatcaaa 29969559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 10789269 - 10789154
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||| ||||| |||||||||||| |||| |||||||| || | ||||||||||  |||||||||| | ||||||||||||| || | | |||||    
T  10789269 gttatcatgttcgcatcaaacacatgataagattaatgtttattatatccttatcatatcttatctctatctagctttatatcatatactacatatatcc 10789170  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  10789169 tatcttgaccatcaaa 10789154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 23404802 - 23404889
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatc 213  Q
    |||||||||||| ||| ||||||||||||  ||| ||||||||||||| ||||||||||  ||||| |||||| ||||||||||||||    
T  23404802 gttatcatgtgcacatcaaacacatgataatattaatgtttatcatgtccttatcatatcttatctttatccagctttatatcatatc 23404889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 23404881 - 23404945
Alignment:
Q  177 tatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgaccatcaaa 241  Q
    ||||||||  ||||| |||||| |||||||||||||| ||||||| || |||| |||||||||||    
T  23404881 tatcatatcttatctttatccagctttatatcatatcatgcctctgtcatatcctgaccatcaaa 23404945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 32329552 - 32329590
Alignment:
Q  22 atgatagcatgcattttctattataatcaataacatacc 60  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  32329552 atgatagcatgtattttctattataattaataacatacc 32329590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 17702972 - 17703089
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    ||||||||||| |||| ||| |||||||| |||| ||| |||||||||  |||||||||  ||||||||||||||||||||| ||||||||||||||||     
T  17702972 gttatcatgtgtgcatcaaaaacatgataggattaatgcttatcatgtctttatcatatcttatctctatccaactttatataatatcctgcctctatct 17703071  T
Q  226 tatcatgaccatcaaatg 243  Q
    ||||||||||||||||||    
T  17703072 tatcatgaccatcaaatg 17703089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 37346204 - 37346089
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||||  |||||||||||| |||||||||| |||||| ||| ||||    
T  37346204 gttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgtccttatcatatcctatctctatccagctttatatcacatcctgtctccatcc 37346105  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| | |||||||||    
T  37346104 tatcctaaccatcaaa 37346089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 244
Target Start/End: Complemental strand, 28620666 - 28620586
Alignment:
Q  164 tttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgaccatcaaatgg 244  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  28620666 tttatcatgttcttatcatatcctatctctatccagctttatatcatatcatgcctttatcctatcatgaccatcaaatgg 28620586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 19910367 - 19910428
Alignment:
Q  176 ttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgaccat 237  Q
    |||||||||  ||| ||||||||||||||||||||||  || ||||||||||||||||||||    
T  19910367 ttatcatatcttatttctatccaactttatatcatatattgtctctatcctatcatgaccat 19910428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 30952148 - 30952252
Alignment:
Q  127 ttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcct 226  Q
    ||||||||||||||| |||||||||||| |||  ||||| ||||| |   |||||||| || ||||||||||| || |||||||||| || |||||| ||    
T  30952148 ttatcatgtgcgcatcaaacacatgataggataaatgtt-atcatatctatatcatatcatgtctctatccaatttcatatcatatcatgtctctattct 30952246  T
Q  227 atcatg 232  Q
    ||||||    
T  30952247 atcatg 30952252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 10306650 - 10306573
Alignment:
Q  130 tcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatat 207  Q
    |||||||| ||| |||||| |||||||||| ||||||||||||| | ||||||||  | ||| ||||||| |||||||    
T  10306650 tcatgtgcacatcaaacacgtgatatgattaatgtttatcatgtacatatcatatcttgtctttatccaattttatat 10306573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 28622865 - 28622827
Alignment:
Q  19 ataatgatagcatgcattttctattataatcaataacat 57  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  28622865 ataatgatagcatgtattttctattataattaataacat 28622827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 19910328 - 19910373
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcat 171  Q
    ||||||||| |||||| |||||||||||| |||| |||||||||||    
T  19910328 gttatcatgggcgcatcaaacacatgataggattaatgtttatcat 19910373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 25346898 - 25346783
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||||  |||||||||  || |||||||||||||||||||||||| ||| ||||||     
T  25346898 gttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgtctttatcatatcctaactctatccaactttatatcatatcttgcttctatct 25346799  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  25346798 tatcctgaccatcaaa 25346783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 33134402 - 33134516
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| |||||||||||| |||| ||||| |||||||  |||||||||  ||||||||||||||||||||||||||  |||||||||||    
T  33134402 gttatcatgtgcgcatcaaacacatgataggattaatgtt-atcatgtctttatcatatcttatctctatccaactttatatcatattatgcctctatcc 33134500  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||| ||||||    
T  33134501 tatcctgactatcaaa 33134516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 29861183 - 29861298
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||| ||| |||||||||||| |||| |||||||||||||  |||||||||  |||||||||||||||||||||||||||  |||| | ||     
T  29861183 gttatcatgtgcacatcaaacacatgataagattaatgtttatcatgtcattatcatatcttatctctatccaactttatatcatatcacgcctttgtca 29861282  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  29861283 tatcctgaccatcaaa 29861298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 33007843 - 33007732
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    ||||||||||| |||| ||||||||||||||||| ||  |||||||||  |||||||||  |||||||||||| |||||||||||||||| ||||||| |    
T  33007843 gttatcatgtgtgcatcaaacacatgatatgattaatacttatcatgtcattatcatatcttatctctatccagctttatatcatatccttcctctattc 33007744  T
Q  226 tatcatgaccat 237  Q
    |||| |||||||    
T  33007743 tatcctgaccat 33007732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 7883633 - 7883522
Alignment:
Q  130 tcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatc 229  Q
    |||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||  ||||||||  ||| ||| ||||||||||||  | |||||||||    
T  7883633 tcatgtgcgcatcaaacacatgatatgattaatgtttaacatgtccttatcatatcctatctctacacaaatttgtatcatatcctgtttatatcctatc 7883534  T
Q  230 atgaccatcaaa 241  Q
     |||||||||||    
T  7883533 ctgaccatcaaa 7883522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 31078184 - 31078299
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| ||||||||||||  ||| |||||||||||||  |||||||||||||||| ||| ||  ||||||||||||| || || | |||    
T  31078184 gttatcatgtgcgcatcaaacacatgatagaattaatgtttatcatgtctttatcatattatatctttattcagttttatatcatatcatgtctttgtcc 31078283  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  31078284 tatcttgaccatcaaa 31078299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 15922031 - 15921916
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||| | ||| |||||||| || | |||||||||||||  |||||||||| ||| | |||||| |||||||||||||  ||||||||||     
T  15922031 gttatcatgtgcgcttcaaatacatgataggaataatgtttatcatgtctttatcatattctatttatatccagctttatatcatattatgcctctatca 15921932  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| | |||||||||    
T  15921931 tatcctaaccatcaaa 15921916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 39351585 - 39351672
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatc 213  Q
    |||||||||||||||| ||||||||||||||||| |||  |||||||| | ||| ||||||| |||||||||| |||| ||| |||||    
T  39351585 gttatcatgtgcgcatcaaacacatgatatgattaatgcatatcatgtccatattatattatgtctctatccagctttgtattatatc 39351672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 21091109 - 21091051
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatat 184  Q
    |||||||||||||||| |||||||||||| |||| | ||||||||||| ||||||||||    
T  21091109 gttatcatgtgcgcatcaaacacatgataggattaaggtttatcatgtccttatcatat 21091051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 41841732 - 41841631
Alignment:
Q  127 ttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcct 226  Q
    ||||||||||||||| |||||| ||||| |||   |||| ||||||||| ||||||||| ||||| ||||||  || ||||||||||  | |||||||||    
T  41841732 ttatcatgtgcgcatcaaacacgtgataggataagtgtt-atcatgttcatatcatattttatctttatccagtttaatatcatatcacgtctctatcct 41841634  T
Q  227 atc 229  Q
    |||    
T  41841633 atc 41841631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 21091216 - 21091178
Alignment:
Q  19 ataatgatagcatgcattttctattataatcaataacat 57  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  21091216 ataatgatagcatgtattttctattataattaataacat 21091178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 33134295 - 33134333
Alignment:
Q  19 ataatgatagcatgcattttctattataatcaataacat 57  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  33134295 ataatgatagcatgtattttctattataattaataacat 33134333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 40700872 - 40700757
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    ||||||||||| |||| |||||||||||| |||| ||||||||||||| ||||||||||  |||||||||||| |||||||||||||| ||||| ||||     
T  40700872 gttatcatgtgtgcatcaaacacatgataggattaatgtttatcatgtccttatcatatcctatctctatccagctttatatcatatcttgcctttatca 40700773  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  40700772 tatcctgaccatcaaa 40700757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 28457629 - 28457514
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| ||||| |||||| |||| |||||||||||||  || |||||| |||| ||||| ||||||||||||||||| || |||||||     
T  28457629 gttatcatgtgcgcatcaaacatatgataggattgatgtttatcatgtcattgtcatatcatatatctattcaactttatatcatatcttgactctatct 28457530  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  28457529 tatcctgaccatcaaa 28457514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 54819665 - 54819597
Alignment:
Q  176 ttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgaccatcaaatgg 244  Q
    |||||||||  ||||||||||||  ||||||||||||| ||||||| ||||||| ||||||||||||||    
T  54819665 ttatcatatcctatctctatccagttttatatcatatcatgcctctctcctatcttgaccatcaaatgg 54819597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 21748242 - 21748149
Alignment:
Q  138 gcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatgaccat 237  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||||||  |||          |||||||||||||| || |||||||||||| |||||||    
T  21748242 gcatcaaacacatgatatgattaatgtttatcatgtccttatcatatcctat----------ctttatatcatatcttgtctctatcctatcctgaccat 21748153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 46663560 - 46663647
Alignment:
Q  145 acacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcctatcatga 233  Q
    ||||||||||  ||| ||||||||||| ||| ||||||||||| ||| ||| ||||| ||||||||||| || ||||||| || |||||    
T  46663560 acacatgatagaattaatgtttatcat-ttcatatcatattatgtctttatacaactctatatcatatcttgtctctatcttaacatga 46663647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 28457736 - 28457698
Alignment:
Q  19 ataatgatagcatgcattttctattataatcaataacat 57  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  28457736 ataatgatagcatgcattttctattataattactaacat 28457698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 40700978 - 40700941
Alignment:
Q  20 taatgatagcatgcattttctattataatcaataacat 57  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  40700978 taatgatagcatgtattttctattataattaataacat 40700941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 19696001 - 19696112
Alignment:
Q  127 ttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcct 226  Q
    ||||||||||| ||| |||||||| ||| |||| ||||||||||||| |||||| ||| |||| ||||||||||||||||||||||  || |||||||||    
T  19696001 ttatcatgtgcacatcaaacacataataagattaatgtttatcatgtccttatcgtatcatatttctatccaactttatatcatattatgtctctatcct 19696100  T
Q  227 atcatgaccatc 238  Q
    ||||||||||||    
T  19696101 atcatgaccatc 19696112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 27339027 - 27339142
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||     ||||||||   ||||||||| | |||||||||||||||||||||| ||||    
T  27339027 gttatcatgtgcgcatcaaacacatgatatgattaatgtttatcaaaactttatcataccctatctctattctactttatatcatatcctgcctcgatcc 27339126  T
Q  226 tatcatgaccatcaaa 241  Q
    ||||||||||||||||    
T  27339127 tatcatgaccatcaaa 27339142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 241
Target Start/End: Original strand, 41595556 - 41595671
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    ||||| |||||| ||| |||||||| ||| |||| |||||||||||||  |||||||||  ||||| |||| |||||||||| ||||| ||| |||||||    
T  41595556 gttattatgtgcacatcaaacacataataggattaatgtttatcatgtcattatcatatcttatctatatctaactttatattatatcttgcatctatcc 41595655  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  41595656 tatcctgaccatcaaa 41595671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 13995584 - 13995498
Alignment:
Q  127 ttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatc 213  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||||| ||| ||||||  ||| |||||||| ||||||||||||||    
T  13995584 ttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgtccttgtcatatcctatatctatccagctttatatcatatc 13995498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 13349377 - 13349291
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatc 213  Q
    |||||||| ||||||| ||||||| |||| |||| || |||||||| | ||||||||||| ||||||||||||| |||||||||||||    
T  13349377 gttatcatatgcgcatcaaacacacgataggattaat-tttatcatatccttatcatattctatctctatccaattttatatcatatc 13349291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 216
Target Start/End: Complemental strand, 15262270 - 15262180
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctg 216  Q
    ||||||||||| |||| |||||||||||  |||  ||||||||| | |   ||||||||| | |||||||||||||| |||||||||||||    
T  15262270 gttatcatgtgtgcatcaaacacatgatgagataaatgtttatcctatctatatcatattctgtctctatccaacttcatatcatatcctg 15262180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 229
Target Start/End: Complemental strand, 33911661 - 33911560
Alignment:
Q  127 ttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcct 226  Q
    ||||||||||||||| |||||||| ||| |||   |||| |||||||   |||| ||| |||||||||||||| |||||||||| || || |||||||||    
T  33911661 ttatcatgtgcgcatcaaacacataataggataagtgtt-atcatgtctatatcctataatatctctatccaattttatatcatgtcatgtctctatcct 33911563  T
Q  227 atc 229  Q
    |||    
T  33911562 atc 33911560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 37485889 - 37485935
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatg 172  Q
    |||||||||||| ||| ||||||||||||||||| ||||||||||||    
T  37485889 gttatcatgtgcacatcaaacacatgatatgattaatgtttatcatg 37485935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 40619502 - 40619462
Alignment:
Q  176 ttatcatattatatctctatccaactttatatcatatcctg 216  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  40619502 ttatcatatcttatctctatccaactttatatcatatcctg 40619462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 15665242 - 15665171
Alignment:
Q  127 ttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatcca 198  Q
    |||||||||| |||| |||||||||||| |||| || |||||||||  | |||||||| || ||||||||||    
T  15665242 ttatcatgtgtgcataaaacacatgataagattaatatttatcatgcccatatcatatcatgtctctatcca 15665171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 41595450 - 41595488
Alignment:
Q  19 ataatgatagcatgcattttctattataatcaataacat 57  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  41595450 ataatgatagcatgtattttctattataattaataacat 41595488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 18502915 - 18502800
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||| ||| | ||||||||||||  ||| ||||||||||||| ||||| ||||  ||||||||||||||||||||| ||||  |||||||||||    
T  18502915 gttatcatgtacgcttcaaacacatgatagtattaatgtttatcatgtccttattatatcctatctctatccaactttatattatatgttgcctctatcc 18502816  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| |||||||||||    
T  18502815 tatcttgaccatcaaa 18502800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 34866289 - 34866174
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||||  |||||||||| |||||| ||| |||||||||||||||| | ||| ||||     
T  34866289 gttatcatgtgcgcatcaaacacatgataagattaatgtttatcatgtcattatcatattttatctccatctaactttatatcatatcttacctgtatca 34866190  T
Q  226 tatcatgaccatcaaa 241  Q
    |||| ||| |||||||    
T  34866189 tatcctgaacatcaaa 34866174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 242
Target Start/End: Complemental strand, 17508613 - 17508497
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||| ||||| ||| ||||||||||||| ||  ||||||||| | | ||||||| | ||||||||||| |||||||| |||| || |||||||     
T  17508613 gttatcatgtacgcatcaaatacatgatatgattaatacttatcatgtccatgtcatattctgtctctatccaattttatatcctatcatgtctctatca 17508514  T
Q  226 tatcatgaccatcaaat 242  Q
    | ||  |||||||||||    
T  17508513 tgtcccgaccatcaaat 17508497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 242
Target Start/End: Original strand, 17544601 - 17544717
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatattatatctctatccaactttatatcatatcctgcctctatcc 225  Q
    |||||||||| ||||| ||| ||||||||||||| ||  ||||||||| | | ||||||| | ||||||||||| |||||||| |||| || |||||||     
T  17544601 gttatcatgtacgcatcaaatacatgatatgattaatacttatcatgtccatgtcatattctgtctctatccaattttatatcctatcatgtctctatca 17544700  T
Q  226 tatcatgaccatcaaat 242  Q
    | ||  |||||||||||    
T  17544701 tgtcccgaccatcaaat 17544717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 3480592 - 3480528
Alignment:
Q  128 tatcatgtgcgcatgaaacacatgat-atgattcatgtttatcatgttcttatcatattatatct 191  Q
    |||||||||||||| ||||||||||| |||| | ||||||||||| ||| ||||||||| |||||    
T  3480592 tatcatgtgcgcatcaaacacatgataatgagtaatgtttatcattttcatatcatattttatct 3480528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 8920470 - 8920430
Alignment:
Q  249 aaatagtcttccatgcttcaatatattcattcattcttcat 289  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  8920470 aaatagtcttgcatgcttcaatatattcattcgttcttcat 8920430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 15672915 - 15672876
Alignment:
Q  19 ataatgatagcatgcattttctattataatcaataacata 58  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  15672915 ataatgatagcatgtattttctattataattaataacata 15672876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 18503029 - 18502991
Alignment:
Q  19 ataatgatagcatgcattttctattataatcaataacat 57  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  18503029 ataatgatagcatgtattttctattataattaataacat 18502991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 34703354 - 34703412
Alignment:
Q  126 gttatcatgtgcgcatgaaacacatgatatgattcatgtttatcatgttcttatcatat 184  Q
    |||||||||||||| | ||| |||||||| |||| ||||||||||||| ||| ||||||    
T  34703354 gttatcatgtgcgcgtaaaatacatgataggattaatgtttatcatgtccttgtcatat 34703412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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