View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_low_13 (Length: 248)
Name: NF2881_low_13
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 30363583 - 30363690
Alignment:
| Q |
126 |
aaacttttgaacgttcaaacttttgatcattgaatgtttacttcgttgttatattaatttacggatgtatcgaaattacgaataaatttacatgtgtcta |
225 |
Q |
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| T |
30363583 |
aaacttttgaacgttctaattttttattattgaatgtttacttcgttgttatattaatttacggatgtatcgaaattatgaataaatttacatgtgtcta |
30363682 |
T |
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| Q |
226 |
ttttatta |
233 |
Q |
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| T |
30363683 |
ttttatta |
30363690 |
T |
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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 37083410 - 37083493
Alignment:
| Q |
1 |
tagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttattaata |
85 |
Q |
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| T |
37083410 |
tagagttattgattactgattaacgggtttcatttaagaaatttgtatgtaatgat-ggttaaaaggattgaatgcttattaata |
37083493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 36046737 - 36046650
Alignment:
| Q |
146 |
ttttgatcattgaatgtttacttcgttgttatattaatttacggatgtatcgaaattacgaataaatttacatgtgtctattttatta |
233 |
Q |
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| T |
36046737 |
ttttgatcattaaatgttcatttcgttgttatattgatttacagatgtatcaaaattacgaataaatttacaagtgtttattttatta |
36046650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 33211943 - 33211998
Alignment:
| Q |
130 |
ttttgaacgttcaaacttttgatcattgaatgtttacttcgttgttatattaattt |
185 |
Q |
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| T |
33211943 |
ttttgaacgttcaaactttttatcattgaatgtttacttcaatgttatattgattt |
33211998 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 40861328 - 40861247
Alignment:
| Q |
1 |
tagagttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttatta |
82 |
Q |
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| T |
40861328 |
tagagttattgataaatgattaatgtgtctcgtttaagaaatttgtatgagatttttggttagagagattgaatacttatta |
40861247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 49211058 - 49211098
Alignment:
| Q |
4 |
agttattgataactgattaacgggtctcatttaaggaattt |
44 |
Q |
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| T |
49211058 |
agttattgataattgattaatgggtctcatttaaggaattt |
49211098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 53096701 - 53096622
Alignment:
| Q |
4 |
agttattgataactgattaacgggtctcatttaaggaatttgtatgtgatgatgggttaaagggattgaatgcttattaa |
83 |
Q |
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| T |
53096701 |
agttattgatagttgattagttggtcccatttaagaaatttgtgtgagatgttgggttaaagggattgagttcttattaa |
53096622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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