View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_low_14 (Length: 247)
Name: NF2881_low_14
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 4458475 - 4458715
Alignment:
| Q |
1 |
ctaggcctttgtaatttacatagcccaaacttgagggagggtgttacttaacttaactggttatagttatttacttacactaaccattgttagttgattt |
100 |
Q |
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| T |
4458475 |
ctaggcctttgtaatttacatagcccaaacttgagggagggtgttacttaacttaactggttatagttatttacttacactaaccattgttagttgattt |
4458574 |
T |
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| Q |
101 |
attagttctagttagtacccaaattactacatagatta----nnnnnnnnnnnncacttggtactgttactgattactagaaaaacatttgtacactttt |
196 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4458575 |
attagttctagttagtatccaaattactacatagattagtgtgtgtgtgtgtgtcacttggtactgttactgattactagaaaaacatttctacactttt |
4458674 |
T |
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| Q |
197 |
cactttatatttaatatgaagatgagtttattattcgctct |
237 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||| |
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| T |
4458675 |
cactctatatttaatatgaagatgagtttattattctctct |
4458715 |
T |
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