View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_low_15 (Length: 240)
Name: NF2881_low_15
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 17559839 - 17559614
Alignment:
| Q |
13 |
gcgcaggtttctaaagcaagtgaattgtgacacatagtttagctatatatata--aagtacataagtcaaagtgttggacaaataattgtttcaaatact |
110 |
Q |
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| T |
17559839 |
gcgcaggtttctaaagca-gtgaactgtgactcataatttagctatatatatataaagtacataagtcaaatttttggacaaataattgttacaaatact |
17559741 |
T |
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| Q |
111 |
cccgtgctactcttaattgttgcggtttcaattgcattttgcagtcagattgatttactgcacaatatcactttctgactatgaaatttctgcatatttg |
210 |
Q |
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| T |
17559740 |
cctgtgctactcttaattgttgcggtttcaattgcattttgtagtcagattgatttactgcacaatatcactttctggctatgaaatttctgcatatttg |
17559641 |
T |
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| Q |
211 |
atatttcaattcttcatttttatctgc |
237 |
Q |
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| T |
17559640 |
atatttcaattctgcatttttatctgc |
17559614 |
T |
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