View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_low_16 (Length: 238)
Name: NF2881_low_16
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 22045427 - 22045640
Alignment:
| Q |
1 |
ccacttaaaatgactattccatccggtcatatctataagagaaattttgatgagcaaaagtaaatgtatataaacataaattttgtccaaatatatgaac |
100 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22045427 |
ccacttaaaatgactactccattcggtcatatctataagagaaattttgatgagcaaaagtaaatgtatataaacataaattttgtcgaaatatatgaac |
22045526 |
T |
|
| Q |
101 |
atttggtgttgatatattctcatataaataggaccggatgaagcattatctatcattaatattaggttaaaaaataaataaggaggatgtagacagctat |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
22045527 |
atttggtgttgatatattctcatataaataggaccagatgaagcattatctatcattaatattaggttaaaaaataaataaggaggacgtagacaactat |
22045626 |
T |
|
| Q |
201 |
aagaattgaatagg |
214 |
Q |
| |
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|||||||||||||| |
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| T |
22045627 |
aagaattgaatagg |
22045640 |
T |
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