View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_low_17 (Length: 230)
Name: NF2881_low_17
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 37083049 - 37082853
Alignment:
| Q |
31 |
gcaaacgatcaacgagttacacatgttcttaatcttcaaattcaagaaaggagggatatgtaactttaattgtgaacagggaaaagaatagttcttaatt |
130 |
Q |
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| T |
37083049 |
gcaaacgatcaacgagttacacatgttcttaatctccaaattcaagaaaggagggatatgtaactttaattgtgaacagggaaaagaatacttcttaatt |
37082950 |
T |
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| Q |
131 |
tgtggccattgttttgcacacgacaaaacataaataga---acaaaatacgtgagaccatgagagtgtgtgtactgtgtagggcatgatgtaactta |
224 |
Q |
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| T |
37082949 |
tgtggccattgttttgcacacgacaaaacataaatagaacaacaaaagacgtgagaccatgagagtgtgtgtactgtgtagggcatgatgtaactta |
37082853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 37074214 - 37074128
Alignment:
| Q |
66 |
tcaaattcaagaaaggagggatatgtaactttaattgtgaacagggaaaagaatagttcttaatttgtggccattgttttgcacacg |
152 |
Q |
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| T |
37074214 |
tcaaaatcaagaaaggagggatatgtaactttaattggaaacaggggaaagaattgttcttgaattgtagcgattgatttgcacacg |
37074128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 37076492 - 37076397
Alignment:
| Q |
31 |
gcaaacgatcaacgagttacacatgttcttaatcttcaaattcaagaaaggagggatatgtaactttaattgtgaacagggaaaagaatagttctt |
126 |
Q |
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| T |
37076492 |
gcaaacgatcaacgagtttatcgtgattttaatctttataatcaagaaaggagggatatgttactttaattgtgaacagaggaaagaattgttctt |
37076397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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