View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2881_low_7 (Length: 357)
Name: NF2881_low_7
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 54983329 - 54983655
Alignment:
| Q |
17 |
aatataccgaatgtgtattgcagttatacgaagtaattttaagggccatgtcgaaattagtgaatttggaagaggactgtttccaaaaggaatgtggaga |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54983329 |
aatataccgaatgtgtattgcagttatacgaagtaatcttaagggccatgtcgaaattagtgaatttggaagaggactgtttccaaaaggaatgtggaga |
54983428 |
T |
|
| Q |
117 |
gagagctgcaacgtatatgagaatcaattactaccctccatgtcctaaggctgatcatgttctaggcctgaaggtacattctgatccatcaactataact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54983429 |
gagagctgcaacgtatatgagaatcaattactaccctccatgtcctaaggctgatcatgttctaggcctgaaggtacattctgatccatcaactataact |
54983528 |
T |
|
| Q |
217 |
attctgctgcaagataaagaggttgaaggcctccaagtcctcaaagataacaaatggtttaaagttccaatagtccctgatactctcctgattaatgttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54983529 |
attctgctgcaagataaagaggttgaaggcctccaagtcctcaaagataacaaatggtttaaagttccaatagtccctgatactctcctgattaatgttg |
54983628 |
T |
|
| Q |
317 |
gtgatcaaatggaggtacgtagtaact |
343 |
Q |
| |
|
||||||||||||||||||| ||||||| |
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| T |
54983629 |
gtgatcaaatggaggtacggagtaact |
54983655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 36 - 339
Target Start/End: Original strand, 54962531 - 54962834
Alignment:
| Q |
36 |
gcagttatacgaagtaattttaagggccatgtcgaaattagtgaatttggaagaggactgtttccaaaaggaatgtggagagagagctgcaacgtatatg |
135 |
Q |
| |
|
||||||||| ||| |||||||||| ||| | | |||| | |||| ||||||||||| || |||| |||||||||||||||||||| | ||| || |||| |
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| T |
54962531 |
gcagttatatgaaataattttaagagccgtagcaaaatcactgaacttggaagaggattgcttcctaaaggaatgtggagagagagatacaatgtttatg |
54962630 |
T |
|
| Q |
136 |
agaatcaattactaccctccatgtcctaaggctgatcatgttctaggcctgaaggtacattctgatccatcaactataactattctgctgcaagataaag |
235 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||||||| | ||| |||| ||||| |||| |||||||| || ||||||||||||||| |
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|
| T |
54962631 |
agaatcaattactaccctccatgtcctatgcctgatcatgttctaggcgtaaagccacatgctgatggatcatctataacttttttgctgcaagataaag |
54962730 |
T |
|
| Q |
236 |
aggttgaaggcctccaagtcctcaaagataacaaatggtttaaagttccaatagtccctgatactctcctgattaatgttggtgatcaaatggaggtacg |
335 |
Q |
| |
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|||| |||||||| |||||||| ||||||||| | ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||| | |
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| T |
54962731 |
aggtagaaggccttcaagtcctaaaagataaccagtggtttaaagttccaattatccctgatgctctcgtgattaatgttggtgatcaaatagaggtagg |
54962830 |
T |
|
| Q |
336 |
tagt |
339 |
Q |
| |
|
|||| |
|
|
| T |
54962831 |
tagt |
54962834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 54965815 - 54965876
Alignment:
| Q |
271 |
tggtttaaagttccaatagtccctgatactctcctgattaatgttggtgatcaaatggaggt |
332 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| |
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|
| T |
54965815 |
tggtttaaagttccaatagtccctgatgctctagtgattaatgttggtgatcaaatagaggt |
54965876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 31322054 - 31321728
Alignment:
| Q |
17 |
aatataccgaatgtgtattgcagttatacgaagtaattttaagggccatgtcgaaattagtgaatttggaagaggactgtttccaaaaggaatgtggaga |
116 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||||||||||| |||| |||| | |||| ||||||||||| ||||||| ||||||||||||||| |
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|
| T |
31322054 |
aatataccgaatgtgtctggcagttatatgaagtaattttaagggtcatggcgaagacactgaacttggaagaggattgtttcctaaaggaatgtggaga |
31321955 |
T |
|
| Q |
117 |
gagagctgcaacgtatatgagaatcaattactaccctccatgtcctaaggctgatcatgttctaggcctgaaggtacattctgatccatcaactataact |
216 |
Q |
| |
|
||||| | ||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||| || |||||| |||||||||| ||||| |||||||| |
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|
| T |
31321954 |
gagaggtacaatgtctatgagaaccaattactaccctccatgtcctatggctgatcatgctctggggctgaagccacattctgattcatcatctataact |
31321855 |
T |
|
| Q |
217 |
attctgctgcaagataaagaggttgaaggcctccaagtcctcaaagataacaaatggtttaaagttccaatagtccctgatactctcctgattaatgttg |
316 |
Q |
| |
|
|| |||||||||||||| |||| |||||||||||||| |||||||||||| |||||||| ||||||||| ||| |||| |||| |||||||||||| |
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| T |
31321854 |
tttttgctgcaagataaaaaggtagaaggcctccaagttctcaaagataaccggtggtttaaggttccaataatccatgatgctcttgtgattaatgttg |
31321755 |
T |
|
| Q |
317 |
gtgatcaaatggaggtacgtagtaact |
343 |
Q |
| |
|
||||||||||||||||| ||| ||||| |
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|
| T |
31321754 |
gtgatcaaatggaggtaggtaataact |
31321728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 31329860 - 31329544
Alignment:
| Q |
17 |
aatataccgaatgtgtattgcagttatacgaagtaattttaagggccatgtcgaaattagtgaatttggaagaggactgtttccaaaaggaatgtggaga |
116 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||| |||||| ||||||||| |||| ||| |||| ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
31329860 |
aatataccgaatgtgtctggcagttatatgaagaaattttcagggccatggcgaagttactgaacttggaagaggattgtttcctaaaggaatgtggaga |
31329761 |
T |
|
| Q |
117 |
gagagctgcaacgtatatgagaatcaattactaccctccatgtcctaaggctgatcatgttctaggcctgaaggtacattctgatccatcaactataact |
216 |
Q |
| |
|
||| | | ||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||| || |||||| |||||||||| ||||| |||||||| |
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|
| T |
31329760 |
gaggggtacaatgtctatgagaaccaattactaccctccatgtcctatggctgatcatgctctggggctgaagccacattctgattcatcatctataact |
31329661 |
T |
|
| Q |
217 |
attctgctgcaagataaagaggttgaaggcctccaagtcctcaaagataacaaatggtttaaagttccaatagtccctgatactctcctgattaatgttg |
316 |
Q |
| |
|
|| ||||||||||||| |||| |||||||||||||| |||||||| ||| | |||||||||||||||||| ||| |||| || | |||||||||||| |
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|
| T |
31329660 |
tttttgctgcaagataataaggtagaaggcctccaagttctcaaagacaaccagtggtttaaagttccaataatccatgatgctattgtgattaatgttg |
31329561 |
T |
|
| Q |
317 |
gtgatcaaatggaggta |
333 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
31329560 |
gtgatctaatggaggta |
31329544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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