View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2881_low_8 (Length: 350)
Name: NF2881_low_8
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2881_low_8 |
 | |
|
| [»] scaffold0913 (2 HSPs) |
| | |
|
| [»] scaffold0898 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 48859308 - 48859018
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48859308 |
cacagaccggagtaaatcattcagtttttgccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaa |
48859209 |
T |
|
| Q |
111 |
agaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatccta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48859208 |
agaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatccta |
48859109 |
T |
|
| Q |
211 |
cttgcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattccaaaatctgttttttc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48859108 |
cttgcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattccacgatctgttttttc |
48859018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 13596773 - 13596496
Alignment:
| Q |
20 |
gagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcatc |
119 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||| ||||| |||||||||||| ||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
13596773 |
gagtaaaccattcagtttttgccaaaacaaaattgc----ctcatctcttatacaaacttctattcccactctattagaaagctgggagaaagaagcatc |
13596678 |
T |
|
| Q |
120 |
aatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatca |
219 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
13596677 |
aatattgcacttaaatcttcctttaactggcttgatccatttcacatttccttcttgtcgcaactgtgcacaagatgtattacaaatcctacatgcatct |
13596578 |
T |
|
| Q |
220 |
tgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattccaaaatctgttttttc |
301 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| ||| | |||||| |||| |
|
|
| T |
13596577 |
tgccaatcatgaagcataacattttctctctcaacaacataaactggagcatcaattacctcatcccacactctgttgtttc |
13596496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 23040309 - 23040585
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaa |
110 |
Q |
| |
|
||||||| |||||||| |||||||||||| |||||| |||| ||| |||||||||| ||||||| |||| ||||| ||||||||||||||| | ||||| |
|
|
| T |
23040309 |
cacagactggagtaaaccattcagtttttgccaaaataaaagtgcctgtatcatcctttatacagactcctattcccactctattagaaagctatgagaa |
23040408 |
T |
|
| Q |
111 |
agaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatccta |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||| || | ||||||||||||||||| || |||| |
|
|
| T |
23040409 |
agaagcatcaatattgcactaaaatcttccttgagctggtttgattcatttcacatttccttcttgtcgcggatgtgcacaagatgtattacgaaaccta |
23040508 |
T |
|
| Q |
211 |
cttgcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
| |||||| |||||||||||||| |||| |||| ||||||| | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
23040509 |
cgtgcatcttgccaatcatgaaggataacttttgctctctccataacatagacttgagtatcaattacctcattcca |
23040585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 22911030 - 22910763
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcat |
118 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||| | |||||||||||||||||||| |||| ||||| |||| ||||||||||||| ||||| ||||||| |
|
|
| T |
22911030 |
ggagtaagccatttagtttttgccaaaacaaaagtacatgtatcatcccttatacagactcctattcccactatattagaaagttgtgagaatgaagcat |
22910931 |
T |
|
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||| ||||||| || ||||| |||||| |
|
|
| T |
22910930 |
caatattgcacttaaatcttccttcagctggtttgatccatttcacatttccttcttgtc-cggatgtgcacaagaagtattacgaaacctacgtgcatc |
22910832 |
T |
|
| Q |
219 |
atgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| || ||||| |||||| |||||||||||||||||| |
|
|
| T |
22910831 |
ttgccaatcatgaagcatagtttttgctctctccactacataggcttgagtatcaattacctcattcca |
22910763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 26754743 - 26754459
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaa |
110 |
Q |
| |
|
|||| ||||||||||| || |||| |||| ||||| |||| | ||||||||||||| |||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
26754743 |
cacaaaccggagtaaaccactcagcttttgtcaaaataaaagttcatgtatcatccc------aaactcctattctcactctattataaagttatgagaa |
26754650 |
T |
|
| Q |
111 |
agaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatccta |
210 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |||| ||||||||| | || ||||| ||| || |||||||||||| |
|
|
| T |
26754649 |
agaagcatcaatattgtacttaaatcttccttcacatggtttgattcatttcacgtttctttcttgtcgcgattgtgcacgagacgtgttacaaatccta |
26754550 |
T |
|
| Q |
211 |
cttgcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattccaaaatctgttttttc |
301 |
Q |
| |
|
| |||||| || |||||||||||| ||| |||| ||||||| ||||||||||||||| ||||||||||||||||||| | |||||| |||| |
|
|
| T |
26754549 |
cgtgcatcttgtcaatcatgaagcgtaacttttgctctctccacaacataaacttgatcatcaattacctcattccacactctgttatttc |
26754459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 10260286 - 10260018
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcat |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
10260286 |
ggagtaaaccattcagtttttaccaaaacaaaagtgcatgtatcatcccttatacaaactcctattcccactctagtagaaagttaggagaaagaagcat |
10260187 |
T |
|
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatc |
218 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
10260186 |
caatattggacttaaatcttccttcagctggtttgatcaatttcacatttccttcttgtcgcggttgtgcacaagatgtattacaaatcctacgtgcatc |
10260087 |
T |
|
| Q |
219 |
atgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
10260086 |
ttgccaatcataaagcataacttttgctctctcgacaacataaactggaggatcaattacctcattcca |
10260018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 9605190 - 9605407
Alignment:
| Q |
41 |
ccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcatcaatattgcacttaaatcttcc |
140 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
9605190 |
ccaaaacaaaagtgtttgtatcatcccttatacaaactcttattcccactctaataaaaagttgggagaaagagtcatcaatattgcacttaaatattct |
9605289 |
T |
|
| Q |
141 |
ttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatcatgccaatcatgaagcataatt |
240 |
Q |
| |
|
||||| |||||||||| ||||||||||| ||||||||| |||| |||||||||||||||| ||||||||| |||| ||||||||||||| |||| | |
|
|
| T |
9605290 |
ttcagctggtttgatcaatttcacattttcttcttgtcccggttgtgcacaagatgtattataaatcctacgaacatcttgccaatcatgaatcatagct |
9605389 |
T |
|
| Q |
241 |
tttcctctctcaacaaca |
258 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
9605390 |
tttgctctctcaacaaca |
9605407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 8783405 - 8783108
Alignment:
| Q |
20 |
gagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggag----------- |
108 |
Q |
| |
|
||||||| | |||||||||| ||||| |||| ||| |||||| |||||| ||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
8783405 |
gagtaaaccgttcagtttttgtcaaaataaaagtgcttgtatcgtcccttctacaaactcatattcccactctattagaaagttgggattaaaaaattgg |
8783306 |
T |
|
| Q |
109 |
---aaagaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaaga--tgtattaca |
203 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| | | || || |||||| ||||||||| |
|
|
| T |
8783305 |
gataaagaaacatcaatattgcacttaaatctctcttcaactggtttgatccatttcacaattccttcttcttgcaattgtgtacaagatgtgtattaca |
8783206 |
T |
|
| Q |
204 |
aatcctacttgcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattccaaaatctgttttttc |
301 |
Q |
| |
|
|||| ||| |||||| ||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||| | |||||| |||| |
|
|
| T |
8783205 |
aatcgtacatgcatcttgccattcatgaagcatagctttttctctctccacaacataaacttgagcatcaattacctctttccacactctgttgtttc |
8783108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 151 - 287
Target Start/End: Original strand, 17834555 - 17834691
Alignment:
| Q |
151 |
ttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatcatgccaatcatgaagcataatttttcctctct |
250 |
Q |
| |
|
|||||| |||||||||||||||||||||| || | ||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||| |
|
|
| T |
17834555 |
ttgatcaatttcacatttccttcttgtcgcggatgtgcacaagatgtattacaaatcctatgtgcatcttgccaatcatgaagcataacttttactctct |
17834654 |
T |
|
| Q |
251 |
caacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
| |||||||| ||| |||||||||||||||||||||| |
|
|
| T |
17834655 |
cgacaacatacactggagcatcaattacctcattcca |
17834691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 282
Target Start/End: Original strand, 16912601 - 16912763
Alignment:
| Q |
120 |
aatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatca |
219 |
Q |
| |
|
||||||||||||||||||| ||| || || |||||||||||||||||||||||||||| | || | ||||||| | |||||||||||||||| ||||| |
|
|
| T |
16912601 |
aatattgcacttaaatctttcttaagctgatttgatccatttcacatttccttcttgttgcggatgtgcacaaaacgtattacaaatcctacatgcattt |
16912700 |
T |
|
| Q |
220 |
tgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctca |
282 |
Q |
| |
|
|| ||||||||||||||| |||| ||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
16912701 |
tgtcaatcatgaagcatagcttttgctctctccataacataaacttgagcatcaattacctca |
16912763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 48026353 - 48026629
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaa |
110 |
Q |
| |
|
||||||| | |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
48026353 |
cacagactgaagtaaaccattcagtttttgccaaaacaaaagtgcatgtatcatcccttatacaaactcctattctcactctattagaaagctgggagaa |
48026452 |
T |
|
| Q |
111 |
agaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatccta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||| |
|
|
| T |
48026453 |
agaagcatcaatattgcacttaaatcttccttcagctggtttgatccatttcacatttccttcttgtcgccgatgtccacaagatgtattacaaatccta |
48026552 |
T |
|
| Q |
211 |
cttgcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
| |||||| || |||||||| | ||||| || | ||||||| |||||||||| | |||||||||||||||||||||| |
|
|
| T |
48026553 |
cgtgcatcttgtcaatcatggaccataacttatgctctctcgacaacataaattggagcatcaattacctcattcca |
48026629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 52585887 - 52586155
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcat |
118 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
52585887 |
ggagtaaaccattcagtttttgccaaaacaaaagtgtctgtatcatctcttatacaaactcttattcccactctattagaaagctgggagaaagaagcat |
52585986 |
T |
|
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||||| |
|
|
| T |
52585987 |
caatattgcacttaaatcttccttcagctggtttgatccatttcacatttccttcttgtcgcggatgtgcacaagatgtattacaaatcctacgtgcatc |
52586086 |
T |
|
| Q |
219 |
atgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
| |||||||| || ||||| |||| ||||||| |||| ||||| | |||||||||||||||||||||| |
|
|
| T |
52586087 |
ttaccaatcatcaatcataacttttgctctctcgacaatataaattggagcatcaattacctcattcca |
52586155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 20685262 - 20684994
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcat |
118 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| || ||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||| |
|
|
| T |
20685262 |
ggagtaaacgattcagtttttgccgaaacaaaagtgaatgtaacatcccttatacaaactgctattcccactctattagaaagttgtaagaaagaaacat |
20685163 |
T |
|
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | | ||||||| ||||||||| || ||||| |||||| |
|
|
| T |
20685162 |
caatattgcacttaaatcttccttcagctggtttgatccatttcacatttccttcttgttgcgactgtgcacaaaatgtattacgaaacctacgtgcatc |
20685063 |
T |
|
| Q |
219 |
atgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
20685062 |
ttgccaatcatgaagcatagtttttgctctctccacaacataaacttgaatatcaattacctcattcca |
20684994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 53581151 - 53580878
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatccct-tatacaaactcttattctcactctattagaaagttgggaga |
109 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||||||| |||||||||||||| | ||||||||||| ||||| ||||||||||| || |||| |
|
|
| T |
53581151 |
cacagactagagtaaaccattcagtttttgccaaaacaaaagtgcatgtatcatccttatatacaaactcctattcccactctattagg----tgtgaga |
53581056 |
T |
|
| Q |
110 |
aagaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||| || | | ||||||||||| | | || ||| |
|
|
| T |
53581055 |
aagaagcatcaatattgcacttaaatcttccttgagctggtttgacccatttcacatttccttcttgtcgcggctgtacacaagatgtaatgcgaaacct |
53580956 |
T |
|
| Q |
210 |
acttgcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
|| |||||| |||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
53580955 |
acgtgcatcttgccaatcatgaagcatagcttttgctctctccacaacataaacttgagtatcaattacctcattcca |
53580878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 8726744 - 8726484
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcat |
118 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| ||| ||||| ||||||||||||||||||||| ||||| || | ||||| ||||||| ||||| ||| || |
|
|
| T |
8726744 |
ggagtaaaccattcattttttgccaaaacgaaagtgcatatatcatcccttatacaaactcatattcccattttattaaaaagttgaaagaaataagtat |
8726645 |
T |
|
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatc |
218 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| |||||||||||| ||| || ||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
8726644 |
caattttgcacttaaatcttccttcagctggtttgatctatttcacatttc---cttatcatggttgtgcacgagatgtattacaaatcctacgtgcatc |
8726548 |
T |
|
| Q |
219 |
atgccaatcatgaagcataa-tttttcctctctcaacaacataaacttgagcatcaattacctc |
281 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
8726547 |
ttgccagtcatgaagcataacttttttttctctcaacaacacaaacatgaacatcaattacctc |
8726484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 9078631 - 9078371
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcat |
118 |
Q |
| |
|
|||||||| |||||| ||||| ||||||| ||| ||||| ||||||||||||||||||||| ||||| || | ||||| ||||||| ||||| ||| || |
|
|
| T |
9078631 |
ggagtaaaccattcattttttgccaaaacgaaagtgcatatatcatcccttatacaaactcatattcccattttattaaaaagttgaaagaaataagtat |
9078532 |
T |
|
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatc |
218 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| |||||||||||| ||| || ||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
9078531 |
caattttgcacttaaatcttccttcagctggtttgatctatttcacatttc---cttatcatggttgtgcacgagatgtattacaaatcctacgtgcatc |
9078435 |
T |
|
| Q |
219 |
atgccaatcatgaagcataa-tttttcctctctcaacaacataaacttgagcatcaattacctc |
281 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
9078434 |
ttgccagtcatgaagcataacttttttttctctcaacaacacaaacatgaacatcaattacctc |
9078371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 4136212 - 4136022
Alignment:
| Q |
48 |
aaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcatcaatattgcacttaaatcttccttcagtt |
147 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | ||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||| | |
|
|
| T |
4136212 |
aaaattgcatgtatcatcccttatacaaactcttatacccactctattagaaagctaggagaaagaaatatcaatattacacttaaatcttccttcagct |
4136113 |
T |
|
| Q |
148 |
ggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatcatgccaatcatgaagcataa |
238 |
Q |
| |
|
||||| |||||||||||||||||||||||| || | || ||||||| ||||||||||| ||| ||||| ||||||||||||| ||||| |
|
|
| T |
4136112 |
tgtttggtccatttcacatttccttcttgtcacggctgtggacaagatatattacaaatcttacgagcatcttgccaatcatgaaacataa |
4136022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 17237706 - 17237987
Alignment:
| Q |
22 |
gtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcatcaa |
121 |
Q |
| |
|
||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||| ||| |
|
|
| T |
17237706 |
gtaaaccattcagtttttgccaaaacaaaagtgtctgtatcatcccttatacaaactcatattcccactctattagaaagctaggagaaagaagcaacaa |
17237805 |
T |
|
| Q |
122 |
tattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatcatg |
221 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| || |
|
|
| T |
17237806 |
tattgcatttaaatcttccttcagctggtttgatccatttcacatttccttcttgtcgtggatgtgcacaagatgtattacaaatcctacgtgcatcttg |
17237905 |
T |
|
| Q |
222 |
ccaatcatgaagcataatttttcctctctcaacaacataaacttga--gcatcaattacctcattccaaaatctgttttttc |
301 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||| | || |||||||||||||||||||| | |||||| |||| |
|
|
| T |
17237906 |
tcaatcatgaagcataacttttgctctctcaacaacataaaatggatcgcatcaattacctcattccacactctgttgtttc |
17237987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 32296119 - 32296339
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcat |
118 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||| ||| |||||| |||||||||||| ||||| | |||||||||||| ||| |||||||||||| |
|
|
| T |
32296119 |
ggagtaaaccattcagtttttgccaaaataaaagtgc----ctcatccattatacaaactcctattccccctctattagaaaattgttagaaagaagcat |
32296214 |
T |
|
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatc |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| || ||||||||||||||||||| || |||| |||||| |
|
|
| T |
32296215 |
caatattgcacttaaatcttccttcagctggtttgatccatttcacattttcatcttgtcgcggctatgcacaagatgtattacgaaacctatgtgcatc |
32296314 |
T |
|
| Q |
219 |
atgccaatcatgaagcataattttt |
243 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
32296315 |
ttgccaatcatgaagcatagttttt |
32296339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 20174422 - 20174306
Alignment:
| Q |
41 |
ccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttg---ggagaaagaagcatcaatattgcacttaaatct |
137 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||| | || |||||||||||| | |||||||| ||| |||||||||||||||| | |
|
|
| T |
20174422 |
ccaaaacaaaagtgtatgtatcatcccttatacaaactcttattcccgctttattagaaagttactagaagaaagaaacattaatattgcacttaaattt |
20174323 |
T |
|
| Q |
138 |
tccttcagttggtttga |
154 |
Q |
| |
|
||||| ||||| ||||| |
|
|
| T |
20174322 |
tcctttagttgatttga |
20174306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 9e-92; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 5848998 - 5848708
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaa |
110 |
Q |
| |
|
||||||| |||||||| |||| | |||| |||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
5848998 |
cacagactggagtaaaccattatgcttttgtcaaaacaaaagtgcatgtatcatctcttatacaaactcctattcccactctattagaaagctgggagaa |
5848899 |
T |
|
| Q |
111 |
agaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatccta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
5848898 |
agaagcatcaatattgcacttaaatcttccttcagctagtttgatccatttcacatttccttcttgtcgcaaatgtgcacaagatgtattacaaatccta |
5848799 |
T |
|
| Q |
211 |
cttgcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattccaaaatctgttttttc |
301 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| ||||||| |||||||||||| ||||||||||||||||||| || | |||||| |||| |
|
|
| T |
5848798 |
tgtgcatcttgccaatcatgaagcataacttttgctctctcgacaacataaactggagcatcaattacctcatttcacactctgttgtttc |
5848708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 287
Target Start/End: Original strand, 18579771 - 18580046
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaa |
110 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
18579771 |
cacagactggagtaaaccattcagtttttgccaaaacaaaagtgcctgtatcatcccttatacaaactcctattcccactctattagaaagctgggagaa |
18579870 |
T |
|
| Q |
111 |
agaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtat-tacaaatcct |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||| | | || ||||||||||| ||| || ||| |
|
|
| T |
18579871 |
agaagcatcaatattgcatttaaatcttcctttcgctggtttgatccatttcacatttccttcttgtcgcgactgtgaacaagatgtatatacgaaacct |
18579970 |
T |
|
| Q |
210 |
acttgcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
|| |||||| ||||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
18579971 |
acgtgcatcttgccaatcatgaagcataactttt--gtgctccacaacataaacttgagtatcaattacctcactcca |
18580046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 15745813 - 15746084
Alignment:
| Q |
14 |
agaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaaga |
113 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| | | ||||||||| |||||||| |||| ||||| ||||||||||||||| |||||| | |
|
|
| T |
15745813 |
agactggagtaagccattcagtttttaccaaaacaaaagtacctgtatcatctcttatacagactcctattcccactctattagaaagcatagagaaaaa |
15745912 |
T |
|
| Q |
114 |
agcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctactt |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | ||||||||| ||||||| || ||||| | |
|
|
| T |
15745913 |
agcatcaatattgcacttaaatctcccttcaactggtttgatccatttcacatttccttcttgtcgcaactgtgcacaagaagtattacgaaacctacgt |
15746012 |
T |
|
| Q |
214 |
gcatcatgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattc |
285 |
Q |
| |
|
||||| |||||| |||||| |||| ||||| |||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
15746013 |
gcatcttgccaagcatgaaacatagtttttgctctctcaacaacataggctttaatatcaattacctcattc |
15746084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 33171159 - 33171424
Alignment:
| Q |
20 |
gagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcatc |
119 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || |||| |||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||| |
|
|
| T |
33171159 |
gagtaaaccattcagttttagccaaaacaaaagtgtatgt--catcccttatacaaactcctattaccactctattagaaagatgggagaaagaaacatc |
33171256 |
T |
|
| Q |
120 |
aatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatca |
219 |
Q |
| |
|
||||||| |||||||| || ||| |||||||||||| | ||||| || | | |||||||| ||||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
33171257 |
aatattgtacttaaatatttctttagttggtttgattcgtttcaaatattcgtcttgtcgcggttatgcacaagttgtattataaatcctatgagcatct |
33171356 |
T |
|
| Q |
220 |
tgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
|| ||| |||||| |||| ||||| |||||||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
33171357 |
tgtcaaccatgaaacatagtttttactctctcaacaacataaagttgagtatcaattaccccattcca |
33171424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 140 - 282
Target Start/End: Original strand, 40492515 - 40492657
Alignment:
| Q |
140 |
cttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatcatgccaatcatgaagcataat |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
40492515 |
cttcagctggtttgatccatttcacatttccttcttgtcacggatgtgcacaaggtgtattacaaatcctacgtgcatcttgccaatcattaagcataat |
40492614 |
T |
|
| Q |
240 |
ttttcctctctcaacaacataaacttgagcatcaattacctca |
282 |
Q |
| |
|
||| ||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
40492615 |
tttctctctctccacaacataaaatggagcatcaattacctca |
40492657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 141 - 285
Target Start/End: Complemental strand, 19051366 - 19051219
Alignment:
| Q |
141 |
ttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatcatgccaatcatgaagcataatt |
240 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||| ||||| || |||||||||||||||| | |
|
|
| T |
19051366 |
ttcagctggtttgatccatttcacatttccttcttgtcacgactgcgaacaagatgtattacaaatcctacgagcatcttgtcaatcatgaagcataact |
19051267 |
T |
|
| Q |
241 |
tttcctctctcaacaacata---aacttgagcatcaattacctcattc |
285 |
Q |
| |
|
||| |||||||||||||||| | | || |||||||||||||||||| |
|
|
| T |
19051266 |
tttgctctctcaacaacataatcagcatgcgcatcaattacctcattc |
19051219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 36098649 - 36098514
Alignment:
| Q |
30 |
ttcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcatcaatattgcac |
129 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| ||||| ||||||| ||||| |||||||||| | || ||||||| || ||| |||||||||| |
|
|
| T |
36098649 |
ttcaatttttaccaaaacaaaaatgtgtgtatcatctcttatgcaaactcctattccaactctattagtatattaggagaaaaaaacattaatattgcac |
36098550 |
T |
|
| Q |
130 |
ttaaatcttccttcagttggtttgatccatttcaca |
165 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||| |
|
|
| T |
36098549 |
ttaaatcatccttcacttggtttaatccatttcaca |
36098514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 120 - 287
Target Start/End: Complemental strand, 5509872 - 5509709
Alignment:
| Q |
120 |
aatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatca |
219 |
Q |
| |
|
||||||||| |||||||||| ||||| | |||| ||||||||||||||| ||||||||| ||| ||| |||||| ||||||||||| | ||| |
|
|
| T |
5509872 |
aatattgcatttaaatcttctttcagctagttttatccatttcacattttcttcttgtcagagttg----caatatgtatcacaaatcctacctatatct |
5509777 |
T |
|
| Q |
220 |
tgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
||||||| |||| |||| ||||| |||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
5509776 |
tgccaattctgaaacatagtttttgctctctcaacaacataaacttgagaatctattacctcattcca |
5509709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 19051436 - 19051364
Alignment:
| Q |
13 |
cagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattc |
85 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||||||||| || ||||| |||| |||||||||||| ||||| |
|
|
| T |
19051436 |
cagactggagtagatcattcagttttttccaaaacaaaattgtctgtattatcctttatacaaactcatattc |
19051364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 32862988 - 32863060
Alignment:
| Q |
23 |
taaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctatt |
95 |
Q |
| |
|
||||||||||||||||| |||||||||| || |||| |||| ||||||| |||||||||| |||||||| |
|
|
| T |
32862988 |
taaatcattcagtttttttcaaaacaaaagtgattgtagcatctattatacatactcttattccaactctatt |
32863060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 32922931 - 32922666
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcat |
118 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||| || ||||||| |||| |||||||||||||||| |
|
|
| T |
32922931 |
ggagtaaaccattcagtttttgccaaaacaaaagtgcctacatcatcccttatacaaactcttattcccagtctattataaagatgggagaaagaagcat |
32922832 |
T |
|
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatc |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||| ||| |||||| |
|
|
| T |
32922831 |
caatattgcacttaaatattccttcagttggtttgatccatttcacatttcctacttgtcgcggttgtgcacatgatgtattacaaatcttacatgcatc |
32922732 |
T |
|
| Q |
219 |
atgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcatt |
284 |
Q |
| |
|
| ||||||||||| |||| |||| ||||||| |||||||| |||| |||||||| ||||||||| |
|
|
| T |
32922731 |
ttaccaatcatgaaacatagattttactctctccacaacatatacttaagcatcaactacctcatt |
32922666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 44022042 - 44021807
Alignment:
| Q |
28 |
cattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcatcaatattgc |
127 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||| |||||||||||| ||||| |||| |||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
44022042 |
cattcagtttttgccaaaacaaaaatgtctgtatcatccattatacaaactcctattcccactttattagaaagctggaagaaagaagcatcaatattgc |
44021943 |
T |
|
| Q |
128 |
acttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatcatgccaatc |
227 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| ||||| | |||| |
|
|
| T |
44021942 |
acttaaatcttccttcagctggtttgatccatttcacatttccttcttgcagcggttgtgcacaagatgtattacaaatcctacgtgcat----ctaatc |
44021847 |
T |
|
| Q |
228 |
atgaagcataatttttcctctctcaacaacataaacttga |
267 |
Q |
| |
|
|||||||||| |||| ||||||| ||| |||||||||| |
|
|
| T |
44021846 |
gtgaagcataacttttgctctctcgacactataaacttga |
44021807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 43896292 - 43896034
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcat |
118 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| | |||||| ||||||||||||| ||| |||| ||| ||||||||||| ||||||||| || ||| |
|
|
| T |
43896292 |
ggagtaaattattcagtttttgtcaaaacaaaagtttatgtataatcccttatacaacctcatatttccaccctattagaaagctgggagaaaaaa-cat |
43896194 |
T |
|
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatc |
218 |
Q |
| |
|
|||||| |||||||||||| || |||| || |||||||||||| ||||||| ||||||||| || ||||||| |||||||||||| ||||||| |||||| |
|
|
| T |
43896193 |
caatatagcacttaaatctcccctcagctgctttgatccatttaacatttctttcttgtcgcggctatgcacgagatgtattacatatcctacatgcatc |
43896094 |
T |
|
| Q |
219 |
atgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattac |
278 |
Q |
| |
|
|| ||||||||||| || |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
43896093 |
ttgtcaatcatgaagtgtagcttttgtgctctcaacaacataaactttagcatcaattac |
43896034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 30939856 - 30940023
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaa |
110 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||| |
|
|
| T |
30939856 |
cacagacttgagtaaatcattcagtttttgccaaaacgaaagtgcatgtatcatcccttatacaaactcttattcccactttatttgaaagctgggagaa |
30939955 |
T |
|
| Q |
111 |
agaagcatcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtc |
178 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| || ||| || |||||||||||||||| |||| |
|
|
| T |
30939956 |
agaagtatcaatattgcacttaaatcttctttcagctgatttaatttatttcacatttccttcgtgtc |
30940023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 118 - 287
Target Start/End: Complemental strand, 42131842 - 42131676
Alignment:
| Q |
118 |
tcaatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcat |
217 |
Q |
| |
|
||||||||||||||||||| || || || |||||||||| |||||||||||||||||||||| |||| ||||||||||||||| |||| ||||| || |
|
|
| T |
42131842 |
tcaatattgcacttaaatcctcttttagctggtttgatctatttcacatttccttcttgtcgcggttgtgcacaagatgtattgcaaaacctacgtg--- |
42131746 |
T |
|
| Q |
218 |
catgccaatcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||| |||||||||| ||||| |||||||||||||||||| |
|
|
| T |
42131745 |
catgccaatcatgaagcatagtttttgctctctccacaacataaaattgagtatcaattacctcattcca |
42131676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 39220782 - 39220664
Alignment:
| Q |
23 |
taaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactctattagaaagttgggagaaagaagcatcaat |
122 |
Q |
| |
|
|||| ||||||||||| | ||||||||| |||||||||||||| |||| || |||| ||||| |||||||| | ||| ||| |||||||||||||| |
|
|
| T |
39220782 |
taaaccattcagttttcgctaaaacaaaagtgcatgtatcatccattatgcatactcctattccaactctattggtttgtttggaaaaagaagcatcaat |
39220683 |
T |
|
| Q |
123 |
attgcacttaaatcttcct |
141 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
39220682 |
attgcacttaaatcctcct |
39220664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 24428082 - 24428143
Alignment:
| Q |
226 |
tcatgaagcataatttttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||| |||||||| |||||||||||| |
|
|
| T |
24428082 |
tcatgaagcatagcttttattctctccacaacataaactttagcatcaactacctcattcca |
24428143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 42131887 - 42131846
Alignment:
| Q |
60 |
atcatcccttatacaaactcttattctcactctattagaaag |
101 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||||||| |
|
|
| T |
42131887 |
atcatcccttatacaaactcatgttcccactctattagaaag |
42131846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 15609890 - 15609745
Alignment:
| Q |
142 |
tcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatcctacttgcatcatgccaatcatgaagcataattt |
241 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| || |||||| ||||||||||||||||||| || |
|
|
| T |
15609890 |
tcagctggtttgatccatttcacatttccttcttgtcgcggttgtgcacaagatgtattaaaaatccaacgtgcatcttgccaatcatgaagcataactt |
15609791 |
T |
|
| Q |
242 |
ttcctctctcaacaacataaacttgagcatcaattacctcattcca |
287 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
15609790 |
ttactctctcgacaacataaacttgagcatcaactacctcattcca |
15609745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 15609966 - 15609892
Alignment:
| Q |
19 |
ggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttattctcactcta |
93 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
15609966 |
ggagtaaatcattcagtttttgccaaaacaaaagtgcatgtatcatcccttatacaaactcatattcccactcta |
15609892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 5827433 - 5827361
Alignment:
| Q |
12 |
acagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttatt |
84 |
Q |
| |
|
|||||| |||||||| |||||||||||| ||||||||||| || |||||||||||||||||| |||| |||| |
|
|
| T |
5827433 |
acagactggagtaaaccattcagtttttgccaaaacaaaagtgtctgtatcatcccttatacagactcctatt |
5827361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0913
Description:
Target: scaffold0913; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 3329 - 3238
Alignment:
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatccta |
210 |
Q |
| |
|
|||| |||||| ||||||||| || |||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||||| |
|
|
| T |
3329 |
caatcttgcacataaatcttcgtttagttggtttgatccatttcacatttccttcttgtcgcggctgcgtacaagatgtattacaaatccta |
3238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0913; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 3407 - 3334
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttatt |
84 |
Q |
| |
|
||||||| |||||||| |||| ||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
3407 |
cacagactggagtaaaccatttagtttttgccaaaacaaaagtgtatgtatcatcccttatacaaactcttatt |
3334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0898
Description:
Target: scaffold0898; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 2272 - 2363
Alignment:
| Q |
119 |
caatattgcacttaaatcttccttcagttggtttgatccatttcacatttccttcttgtcgtggttatgcacaagatgtattacaaatccta |
210 |
Q |
| |
|
|||| |||||| ||||||||| || |||||||||||||||||||||||||||||||||||| || | | |||||||||||||||||||||| |
|
|
| T |
2272 |
caatcttgcacataaatcttcgtttagttggtttgatccatttcacatttccttcttgtcgcggctgcgtacaagatgtattacaaatccta |
2363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0898; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 2194 - 2267
Alignment:
| Q |
11 |
cacagaccggagtaaatcattcagtttttaccaaaacaaaaatgcatgtatcatcccttatacaaactcttatt |
84 |
Q |
| |
|
||||||| |||||||| |||| ||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
2194 |
cacagactggagtaaaccatttagtttttgccaaaacaaaagtgtatgtatcatcccttatacaaactcttatt |
2267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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