View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2881_low_9 (Length: 332)

Name: NF2881_low_9
Description: NF2881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2881_low_9
NF2881_low_9
[»] chr4 (3 HSPs)
chr4 (100-330)||(30776132-30776362)
chr4 (17-82)||(30777299-30777364)
chr4 (17-82)||(30776727-30776792)
[»] chr2 (7 HSPs)
chr2 (144-330)||(16660967-16661153)
chr2 (242-305)||(12000373-12000436)
chr2 (181-303)||(43626362-43626484)
chr2 (169-317)||(12244329-12244477)
chr2 (184-302)||(7543320-7543438)
chr2 (168-230)||(16656525-16656587)
chr2 (280-318)||(16656637-16656675)
[»] chr7 (11 HSPs)
chr7 (181-320)||(3148396-3148535)
chr7 (176-320)||(8584469-8584613)
chr7 (172-320)||(8630253-8630401)
chr7 (169-318)||(8647728-8647877)
chr7 (154-318)||(7876745-7876909)
chr7 (169-318)||(1302338-1302487)
chr7 (184-318)||(8660271-8660405)
chr7 (181-318)||(6790437-6790574)
chr7 (184-318)||(8655376-8655510)
chr7 (181-318)||(10492939-10493076)
chr7 (169-301)||(13332076-13332208)
[»] chr5 (2 HSPs)
chr5 (163-299)||(42554107-42554243)
chr5 (181-318)||(28220974-28221111)
[»] chr1 (3 HSPs)
chr1 (168-318)||(4677465-4677615)
chr1 (184-318)||(15596086-15596220)
chr1 (141-215)||(34465148-34465220)
[»] chr8 (1 HSPs)
chr8 (181-306)||(43745863-43745985)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 100 - 330
Target Start/End: Complemental strand, 30776362 - 30776132
Alignment:
Q  100 gagttcctcctgagtgtgtgaggtgaaaacagaacttgacctttgaaagatcgcatggcgaacaaatgtgaaggacatgccgtgggaatagaccttggaa 199  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30776362 gagttcctcctgagtgtgtgaggtgaaaacagagcttgacctttgaaagatcgcatggcgaacaaatgtgaaggacatgccgtggggatagaccttggaa 30776263  T
Q  200 caacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgcttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30776262 caacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgcttt 30776163  T
Q  300 cactgatggtcaaaggttggtctgtgctgct 330  Q
    |||||||||||||||||||||| ||||||||    
T  30776162 cactgatggtcaaaggttggtcggtgctgct 30776132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 30777299 - 30777364
Alignment:
Q  17 gtttcatcacttgaaacgttacgtgaagataaaaggagcattttccttgtacaaataaaggagtta 82  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30777299 gtttcatcacttcaaacgttacgtgaagataaaaggagcattttccttgtacaaataaaggagtta 30777364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 30776792 - 30776727
Alignment:
Q  17 gtttcatcacttgaaacgttacgtgaagataaaaggagcattttccttgtacaaataaaggagtta 82  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30776792 gtttcatcacttcaaacgttaggtgaagataaaaggagcattttccttgtacaaataaaggagtta 30776727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 330
Target Start/End: Original strand, 16660967 - 16661153
Alignment:
Q  144 gaaagatcgcatggcgaacaaatgtgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacaga 243  Q
    |||||||| ||||||||  |||   ||||| ||||  ||||| |||||||| |||||||| ||||| ||||| ||||||||| |||| ||||||||||||    
T  16660967 gaaagatcacatggcgagaaaacacgaagggcatgttgtgggcatagacctaggaacaacatactcatgtgttgctgtttggttggaagagaaaaacaga 16661066  T
Q  244 gttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggtctgtgctgct 330  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||||||||| ||| ||||    
T  16661067 gttgagattatccacaacgatgaaggcaacaaaattacaccttcttttgttgcttttactgatgctcaaaggttggtcggtggtgct 16661153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 12000436 - 12000373
Alignment:
Q  242 gagttgaaattatccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactga 305  Q
    |||||||||| || ||||||||| |||||| |||||| |||||||||| |||||||||||||||    
T  12000436 gagttgaaatcattcacaacgatcaaggcaacaaaataacaccttcttgtgttgctttcactga 12000373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 43626484 - 43626362
Alignment:
Q  181 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 280  Q
    |||||||||||||||||||||||||| || ||| | ||||| ||||| || || || |  ||||| || ||||||||||| ||  |||| | || ||  |    
T  43626484 gtgggaatagaccttggaacaacgtattcttgtattgctgtgtggcttgatgaaaacagaagagtagagattatccacaatgaccaaggaaacagaacta 43626385  T
Q  281 caccttcttttgttgctttcact 303  Q
    |||||||||||||| ||||||||    
T  43626384 caccttcttttgtttctttcact 43626362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 317
Target Start/End: Original strand, 12244329 - 12244477
Alignment:
Q  169 gaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaag 268  Q
    ||||||| ||||||||||||||||||||| |||||||| || ||||| || || |||| |||  |  |     | |||||||| || ||||||||| | |    
T  12244329 gaaggacgtgccgtgggaatagaccttggtacaacgtattcatgtgttgcagtatggcaggaacaacactctcgtgttgaaatcattcacaacgatcagg 12244428  T
Q  269 gcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggtt 317  Q
    ||| || ||  |||||||||| ||||||||||||||| | |||||||||    
T  12244429 gcaacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtt 12244477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 302
Target Start/End: Complemental strand, 7543438 - 7543320
Alignment:
Q  184 ggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacac 283  Q
    |||||||||||||| ||||||||||| ||||| || || |||| |||  |  |  |  |||||||||| || ||||||||  |||||| || ||  ||||    
T  7543438 ggaatagaccttggcacaacgtactcttgtgttgcagtatggcaggatcaacactatcgagttgaaatcattcacaacgaccaaggcaacagaacaacac 7543339  T
Q  284 cttcttttgttgctttcac 302  Q
    |||||||||||||||||||    
T  7543338 cttcttttgttgctttcac 7543320  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 16656525 - 16656587
Alignment:
Q  168 tgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctgga 230  Q
    |||||||| ||| ||||||||||||||||||||||| || || ||||| ||||| ||| ||||    
T  16656525 tgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttgctgtgtggatgga 16656587  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 318
Target Start/End: Original strand, 16656637 - 16656675
Alignment:
Q  280 acaccttcttttgttgctttcactgatggtcaaaggttg 318  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  16656637 acaccttcttttgttgctttcactcatgatcaaaggttg 16656675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 320
Target Start/End: Complemental strand, 3148535 - 3148396
Alignment:
Q  181 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 280  Q
    |||||||| ||||||||||||||||| ||||| || ||||||||||| || ||| | ||||||||||| ||||| ||||| ||  |||||| ||||| ||    
T  3148535 gtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggctcgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaacca 3148436  T
Q  281 caccttcttttgttgctttcactgatggtcaaaggttggt 320  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  3148435 caccttcttttgttgctttcactgatgatcaaaggttggt 3148396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 176 - 320
Target Start/End: Original strand, 8584469 - 8584613
Alignment:
Q  176 atgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaa 275  Q
    |||| ||||||||||||||||||||||| || || ||||| | ||||||| |||| || || ||||||||||| ||||| ||||||||||||||||  ||    
T  8584469 atgctgtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagattattcacaacgatgaaggcaataa 8584568  T
Q  276 aatcacaccttcttttgttgctttcactgatggtcaaaggttggt 320  Q
    |||||||||||| ||||||||||| || |||| ||||||||||||    
T  8584569 aatcacaccttcctttgttgcttttaccgatgatcaaaggttggt 8584613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 172 - 320
Target Start/End: Complemental strand, 8630401 - 8630253
Alignment:
Q  172 ggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggca 271  Q
    |||||||| ||||||||||||||||||||||| || || ||||| | ||||||| |||| || || ||||||||||| ||||| ||||| ||||||||||    
T  8630401 ggacatgctgtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagattattcacaatgatgaaggca 8630302  T
Q  272 gcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttggt 320  Q
      |||||||||||||| || |||||||| || |||| ||||||||||||    
T  8630301 ataaaatcacaccttccttcgttgcttttaccgatgatcaaaggttggt 8630253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 318
Target Start/End: Complemental strand, 8647877 - 8647728
Alignment:
Q  169 gaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaag 268  Q
    ||||||| ||| |||||||||||||||||||||||||| |||||||| ||||| ||||| || ||  | || |||||||| ||||| ||||| ||| |||    
T  8647877 gaaggacttgcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcttgatgaacacaatagagttgagattattcacaatgatcaag 8647778  T
Q  269 gcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttg 318  Q
    | | || ||  ||||||||||||||||||||||| |||| ||||||||||    
T  8647777 gaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttg 8647728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 154 - 318
Target Start/End: Original strand, 7876745 - 7876909
Alignment:
Q  154 atggcgaacaaatgtgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaatta 253  Q
    |||||||| ||||  ||||||| ||| |||||||||||||||||||||||||| || ||||| ||||| ||||| || ||  | || ||||| |||||||    
T  7876745 atggcgaaaaaatacgaaggacgtgcggtgggaatagaccttggaacaacgtattcctgtgttgctgtgtggcttgatgaacacaatagagtcgaaatta 7876844  T
Q  254 tccacaacgatgaaggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttg 318  Q
    | ||||| ||  |||||| || ||  |||||||||||||||||||||||  ||| ||||||||||    
T  7876845 ttcacaatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttg 7876909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 318
Target Start/End: Complemental strand, 1302487 - 1302338
Alignment:
Q  169 gaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaag 268  Q
    ||||||| ||| || ||||||||||||||||| || || |||||||| ||||| ||||||||| |  | || ||||| || || ||| |||||||  |||    
T  1302487 gaaggacgtgctgttggaatagaccttggaactacttattcgtgtgttgctgtgtggctggagaatcacaatagagtagagatcatctacaacgaccaag 1302388  T
Q  269 gcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttg 318  Q
    ||| |||||  ||||| ||||||||||||||||| |||| ||||||||||    
T  1302387 gcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttg 1302338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 8660405 - 8660271
Alignment:
Q  184 ggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacac 283  Q
    |||||||||||||||||||| || |||||||| ||||| ||||||||| |  | ||  |||| || || ||| |||||||  |||| | |||||  ||||    
T  8660405 ggaatagaccttggaacaacctattcgtgtgttgctgtgtggctggagaatcacaatcgagtcgagatcatctacaacgaccaaggaaacaaaacaacac 8660306  T
Q  284 cttcttttgttgctttcactgatggtcaaaggttg 318  Q
    |||| ||||||||||||||||| | ||||||||||    
T  8660305 cttcatttgttgctttcactgacgatcaaaggttg 8660271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 6790574 - 6790437
Alignment:
Q  181 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 280  Q
    |||||||||||||| |||||||| || || ||||| | ||| ||||| || ||  | || |||||||| ||||| ||||| ||  |||| | ||||| ||    
T  6790574 gtgggaatagacctgggaacaacatattcttgtgttggtgtgtggcttgatgaacacaatagagttgagattattcacaatgaccaaggtaacaaaacca 6790475  T
Q  281 caccttcttttgttgctttcactgatggtcaaaggttg 318  Q
    |||||||||||||||||||||| ||||  |||||||||    
T  6790474 caccttcttttgttgctttcaccgatgaccaaaggttg 6790437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 8655510 - 8655376
Alignment:
Q  184 ggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacac 283  Q
    ||||||||||| |||||||| || || ||||| ||||| ||||| || ||  | || |||||||| ||||| ||||| ||| ||||||  | ||  ||||    
T  8655510 ggaatagacctcggaacaacctattcatgtgttgctgtgtggcttgacgatcacaatagagttgagattattcacaatgatcaaggcaatagaactacac 8655411  T
Q  284 cttcttttgttgctttcactgatggtcaaaggttg 318  Q
    ||||| |||||||||||||||||  ||||||||||    
T  8655410 cttctgttgttgctttcactgattatcaaaggttg 8655376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 318
Target Start/End: Original strand, 10492939 - 10493076
Alignment:
Q  181 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 280  Q
    ||||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||  |  | |||||||||||||| ||||| ||| |||| |  | ||  |    
T  10492939 gtgggaatagatcttggaacaacctactcatgtgttgctgtatggcttgatgaacaccaaagagttgaaattattcacaatgatcaaggaaatagaacta 10493038  T
Q  281 caccttcttttgttgctttcactgatggtcaaaggttg 318  Q
    |||||||||||||||||||||   ||| ||||||||||    
T  10493039 caccttcttttgttgctttcaacaatgatcaaaggttg 10493076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 13332076 - 13332208
Alignment:
Q  169 gaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaag 268  Q
    ||||||| ||| |||||||| |||||||||||||| ||||| ||||| ||||| ||||| || ||  |  | |||||||| ||||| ||||| ||| |||    
T  13332076 gaaggacgtgcagtgggaatcgaccttggaacaacctactcatgtgttgctgtgtggcttgatgaacaccaaagagttgagattattcacaatgatcaag 13332175  T
Q  269 gcagcaaaatcacaccttcttttgttgctttca 301  Q
    | |  | ||  ||||||||||||||||||||||    
T  13332176 gaaatagaactacaccttcttttgttgctttca 13332208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 42554107 - 42554243
Alignment:
Q  163 aaatgtgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacg 262  Q
    |||| |||||||| ||| |||||||||||||||||||||||||| ||||||||  |||| |||   || ||  |||| |||||||| ||||| ||||| |    
T  42554107 aaatatgaaggacgtgcagtgggaatagaccttggaacaacgtattcgtgtgttactgtgtgggaagatgaacaaaatagagttgagattattcacaatg 42554206  T
Q  263 atgaaggcagcaaaatcacaccttcttttgttgcttt 299  Q
    || |||||| |||||  ||||||||||||||||||||    
T  42554207 atcaaggcaacaaaacaacaccttcttttgttgcttt 42554243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 28221111 - 28220974
Alignment:
Q  181 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 280  Q
    ||||||||||| |||||||||||||| || ||||| ||||| ||||  || ||  | || || ||||| ||||| ||||| ||| |||||| |||||  |    
T  28221111 gtgggaatagatcttggaacaacgtattcatgtgttgctgtgtggcaagatgaacacaatagggttgagattattcacaatgatcaaggcaacaaaacaa 28221012  T
Q  281 caccttcttttgttgctttcactgatggtcaaaggttg 318  Q
    | |||||||||||||||||||| |||| | ||||||||    
T  28221011 ctccttcttttgttgctttcaccgatgatgaaaggttg 28220974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 318
Target Start/End: Original strand, 4677465 - 4677615
Alignment:
Q  168 tgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaa 267  Q
    |||||||| ||| ||||||||||| |||||||| || || || ||||| ||||| ||||||||| |  | |||||||| || |||||  |||| ||  ||    
T  4677465 tgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaatgaacaa 4677564  T
Q  268 ggcagcaaaatcacaccttcttttgttgctttcactgatggtcaaaggttg 318  Q
    |||| |||||  |||||||||||||||||||| ||||||| ||||||||||    
T  4677565 ggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttg 4677615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 15596220 - 15596086
Alignment:
Q  184 ggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatcacac 283  Q
    ||||||||||||||||||||||| || ||||| ||||| ||||| || ||  | || ||||| || ||||||||||| ||  |||| | || ||| ||||    
T  15596220 ggaatagaccttggaacaacgtattcttgtgttgctgtgtggcttgatgaacagaatagagtcgagattatccacaatgaccaaggaaacagaattacac 15596121  T
Q  284 cttcttttgttgctttcactgatggtcaaaggttg 318  Q
    ||||||||||| |||||||| ||| ||||||||||    
T  15596120 cttcttttgtttctttcactaatgatcaaaggttg 15596086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 34465148 - 34465220
Alignment:
Q  141 tttgaaagatcgcatggcgaacaaatgtgaaggacatgccgtgggaatagaccttggaacaacgtactcgtgtgt 215  Q
    |||||||||||  |||||||| ||||||||||||| ||| ||||||||||||||||| ||||| ||||| |||||    
T  34465148 tttgaaagatc--atggcgaaaaaatgtgaaggacgtgctgtgggaatagaccttggcacaacctactcatgtgt 34465220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 306
Target Start/End: Complemental strand, 43745985 - 43745863
Alignment:
Q  181 gtgggaatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 280  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||  || ||  |||| |||||||| ||||| ||||| ||| |||||| ||||   |    
T  43745985 gtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcaagatgaacaaaatagagttgagattattcacaatgatcaaggcaacaaa---a 43745889  T
Q  281 caccttcttttgttgctttcactgat 306  Q
    || |||||||||||||||| ||||||    
T  43745888 caacttcttttgttgcttttactgat 43745863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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