View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2882_high_2 (Length: 327)
Name: NF2882_high_2
Description: NF2882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2882_high_2 |
 | |
|
| [»] scaffold0440 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 39 - 309
Target Start/End: Complemental strand, 13596767 - 13596497
Alignment:
| Q |
39 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcatcttgaaatagaaaaaagcaatctcctcgatacagtctttcgacaaatcacat |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13596767 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcagctagaaatagaaaaaaacaatctcctcgatacagtctttcgacaaatcacat |
13596668 |
T |
|
| Q |
139 |
atgttttaaccgttgatactgatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
238 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13596667 |
atgttttaactgctgatactcatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
13596568 |
T |
|
| Q |
239 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgttaccgaaatgtatactcgatcaacac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13596567 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgttaccgaaaagtatactcgatcaacac |
13596497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 40 - 284
Target Start/End: Complemental strand, 22917242 - 22916996
Alignment:
| Q |
40 |
taaccaagagacacttacaaaagttgataatatt-cccttgatctcatcttgaaatagaaaaaa-gcaatctcctcgatacagtctttcgacaaatcaca |
137 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||| |||||||| |||||| || | ||||||| |||||| |||||||| |
|
|
| T |
22917242 |
taaccaagaaacacttacaaaagttgatattatttcccttgatctcagcttgaaaaagaaaaaaagcaatcgccccaatacagtgtttcgagaaatcaca |
22917143 |
T |
|
| Q |
138 |
tatgttttaaccgttgatactgatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatca |
237 |
Q |
| |
|
||||||||||| | | ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22917142 |
tatgttttaactgctcatattcatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactctagtaattattcaacaatca |
22917043 |
T |
|
| Q |
238 |
tataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22917042 |
tataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
22916996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 39 - 309
Target Start/End: Complemental strand, 29693237 - 29692984
Alignment:
| Q |
39 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcatcttgaaatagaaaaaagcaatctcctcgatacagtctttcgacaaatcacat |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29693237 |
ttaaccaagagacacttacaaaagttgataatattcccttcatctcagcttgaaatagaaaaaagcaat-----------------tcgacaaatcacat |
29693155 |
T |
|
| Q |
139 |
atgttttaaccgttgatactgatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
238 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29693154 |
atgttttaactgctgatactcatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
29693055 |
T |
|
| Q |
239 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgttaccgaaatgtatactcgatcaacac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29693054 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgttaccgaaatgtatactcgatcaacac |
29692984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 39 - 284
Target Start/End: Complemental strand, 22721029 - 22720784
Alignment:
| Q |
39 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcatcttgaaatagaaaaaagcaatctcctcgatacagtctttcgacaaatcacat |
138 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||||||| || || ||||||| ||||||| |||||| || | ||||| | |||||||||||||||| |
|
|
| T |
22721029 |
ttaaccaagaaacacttacaaaagttgatatttttcccttggtcccagcttgaaaaagaaaaatgcaatcaccccaatacaatgtttcgacaaatcacat |
22720930 |
T |
|
| Q |
139 |
atgttttaaccgttgatactgatatatcaaatatttagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcat |
238 |
Q |
| |
|
|||||||||| | | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22720929 |
atgttttaactgctcatactcatatatcaaatatttagactatcaaactataattaaggtttgaataaatagaaaactccagtaattattcaacaatcat |
22720830 |
T |
|
| Q |
239 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22720829 |
ataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
22720784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 187 - 284
Target Start/End: Complemental strand, 25730854 - 25730756
Alignment:
| Q |
187 |
tataattagggtttgaataaatagaaaactccagtaa-ttattcaacaatcatataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25730854 |
tataattagggtttgaataaatagaaaactctagtaaattattcaacaatcatataaccttagatataaattgagttgatgatttcaagttcgcatgtt |
25730756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 25730978 - 25730852
Alignment:
| Q |
39 |
ttaaccaagagacacttacaaaagttgataatattcccttgatctcatcttgaaatagaaaaaagcaatctcctcgatacagtctttcgacaaatcacat |
138 |
Q |
| |
|
|||||||||| |||||||||||| |||||| |||||||||||||||| ||||||| |||||||||||||| || | ||||||| |||||||||||||||| |
|
|
| T |
25730978 |
ttaaccaagaaacacttacaaaaattgatattattcccttgatctcagcttgaaaaagaaaaaagcaatcgccccaatacagtgtttcgacaaatcacat |
25730879 |
T |
|
| Q |
139 |
atgttttaaccgttgatactgatatat |
165 |
Q |
| |
|
||| |||||| | | ||||| |||||| |
|
|
| T |
25730878 |
atggtttaactgctcatactcatatat |
25730852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 281
Target Start/End: Complemental strand, 6490465 - 6490359
Alignment:
| Q |
173 |
ttagactatcaaactataattagggtttgaataaatagaaaactccagtaattattcaacaatcatataaccttagatataaattgagttgatgatttca |
272 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||| || |||||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
6490465 |
ttagactatcaaactataattagggttttaataaatagaaaacttcagtagttgttcaacaatc--ttaacctttgatataaattgagttgatgatttca |
6490368 |
T |
|
| Q |
273 |
agttcgcat |
281 |
Q |
| |
|
|||| |||| |
|
|
| T |
6490367 |
agtttgcat |
6490359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0440 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 8606 - 8658
Alignment:
| Q |
123 |
tttcgacaaatcacatatgttttaaccgttgatactgatatatcaaatattta |
175 |
Q |
| |
|
|||||||||||||||||||||||||| | | | ||| |||||||||||||||| |
|
|
| T |
8606 |
tttcgacaaatcacatatgttttaactgctcacactcatatatcaaatattta |
8658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University