View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2882_low_1 (Length: 962)
Name: NF2882_low_1
Description: NF2882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2882_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 213 - 603
Target Start/End: Complemental strand, 2423331 - 2422941
Alignment:
| Q |
213 |
tagaagtttgtgaagtaaagaaaagcatgcatggttgattgaaaggtataaagaaaagacaaactattaattacgtaaatggttgcttgatataatatga |
312 |
Q |
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| T |
2423331 |
tagaagtttgtgaagtaaagaaaagcatgcatggttgattgaaaggtataaagaaaagacaaactattaattacgtaaatggttgcttgatataatatta |
2423232 |
T |
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| Q |
313 |
taaaagagcacgcaaaagtgctacttgcgaacatagttaggattgtataaagccaccattttaattagtagtattgttttctggattaatgttttgtgta |
412 |
Q |
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| T |
2423231 |
tcaaagagcacgcaaaagtgctacttgcgaacatagttaggattgtataaagccaccattttaattagtagtattgttttctggattaatgttttgtgta |
2423132 |
T |
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| Q |
413 |
gtgccaacagcccactattttttgctttagtcgcaagataagtgccttcccatcccatatctcccatcttgtatatatctattttcattcacatgtttta |
512 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2423131 |
gtgcaaatagcccactattttttgctttagtcgcaagataagtgccttcccatcccatatctcccatcttgtatatatctattttcattcacatgtttta |
2423032 |
T |
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| Q |
513 |
tatggtggttatatatcaagagtaaaaaggtatttaaaatacatgagatttccatatatcaattaatatatatttttggatgatatgtttc |
603 |
Q |
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| T |
2423031 |
tatggtggttatatatcaagagtaaaaaggtatttaaaatacatgagatttccatatatcaattaatatatatttttggatgatatgtttc |
2422941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 643 - 933
Target Start/End: Complemental strand, 2422897 - 2422609
Alignment:
| Q |
643 |
tagtgtaaaacttttatacattgtcaatcaatcataattttgtagtcattaaaaacagttaaatttaattatattaagttacacatataaatgattgtga |
742 |
Q |
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| T |
2422897 |
tagtgtaaaacttttatacattctcaatcaatcataattttgtagtcattaaaaacaattaaatttaattatattaagttacacatataaatgattgtga |
2422798 |
T |
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| Q |
743 |
ttagttggccgtgtaaaacattttgcattggtagtgtattaaaattaannnnnnnnaaagatcacttagttatatgaaaaataaaataacaagagttaat |
842 |
Q |
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| T |
2422797 |
ttagttggccgtgtaaaacattttgcattggtagtgtattaaaattaattttttttaaagaacacttagttatatgaaaaataaaataacaagagttaat |
2422698 |
T |
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| Q |
843 |
tgacatatatatgcacttccacaccacctagtaaacttgtctattcattactcaaaccgatataccagtaaaaataaacccaatcactttt |
933 |
Q |
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| T |
2422697 |
tgac--atatatgcacttccacaccacctagtaaacttgtctattcattactcaaaccgatataccagtaaaaataaacccaatcactttt |
2422609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 2423560 - 2423354
Alignment:
| Q |
10 |
gacatcatcaagtcattgtatgacatcaaaagttaatgttgtttcataaaagtgtagaccttgaattattttcaaatgatttttatcattgatttgaggt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2423560 |
gacatcatcaagtcattgtatgacatcaaaagttaatgttgtttcataaaagtgtaaaccttgaattattttcaaatgatttttatcattgatttgaggt |
2423461 |
T |
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| Q |
110 |
tgaacctatcaaaaactacatcacatcacacaattactatcttaaatcgaaatccttcccaccattcatgtcaacttgagttggggtactgtgtatgtgt |
209 |
Q |
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| T |
2423460 |
tgaacctatcaaaaactacatcacatcacacaattactatcttaaatcgaaatccttcccaccattcatgtcaacttgagttggggtactgtgtatgtgt |
2423361 |
T |
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| Q |
210 |
tagtaga |
216 |
Q |
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||||||| |
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| T |
2423360 |
tagtaga |
2423354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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