View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2882_low_3 (Length: 205)
Name: NF2882_low_3
Description: NF2882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2882_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 38370452 - 38370267
Alignment:
| Q |
17 |
aacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttgaaatc------acgtgcaatgccacttttgaaatatccttttt |
110 |
Q |
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| T |
38370452 |
aacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttgaaatcgaaatcacgtgcaatgccacttttgaaatatccttttt |
38370353 |
T |
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| Q |
111 |
tctatctatatgctatatccagagtgttatcctcatataacggtgcctattggtaatcaatattgctcttggtcgtctgtgctcct |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
38370352 |
tctatctatatgctatatccagagtgttatcctcatataacggtgcctattggtaatcaatattgctcttggtcgtgtgtgttcct |
38370267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 38363985 - 38363804
Alignment:
| Q |
17 |
aacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttga------aatcacgtgcaatgccacttttgaaatatccttttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38363985 |
aacaagaatgggcatggccagtgtgtacaattccaaatgttgtggatatgtcacttgaaatcgaaatcacgtgcaatgccacttttgaaatatcctttta |
38363886 |
T |
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| Q |
111 |
tctatct---------atatgctatatccagagtgttatcctcatataacggtgcctattggtaatcaatattgctcttggt |
183 |
Q |
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| T |
38363885 |
tatatctatatctatcatatgctatatccagagtgttatcctcatataatggtgcctattggtaatcaatattcctcttggt |
38363804 |
T |
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