View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2883_low_1 (Length: 636)
Name: NF2883_low_1
Description: NF2883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2883_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 9 - 618
Target Start/End: Complemental strand, 39777493 - 39776895
Alignment:
| Q |
9 |
acatcatcaacagcatcactagattctgaaatgagcttccttatgtatccacttttggaaattaatggaaactgcaaattacgttagagttatgaaaaat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39777493 |
acatcatcaacagcatcactagattctgaaatgagcttccttatgtatccactttttgaaattaatggaaactgcaaattacgttagagttatgaaaaat |
39777394 |
T |
|
| Q |
109 |
aattcaataaacagcttaaagtactatgtctatacatatatcacttatattttcctattactattcttgatnnnnnnnnnnnnnnnnnnntactaagaat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39777393 |
aattcaataaacagcttaaagtactatgtctatacatatatcacttatattttcctattactattcttgataaaaaaagaaaaaagaaaatactaagaat |
39777294 |
T |
|
| Q |
209 |
tgcatgaacaaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaaaacagaacca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39777293 |
tgcatgaacaaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcataaaaaaagcaaagaattgattgaaaaaacagaacca |
39777194 |
T |
|
| Q |
309 |
agtactagaattcattactctccatttaatgatcctatgattagtaagtttgatgtttgagtttgttgactaccttgtgtaacgaataggaagcttcgcc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39777193 |
agtactagaattcattactctccatttagt-----------tagtaagtttgatatttgagtttgttgactaccttgtgtaacgaataggaagcttcgcc |
39777105 |
T |
|
| Q |
409 |
aatttgaatagcgacatcacttggaatctcctgggagtaattcctgtgataagtggttcaattcaaaggctttcagtaattttcatcatatccaagaaaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39777104 |
aatttgaatagcgacatcacttggaatctcctgggagtaattcctgtgataagtggttcaattcaaaggctttcagtaattttcatcatatccaagaaaa |
39777005 |
T |
|
| Q |
509 |
agttaatattagcatcggcaaatgcatgttataagagttttagaaaaccagaagcataccattcacttgttctcttcatggcactaggaatggctcctcc |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39777004 |
agttaatattagcatcggcaaatgcatgttataagagttttagaaaaccagaagcataccattcacttgttctcttcatggcactaggaatggctcctcc |
39776905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 1381263 - 1381228
Alignment:
| Q |
237 |
ctaaatagatcaaacgacatcataatgttgtatcat |
272 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1381263 |
ctaaatagatcaaacgacatcataatgttatatcat |
1381228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 9e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 218 - 414
Target Start/End: Original strand, 47798862 - 47799058
Alignment:
| Q |
218 |
aaccaatatgcggagtcaactaaatagatcaaacgacatcataatgttgtatcatnnnnnnngcaaagaattgattgaaaaaacagaaccaagtactaga |
317 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||| ||||||||||||| ||||| | ||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
47798862 |
aacctatatgtggagtcaactacatagatcaaaccacatcataatgttctatcaacaaaggtggaaataattgattgaaaaaacattaccaaggactaga |
47798961 |
T |
|
| Q |
318 |
attcattactctccatttaatgatcctatgattagtaagtttgatgtttgagtttgttgactaccttgtgtaacgaataggaagcttcgccaatttg |
414 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47798962 |
aatcattactctccatttaatgatattatgattagtaattttgatatttgaatttgttccctaccttgtgtaacgaataggaagcttcaccaatttg |
47799058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 47798650 - 47798759
Alignment:
| Q |
9 |
acatcatcaacagcatcactagattctgaaatgagcttccttatgtatccacttttggaaattaatggaaactgcaaattacgttagagttatgaaaaat |
108 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47798650 |
acatcagcaacagcattactagattctgaaatgagcttccttatgtgtccacttttggaaattaatggaaactgcaaattacattagagttatgaaaaat |
47798749 |
T |
|
| Q |
109 |
aattcaataa |
118 |
Q |
| |
|
|||||||||| |
|
|
| T |
47798750 |
aattcaataa |
47798759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University