View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2883_low_2 (Length: 328)
Name: NF2883_low_2
Description: NF2883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2883_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 244
Target Start/End: Complemental strand, 8696978 - 8696751
Alignment:
| Q |
2 |
ccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatc |
101 |
Q |
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| T |
8696978 |
ccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatc |
8696879 |
T |
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| Q |
102 |
ccatcaaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatcatggtaatataatgcatgcttaattagcacaataacaccg |
201 |
Q |
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| T |
8696878 |
ccatcaaggtgggcaatctttcttatggatctaatgaatatctattatatattctacat---------------catgcttaattagcacaataacaccg |
8696794 |
T |
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| Q |
202 |
atgctaatatcagatttttgaccgactaactcttattaatttt |
244 |
Q |
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| T |
8696793 |
atgctaatatcagatttttgaccgactaactcttattaatttt |
8696751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 8677702 - 8677916
Alignment:
| Q |
2 |
ccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtattaataatttcttggtatc |
101 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | ||||| |
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| T |
8677702 |
ccaacaatattacttcatacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaatttactccaaatcagtataaatagtttcctcgtatc |
8677801 |
T |
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| Q |
102 |
ccatcaaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatcatggtaat-------ataatgcatgcttaattagcacaat |
194 |
Q |
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| T |
8677802 |
tcatcaaggtggacaatctttaatatggatctaatgattatctattat--attctacatcatggtactataatgcataatgcatgcttaattaacacaat |
8677899 |
T |
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| Q |
195 |
aacaccgatgctaatat |
211 |
Q |
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| T |
8677900 |
aacgcggatgctaatat |
8677916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 8696724 - 8696666
Alignment:
| Q |
246 |
tcttcttgcttagcgcaactcattgcacgtaataatggactttaataaacgcaacatgg |
304 |
Q |
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| T |
8696724 |
tcttcttgcttagcgcaactcattgcacgtaataatggacttcaataaaagcaacatgg |
8696666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 8673612 - 8673655
Alignment:
| Q |
6 |
caatattacttcacacaccacttcactcaaataagaaaaacaag |
49 |
Q |
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| T |
8673612 |
caatattacttcacacaccacttcactcaaataaggaaaacaag |
8673655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 8692325 - 8692377
Alignment:
| Q |
4 |
aacaatattacttcacacaccacttcactcaaataagaaaaacaagcttctta |
56 |
Q |
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| T |
8692325 |
aacaatattacttcacacaccatttcactcaattaacgcaaacaagcttctta |
8692377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 275
Target Start/End: Original strand, 8678314 - 8678347
Alignment:
| Q |
242 |
tttctcttcttgcttagcgcaactcattgcacgt |
275 |
Q |
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| T |
8678314 |
tttctgttcttgcttagcgcaactcattgcacgt |
8678347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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