View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2884_high_4 (Length: 417)
Name: NF2884_high_4
Description: NF2884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2884_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 31537495 - 31537883
Alignment:
| Q |
1 |
cagaaggtaaataaaggttaccttctgcctctaattctagatagaccaagatattgtcagaatttttaatgatttacactcaagtataaaatcattcttt |
100 |
Q |
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| T |
31537495 |
cagaaggtaaataaaggttaccttctgcctctaattctacatataccaagatattgtcagaatttttaatgatttacactcaagtataaaatcattcttt |
31537594 |
T |
|
| Q |
101 |
ctaatagagagatagaatattcaccttataaacaagtctaaccaagcttattattgtcagtactccagagcagtaggtttgattcaacctatatgctctg |
200 |
Q |
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| T |
31537595 |
ctaatagagagatagaatattcaccttataa----------ccaagcttattattgtcaatactccagagcagtaggtttgattcaacctatatgctctg |
31537684 |
T |
|
| Q |
201 |
taaaaataaaacataaataacacaacaaactgtcgggttcgattatagcataacaatacaccagagcagcagtacatcaacaacttaacattagaatacg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
31537685 |
caaaaataaaacataaacaacacaacaaactgtcgggttcgattatagcataacaatacaccagaacagcagtacatcaacaacttaacattagaatatg |
31537784 |
T |
|
| Q |
301 |
caactaaattacatcagaattcagaacagagggatttacaacttaaacaacaacacaactgttatacctttaaccattacccaagcacaacagatgatc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31537785 |
caactaaattacatcagaattcagaacagagggatttacaacttaaacaacagcacaactgttatacctttaaccattacccaagcacaacggatgatc |
31537883 |
T |
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