View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2884_low_10 (Length: 244)
Name: NF2884_low_10
Description: NF2884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2884_low_10 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0028 (2 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 20423038 - 20423264
Alignment:
| Q |
18 |
caaactaaatctgctattctcaaggttctgtgtatactgaagaaagagggctatctactaggatgaccaaggttcatcaataaatttgaagtttcactgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20423038 |
caaactaaatctgctattctcaaggttctgtgtatactgaagaaagagggctatctactaggatgaccaaggttcatcaataaatttgaagtttcactgt |
20423137 |
T |
|
| Q |
118 |
tgtttaatagtacctgtgaattttatttaatttggtcgctttgcatatccttgcaggtacagggagatatgtgacgatatcatttttgctaacaatgtca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20423138 |
tgtttaatagtacctgtgaattttatttaatttggtcgctttgcatatccttgcaggtacagggagatatgtgacgatatcatttttgctaacaatgtcg |
20423237 |
T |
|
| Q |
218 |
actcacttctcaggttagttagttaat |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
20423238 |
actcacttctcaggttagttagttaat |
20423264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 127 - 244
Target Start/End: Complemental strand, 19231 - 19114
Alignment:
| Q |
127 |
gtacctgtgaattttatttaatttggtcgctttgcatatccttgcaggtacagggagatatgtgacgatatcatttttgctaacaatgtcaactcacttc |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||| |||||| ||||| ||||||||| |
|
|
| T |
19231 |
gtacctgtgaattttatttaatttggttgctttgcatatccttgcaggtacaacgagatatttgacgacatcattttggctaacgatgtcgactcacttc |
19132 |
T |
|
| Q |
227 |
tcaggttagttagttaat |
244 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19131 |
tcaggttagttagttaat |
19114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 19401 - 19307
Alignment:
| Q |
33 |
attctcaaggttctgtgtatactgaagaaagagggctatctactaggatgaccaaggttcatcaataaatttgaagtttcactgttgtttaatag |
127 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
19401 |
attctcaaggttctgtgtatactaaagaaagagggctatctactaggatgaccaaggttcatcaataaatttgcagtttcattgttgtttaatag |
19307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 22068807 - 22068701
Alignment:
| Q |
138 |
ttttatttaatttggtcgctttgcatatccttgcaggtacagggagatatgtgacgatatcatttttgctaacaatgtcaactcacttctcaggttagtt |
237 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||| |||||| |||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
22068807 |
ttttatttaatttggttgctttgcatatccttgcaggtacagcaagatatttgacgacatcattttggctaatgatgtcgactcacttctcaggttagtt |
22068708 |
T |
|
| Q |
238 |
agttaat |
244 |
Q |
| |
|
||||||| |
|
|
| T |
22068707 |
agttaat |
22068701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 39094387 - 39094459
Alignment:
| Q |
33 |
attctcaaggttctgtgtatactgaagaaagagggctatctactaggatgaccaaggttcatcaataaatttg |
105 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
39094387 |
attctcgaggttctgtggatactgaagaaagagggctatcttctaggatgactaaggttcattaataaatttg |
39094459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 243
Target Start/End: Complemental strand, 4651877 - 4651764
Alignment:
| Q |
129 |
acctgtgaattttatttaatttggtcgctttgcatatccttgcaggtacagggagatatgtgacgatatcatttttgctaacaatgtcaactcacttctc |
228 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||| ||| | |||||||| |||||||||||| ||||||||||| |
|
|
| T |
4651877 |
acctgtgaatttgatttaatttggtcgctttgcatatcctt-caggtacaacgagatattcgacaacatcattttggctaacaatgtcgactcacttctc |
4651779 |
T |
|
| Q |
229 |
aggttagttagttaa |
243 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4651778 |
aggttagttagttaa |
4651764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 4652000 - 4651953
Alignment:
| Q |
80 |
atgaccaaggttcatcaataaatttgaagtttcactgttgtttaatag |
127 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4652000 |
atgaccaaggttcatcaataaatttgcagtttcactgttgtttaatag |
4651953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University