View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2884_low_3 (Length: 472)
Name: NF2884_low_3
Description: NF2884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2884_low_3 |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 209 - 450
Target Start/End: Complemental strand, 31769546 - 31769305
Alignment:
| Q |
209 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31769546 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
31769447 |
T |
|
| Q |
309 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatgagcaccaaaaagaagctgtccaatgtgaaggtgagcaagatatg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31769446 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatgagcaccaaaaagaagctgtccaatgtgaaggtgagcaagatatg |
31769347 |
T |
|
| Q |
409 |
acaccaatattaataattttggaagggcactagacaggacac |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31769346 |
acaccaatattaataattttggaagggcactagacaggacac |
31769305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 5 - 200
Target Start/End: Complemental strand, 31769727 - 31769532
Alignment:
| Q |
5 |
ctgcttatgccaaactagttctctagttgcatctattgttgaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaata |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31769727 |
ctgcttatgccaaactagttctctagttgcatctattgttgaggaaatcggagctgtcagaatctgataagtgcctcgcacagtgtaaccatcatgaata |
31769628 |
T |
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| Q |
105 |
tctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat |
200 |
Q |
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| T |
31769627 |
tctggatcccattaccgcctgtcaataatattagcctgcacagaaacatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat |
31769532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 22237 - 22351
Alignment:
| Q |
59 |
tgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatca |
158 |
Q |
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||||||||||||||| | |||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||| |
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| T |
22237 |
tgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatcccactgccacctgtcaataatattagcctgcacaataacaccatca |
22336 |
T |
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| Q |
159 |
agtaattgcctacac |
173 |
Q |
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| T |
22337 |
agtaattgcctacac |
22351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 40484298 - 40484412
Alignment:
| Q |
59 |
tgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatca |
158 |
Q |
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||||||||||||||| | |||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||| |
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| T |
40484298 |
tgtcagaatctgatatgcacctcggacagtgtaaccttcatgaatatctggatcccactgccacctgtcaataatattagcctgcacaataacaccatca |
40484397 |
T |
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| Q |
159 |
agtaattgcctacac |
173 |
Q |
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||||||||||||||| |
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| T |
40484398 |
agtaattgcctacac |
40484412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 9690589 - 9690672
Alignment:
| Q |
90 |
taaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattgcctacac |
173 |
Q |
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|||||||||||| |||| |||||||| |||||||||||| || ||||| ||||||| |||| ||||||||| |||||||| |
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| T |
9690589 |
taaccatcatgagtatccggatctcactgccacctgtcagaaacattagtctgcacacaaacagtatcaagtaaaagcctacac |
9690672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 173
Target Start/End: Original strand, 31706866 - 31706981
Alignment:
| Q |
59 |
tgtcagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgcc-acctgtcaataatattagcctgcacaggaacatcatc |
157 |
Q |
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||||||||||||||| | ||| |||| |||| |||||||| || |||||||| || |||| || ||||||||||||||||||||||| |||| |||| |
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| T |
31706866 |
tgtcagaatctgataggcacctcacacaatgtacccatcatgcatgtctggatcccactgcccacatgtcaataatattagcctgcacaataacaccatc |
31706965 |
T |
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| Q |
158 |
aagtaattgcctacac |
173 |
Q |
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| T |
31706966 |
aagtaattgcatacac |
31706981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 32185855 - 32185905
Alignment:
| Q |
96 |
tcatgaatatctggatctcattgccacctgtcaataatattagcctgcaca |
146 |
Q |
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|||||||| | |||||| || ||||||||||||| |||||||||||||||| |
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| T |
32185855 |
tcatgaatgtttggatcccactgccacctgtcaagaatattagcctgcaca |
32185905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 42259357 - 42259529
Alignment:
| Q |
1 |
gaacctgcttatgccaaactagttctctagttgcatctattgttgaggaaactgaagctgtcagaatctgataagtgtctcgcacagtgtaaccatcatg |
100 |
Q |
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|||||||||||||||||| || |||||| |||| || | || || || || | || ||||| ||| ||||||| |||||||||| || || ||||| |
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| T |
42259357 |
gaacctgcttatgccaaatgagatctctaattgcgtcaaaagtggaagagaccggagttgtcataatgtgataagaacctcgcacagtatatccctcatg |
42259456 |
T |
|
| Q |
101 |
aatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagtaattgcctacac |
173 |
Q |
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|| ||||||| || ||||||||||||| |||||||||||||||| ||| |||||||||| |||||||| |
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| T |
42259457 |
tatgtctggatgccactgccacctgtcaagaatattagcctgcacaaatacactatcaagtaatagcctacac |
42259529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 40167369 - 40167258
Alignment:
| Q |
62 |
cagaatctgataagtgtctcgcacagtgtaaccatcatgaatatctggatctcattgccacctgtcaataatattagcctgcacaggaacatcatcaagt |
161 |
Q |
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||||||| |||||| ||||||| || || |||||||| || |||||||| || |||||||||||| |||||||||||||||| ||| |||||| | |
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| T |
40167369 |
cagaatccgataagcacctcgcactgtatacccatcatgtatgtctggatcccacagccacctgtcaagaatattagcctgcacaaatacaccatcaaat |
40167270 |
T |
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| Q |
162 |
aattgcctacac |
173 |
Q |
| |
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||| |||||||| |
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|
| T |
40167269 |
aatagcctacac |
40167258 |
T |
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