View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2884_low_5 (Length: 400)
Name: NF2884_low_5
Description: NF2884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2884_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 6 - 395
Target Start/End: Original strand, 47946388 - 47946777
Alignment:
| Q |
6 |
attattatagtattattttggcatgcttatttacttaactgtatgaggtagtgggtgccacataaacaaaagaaaatgatgaatgatttaacaagaaatt |
105 |
Q |
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| T |
47946388 |
attattatagtattattttggcatgcttatttacttaactgtatggggtagtgggtgccacataaacaaaagaaaatgatgaatgatttaacaagaaatt |
47946487 |
T |
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| Q |
106 |
gcaaaattgagaaataattgcatgtattttattgttgatcaaacacattttaacatctagttcaaggacaatatggaggtcttcgcccaggtcctccaaa |
205 |
Q |
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| T |
47946488 |
gcaaaattgagaaataattgcatgtattttattgttgatcaaacacattttaacatctagttcaaggacaatatggaggtcttcgcccaggtcctccaaa |
47946587 |
T |
|
| Q |
206 |
aaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtt |
305 |
Q |
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| T |
47946588 |
aaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtt |
47946687 |
T |
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| Q |
306 |
tctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatctgtgctcct |
395 |
Q |
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| T |
47946688 |
tctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcct |
47946777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 192 - 395
Target Start/End: Original strand, 47927998 - 47928201
Alignment:
| Q |
192 |
ccaggtcctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtg |
291 |
Q |
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| T |
47927998 |
ccagctcctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatg |
47928097 |
T |
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| Q |
292 |
gatacttgagagtttctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatctgtgc |
391 |
Q |
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| T |
47928098 |
gatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatctgtgt |
47928197 |
T |
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| Q |
392 |
tcct |
395 |
Q |
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|||| |
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| T |
47928198 |
tcct |
47928201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 198 - 395
Target Start/End: Original strand, 47935438 - 47935635
Alignment:
| Q |
198 |
cctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatact |
297 |
Q |
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| T |
47935438 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagttacatatgctggatatt |
47935537 |
T |
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| Q |
298 |
tgagagtttctgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatctgtgctcct |
395 |
Q |
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|||||| || |||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
47935538 |
tgagagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcct |
47935635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 165 - 287
Target Start/End: Original strand, 47918209 - 47918331
Alignment:
| Q |
165 |
gttcaaggacaatatggaggtcttcgcccaggtcctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggtt |
264 |
Q |
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||||||||||||| ||||| ||||| |||| ||||||||| |||| |||||||||||||||||| || |||| |||| |||||||||||| || |||| |
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| T |
47918209 |
gttcaaggacaatgaggaggccttcgtccagcacctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggtt |
47918308 |
T |
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| Q |
265 |
ctgctgcatatgtacttacaaat |
287 |
Q |
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|| |||| ||||||||||||| |
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| T |
47918309 |
ctatagcatgtgtacttacaaat |
47918331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 328
Target Start/End: Original strand, 47909042 - 47909206
Alignment:
| Q |
164 |
agttcaaggacaatatggaggtcttcgcccaggtcctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggt |
263 |
Q |
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||||||||||||||| ||||| ||| || | |||||||| ||||| ||||| |||||||||||| || || || |||||||||||||| | ||| |
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| T |
47909042 |
agttcaaggacaataacgaggttgtcgtccggcccctccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggc |
47909141 |
T |
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| Q |
264 |
tctgctgcatatgtacttacaaattgtggatacttgagagtttctgaataatccttaattctcac |
328 |
Q |
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||| | |||| ||| |||| |||||||| ||||| |||| || ||| ||||| ||||||||||| |
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| T |
47909142 |
tctccagcatgtgtggttacgaattgtgggtacttaagagcttgtgagtaatctttaattctcac |
47909206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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