View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2884_low_6 (Length: 386)
Name: NF2884_low_6
Description: NF2884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2884_low_6 |
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| [»] scaffold0854 (1 HSPs) |
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| [»] scaffold0836 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 25389373 - 25389586
Alignment:
| Q |
19 |
agtagtagtatatgtgagtataatttgtttccttctaaatttagctactgaccaataaagaagnnnnnnnnctttcaaaggcacaattaagtagttacga |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25389373 |
agtagtagtatatgtgagtataatttgtttccttctaaatttagctactgaccaataaagaagttttttttctttcaaaggcacaattaagtagttacga |
25389472 |
T |
|
| Q |
119 |
attagaattaggtttattgcatatgatatgagttatatatatggtgcatgagtatgaattgtaacatagttttaattgtatttttatagtattttatttc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25389473 |
attagaattaggtttattgcatatgatatgagttatatatatgatgcatgagtatgaattgtaacatagttttaattgtatttttatagtattttatttc |
25389572 |
T |
|
| Q |
219 |
tagcaataaataat |
232 |
Q |
| |
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|||||||||||||| |
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| T |
25389573 |
tagcaataaataat |
25389586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 25389622 - 25389749
Alignment:
| Q |
230 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat-nnnnnnnnnnnnnntagaatttgatttgatgctcc |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
25389622 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttataaaaaataaaaaaaatgaaatttgatttgatgctcc |
25389721 |
T |
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| Q |
329 |
cactattgaaaatttctgcctccgccac |
356 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
25389722 |
cactattgaaaatttctgcctccgccac |
25389749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 16975470 - 16975675
Alignment:
| Q |
22 |
agtagtatatgtgagtataatttgtttccttctaaatttagctactga-----------ccaataaagaagnnnnnnnnctttcaaaggcacaattaagt |
110 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||| |||| | |||| || || |||||||||||||| |
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| T |
16975470 |
agtagtatatgtaagtataatttgtttccttctaaatttagccactgaacatcttgttcacaattatgaagttttttttctctctaaggcacaattaaga |
16975569 |
T |
|
| Q |
111 |
agttacgaattagaattaggtttattgcatatgatatgagttatatatatggtgcatgagtatgaattgtaacatagttttaattgtatttttatagtat |
210 |
Q |
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||||| ||||||| | ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
16975570 |
agttaggaattag-----gttttattgcatatgatatgagttataca----atgtatgagtatgaattgtaacatagttttaattgtaattttata-tat |
16975659 |
T |
|
| Q |
211 |
tttatttctagcaataaa |
228 |
Q |
| |
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|| |||||||||||||| |
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| T |
16975660 |
tt--tttctagcaataaa |
16975675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 16975800 - 16975846
Alignment:
| Q |
310 |
gaatttgatttgatgctcccactattgaaaatttctgcctccgccac |
356 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
16975800 |
gaatttgatttgatgcccccactattgaaaattcctggctccgccac |
16975846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 38437884 - 38438104
Alignment:
| Q |
19 |
agtagtagtatatgtgagtataatttgtttccttctaaatttagctactgaccaataaagaagnnnnnnnnctttcaaaggcacaattaagtagttacga |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38437884 |
agtagtggtatatgtgagtataatttgtttccttctaaatttagctactgaccaataaagaagttttttttctttcaaaggcacaattaagtagttacga |
38437983 |
T |
|
| Q |
119 |
attagaattaggtttattgcatatgatatgagttatatatat-------ggtgcatgagtatgaattgtaacatagttttaattgtatttttatagtatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38437984 |
attagaattaggtttattgcatatgatatgagttatatatatgtaatatggtgcatgagtatgaattgtaacatagttttaattgtatttttatagtatt |
38438083 |
T |
|
| Q |
212 |
ttatttctagcaataaataat |
232 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
38438084 |
ttatttctagcaataaataat |
38438104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 38438140 - 38438267
Alignment:
| Q |
230 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat-nnnnnnnnnnnnnntagaatttgatttgatgctcc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
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| T |
38438140 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataaataggtccatttataaaaaaataaaaaaatggaatttgatttgatgctcc |
38438239 |
T |
|
| Q |
329 |
cactattgaaaatttctgcctccgccac |
356 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
38438240 |
cactattgaaaatttctgcctccgccac |
38438267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 12586957 - 12586912
Alignment:
| Q |
243 |
taatcctcaaacattttatgaatgtgaaagtatataattaggtcca |
288 |
Q |
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|
||||||||||||| || ||||||||||||||||| |||| |||||| |
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| T |
12586957 |
taatcctcaaacacttgatgaatgtgaaagtatacaattgggtcca |
12586912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 419 - 372
Alignment:
| Q |
22 |
agtagtatatgtgagtataatttgtttccttctaaatttagctactga |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
419 |
agtagtatatgtgagtataatttgtttccttctaaatttagccactga |
372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 5180 - 5117
Alignment:
| Q |
230 |
aatcaacaatttttaatcctcaaacattttatgaatgtgaaagtatataattaggtccatttat |
293 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||| |
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|
| T |
5180 |
aatcatcaatttttaatcctcaaacacttgatgaatgtgaaagtataaaattagatccatttat |
5117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 5278 - 5240
Alignment:
| Q |
167 |
tgagtatgaattgtaacatagttttaattgtatttttat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5278 |
tgagtatgaattgtaacatagttttaattgtatttttat |
5240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Complemental strand, 49602501 - 49602456
Alignment:
| Q |
243 |
taatcctcaaacattttatgaatgtgaaagtatataattaggtcca |
288 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||| |||||| |
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| T |
49602501 |
taatcctcaaacacttgatgaatgtgaaagtatacaattgggtcca |
49602456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 22329504 - 22329460
Alignment:
| Q |
243 |
taatcctcaaacattttatgaatgtgaaagtatataattaggtcc |
287 |
Q |
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||||||||||||| || ||||||||||||||||| |||| ||||| |
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| T |
22329504 |
taatcctcaaacacttgatgaatgtgaaagtatacaattgggtcc |
22329460 |
T |
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