View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2884_low_7 (Length: 326)
Name: NF2884_low_7
Description: NF2884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2884_low_7 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 42794494 - 42794179
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42794494 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaagacatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
42794395 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42794394 |
atctgcatcgcgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
42794295 |
T |
|
| Q |
201 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42794294 |
catcctatgtagatagtgtgcgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
42794195 |
T |
|
| Q |
301 |
gattattcggcctttg |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42794194 |
gattattcggcctttg |
42794179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 46428564 - 46428249
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428564 |
ccctgcaagccatctctatacccaaatacaacccccacatctcaacatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
46428465 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46428464 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgattcaaccttcctgaggtcgtttc |
46428365 |
T |
|
| Q |
201 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428364 |
catcctatgtagatagtgtctgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
46428265 |
T |
|
| Q |
301 |
gattattcggcctttg |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
46428264 |
gattattcggcctttg |
46428249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 54812439 - 54812754
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54812439 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagcttcaatcttcttagtgtagcctttaatccatttacc |
54812538 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
54812539 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgccgttgagcttgatccaaccttcctgaggtcgtttc |
54812638 |
T |
|
| Q |
201 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54812639 |
catcctatgtagatagtgtccgtcaacttaggccctctatgaaagagctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
54812738 |
T |
|
| Q |
301 |
gattattcggcctttg |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
54812739 |
gattattcggcctttg |
54812754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 43912443 - 43912762
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| |||||||||| ||||||||||||||||||| | |
|
|
| T |
43912443 |
ccctccaagccatctctatacccaaatacaaccctcacatctcatcatgtaaggtatcacaagctcaaatcttcttaacgtagcctttaatccatttatc |
43912542 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43912543 |
atctacatcacgaaaaatatcaccacaaccgaaaatatgacccatatccttgcaggcatcgtcactgttgagcttgatccaacctttctgaggtcgtttc |
43912642 |
T |
|
| Q |
201 |
catcctatgtagatagt-----gtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtat |
295 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
43912643 |
catcctatgtagatagtattacttccttcaccttaggccctctatgaaggtactccaagttgtagtcttcaatatccctaacgaatctttggattaatat |
43912742 |
T |
|
| Q |
296 |
atttggattattcggccttt |
315 |
Q |
| |
|
|||| |||| ||| |||||| |
|
|
| T |
43912743 |
atttagattgttcagccttt |
43912762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 54346743 - 54346530
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
54346743 |
ccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
54346644 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||| ||||||||||| || ||||| || | |||| |||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||| |
|
|
| T |
54346643 |
gtctgaatcacgaaaaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttc |
54346544 |
T |
|
| Q |
201 |
catcctatgtagat |
214 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
54346543 |
caacctatatagat |
54346530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 27156358 - 27156542
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
|||||||||| || || | ||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
27156358 |
ccctccaagctatgtccaaacccaaatatagtcctcacatctcagcatgtaaggcatcacaagctctaatcttcttagtgtagcctttgatccatctacc |
27156457 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaacctt |
186 |
Q |
| |
|
|||| |||| |||||| || ||||| || | |||| |||||||||||||| ||||| || || || |||||||||||||||| |
|
|
| T |
27156458 |
gtctgaatcatgaaaaaggccgccacatccag-aataacccccatatccttgcaagcaccatcactattaagcttgatccaacctt |
27156542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 34265262 - 34265164
Alignment:
| Q |
16 |
ctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaa |
114 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
34265262 |
ctatacacaaatacaactcccacatctcagcatgtaagacatcacaagcttcaatctttttagtgtaacatttaatccatttaccatctgaatcacgaa |
34265164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 47597781 - 47598096
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47597781 |
cccttcaagccatctttatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
47597880 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
47597881 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagtttgatccaaccttcttgaggtcgtttc |
47597980 |
T |
|
| Q |
201 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
300 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47597981 |
catcctatgtagataatgtctgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
47598080 |
T |
|
| Q |
301 |
gattattcggcctttg |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
47598081 |
gattattcggcctttg |
47598096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 43270981 - 43271189
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
43270981 |
ccctccaagccatgtctatatctaaatacaacccatacatctcagcatgtaaggcatcacaagctcacatcttcttagtgtagcctttaatcaatttacc |
43271080 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagc-ttgatccaaccttcctgaggtcgttt |
199 |
Q |
| |
|
||||| || |||||||| || |||||||| ||||||||||| |||||||||| ||| | | | || ||||| |||||||||||||| || ||||| | |
|
|
| T |
43271081 |
atctgaattacgaaaaagactaccacaacaaaaaatatgacccctatccttgcacgcatcattgttgatgagctttgatccaaccttcatgttgtcgtgt |
43271180 |
T |
|
| Q |
200 |
ccatcctat |
208 |
Q |
| |
|
||||||||| |
|
|
| T |
43271181 |
ccatcctat |
43271189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 34389996 - 34390210
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | || |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
34389996 |
ccctccaagccatgtccaaactcaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtatagcctttgatccatctacc |
34390095 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
| || ||||||||||| || ||||| || | |||| |||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||| |
|
|
| T |
34390096 |
gtttgaatcacgaaaaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttc |
34390195 |
T |
|
| Q |
201 |
catcctatgtagata |
215 |
Q |
| |
|
|| ||||| |||||| |
|
|
| T |
34390196 |
caacctatatagata |
34390210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 36894607 - 36894820
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
36894607 |
ccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
36894706 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgtt-gagcttgatccaaccttcctgaggtcgttt |
199 |
Q |
| |
|
|||| |||| |||||| || ||||| || | |||| |||||||||||||| ||||| || | || ||||||||||||||||| |||| || || |
|
|
| T |
36894707 |
gtctgaatcatgaaaaaagccgccacatccagcaataacccccatatccttgcaagcaccatcattattaaagcttgatccaaccttctcgaggccgctt |
36894806 |
T |
|
| Q |
200 |
ccatcctatgtaga |
213 |
Q |
| |
|
||| ||||| |||| |
|
|
| T |
36894807 |
ccaacctatataga |
36894820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 23409929 - 23409860
Alignment:
| Q |
21 |
cccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatc |
92 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||||||||||| | | |||||||||||||||| ||||||| |
|
|
| T |
23409929 |
cccaaatacaaccaccacgtctcaggatgtaaggcatcaca--cacatatcttcttagtgtagcatttaatc |
23409860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 28561459 - 28561536
Alignment:
| Q |
23 |
caaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| ||||| ||||| ||| |||| || || || |||||||||||||||||||||||||| |||| |
|
|
| T |
28561459 |
caaatacaacccctgcatcttggcatgcaagacatctcatgcatcattcttcttagtgtagcctttaatccatctacc |
28561536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 44145713 - 44145423
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145713 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
44145614 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145613 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
44145514 |
T |
|
| Q |
201 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggatta |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44145513 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagagctccaagttgtagtcttcaatatctctaacgaatgtttggatta |
44145423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 1636006 - 1635793
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||| ||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1636006 |
ccctccaagtcatatccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatttacc |
1635907 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||| ||||||||||| || ||||| || | |||| || ||||||||||| ||||| || || || ||||||||||||||||| ||||| || ||| |
|
|
| T |
1635906 |
gtctgaatcacgaaaaaggccgccacatccagcaataacccctatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttc |
1635807 |
T |
|
| Q |
201 |
catcctatgtagat |
214 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
1635806 |
caacctatatagat |
1635793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 26616915 - 26617128
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| | | ||||||||| | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
26616915 |
ccctccaagccatgtacaaacccaaatatagcacccaaatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
26617014 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||| ||||||||||| || ||||| | |||| | |||||||||||| ||||| || || || ||||||||||||||||| |||| || ||| |
|
|
| T |
26617015 |
gtctgaatcacgaaaaaggccgccacatgaagcaataaccctcatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttc |
26617114 |
T |
|
| Q |
201 |
catcctatgtagat |
214 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
26617115 |
caacctatatagat |
26617128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 38560809 - 38560902
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatcca |
94 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| || |||| |||||||||||||||||| |
|
|
| T |
38560809 |
ccctccaaaccatctctatacccaaatacaacccccacatctcaacatgtaaggcatcacaaactccgatattctcagtgtagcctttaatcca |
38560902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 456577 - 456817
Alignment:
| Q |
32 |
cccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccg |
131 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| || ||||| || |
|
|
| T |
456577 |
cccccacatctcagcatataagacatcacaaactccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaaggccgccacatcca |
456676 |
T |
|
| Q |
132 |
gaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttag |
231 |
Q |
| |
|
| |||| |||||||||||||| ||||| || || || ||| |||||||||| || |||| || ||||| ||||| ||||| | || ||| ||| | |
|
|
| T |
456677 |
gcaataacccccatatccttgcaagcaccatcactattaagcctgatccaaccctctcgaggccgcttccaacctatatagatgattgccttcaactttg |
456776 |
T |
|
| Q |
232 |
gccctctatgaaagtgctccaagttgtagtcttcaatatct |
272 |
Q |
| |
|
| || |||||| ||||||||||| |||||||||||||| |
|
|
| T |
456777 |
gaccaatatgaatatgctccaagttacagtcttcaatatct |
456817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 38560904 - 38560962
Alignment:
| Q |
146 |
atccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatc |
204 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||||||||||||||| ||| ||||| |
|
|
| T |
38560904 |
atccttgcaggcaccgtcactgctgagtttgatccaaccttcctgaggttgttaccatc |
38560962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 40536559 - 40536626
Alignment:
| Q |
3 |
ctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaat |
70 |
Q |
| |
|
||||||||||| |||| |||||||| | ||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
40536559 |
ctccaagccatatctagtcccaaataaagaccccacatctcagcatgcagagcatcacaagctccaat |
40536626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 22065392 - 22065708
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22065392 |
ccctccaagccatttctatacccaaatacaacccccaaatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
22065491 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22065492 |
atctgcatcacgaaaaataccaccacaaccgaaaatatgacccatatccttgcaggcaccgtcactgttgagcttgatccaaccttcctgaggtcgtttc |
22065591 |
T |
|
| Q |
201 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtata-ttt |
299 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
22065592 |
catcctatgtagatagtgttcgtcaccttaggccctctatgaaagagctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttt |
22065691 |
T |
|
| Q |
300 |
ggattattcggcctttg |
316 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
22065692 |
ggattattcggcctttg |
22065708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 23949706 - 23949493
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
23949706 |
ccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
23949607 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||| ||||||||||| || ||||| || | |||| |||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||| |
|
|
| T |
23949606 |
gtctgaatcacgaaaaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttc |
23949507 |
T |
|
| Q |
201 |
catcctatgtagat |
214 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
23949506 |
caacctatatagat |
23949493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 23085101 - 23085315
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
23085101 |
ccctccaagccatgtccagacccaaatatagaccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
23085200 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaat-atgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgttt |
199 |
Q |
| |
|
|||| ||||||||||| || || || || | ||| | |||||||||||||| ||||| || || || ||||||||||||||||| ||||| || || |
|
|
| T |
23085201 |
gtctgaatcacgaaaaaggccgcctcatccagcaataaccccccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgctt |
23085300 |
T |
|
| Q |
200 |
ccatcctatgtagat |
214 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
23085301 |
ccaacctatatagat |
23085315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 50952758 - 50952972
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgt-agcctttaatccatttac |
99 |
Q |
| |
|
||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||| |
|
|
| T |
50952758 |
ccctccaagccatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtaagcctttgatctatctac |
50952857 |
T |
|
| Q |
100 |
catctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgttt |
199 |
Q |
| |
|
| |||| ||||||||||| || ||||| || | |||| |||||||||||||| ||||| || || || ||||||||||||||||| |||| || || |
|
|
| T |
50952858 |
cgtctgaatcacgaaaaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgctt |
50952957 |
T |
|
| Q |
200 |
ccatcctatgtagat |
214 |
Q |
| |
|
||| ||||| ||||| |
|
|
| T |
50952958 |
ccaacctatatagat |
50952972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 5308650 - 5308437
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
5308650 |
ccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
5308551 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
| || ||||||||||| | ||||| || | |||| |||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||| |
|
|
| T |
5308550 |
gtttgaatcacgaaaaaggcagccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttc |
5308451 |
T |
|
| Q |
201 |
catcctatgtagat |
214 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
5308450 |
caacctatatagat |
5308437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2601191 - 2601096
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttac |
99 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| ||||| ||||||| ||||||| ||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2601191 |
ccctccaagccatatctatacccaaatacaactcccacgtctca---tgtaaggtatcacaaactccaatctacttagtgtagcctttaattcatttac |
2601096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 1223153 - 1223467
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1223153 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
1223252 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1223253 |
atatgcgtcacgaaaaataccaccacaatcggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
1223352 |
T |
|
| Q |
201 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttg |
300 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
1223353 |
catcctatgtagatagtgtctgtaaccttaggccctctatgaaagagctccaggttgtagtcttcaatatctctaacaaatgtttgg-ttagtatatttg |
1223451 |
T |
|
| Q |
301 |
gattattcggcctttg |
316 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1223452 |
gattattcggcctttg |
1223467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 24473454 - 24473141
Alignment:
| Q |
3 |
ctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccat |
102 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24473454 |
ctccaagccatctctatatccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtaacctttaatccatttaccat |
24473355 |
T |
|
| Q |
103 |
ctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttcca |
202 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
24473354 |
ctgcatcacgaaaaataccaccaaacccagaaatatgacccatatccttgcaggcatcgtcgctgttgagcttgatccaactatcctgaggttgtttcca |
24473255 |
T |
|
| Q |
203 |
tcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttgga |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24473254 |
tcctatgtagataatgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatatttgga |
24473155 |
T |
|
| Q |
303 |
ttattcggcctttg |
316 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24473154 |
ttattcggcctttg |
24473141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 48618942 - 48618729
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | | ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
48618942 |
ccctccaagccatgtccaaatccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
48618843 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
||||| ||||| ||||| || ||||| |||| |||| |||||| ||||||| ||||| || || || ||||||||||||||||| ||||| || ||| |
|
|
| T |
48618842 |
atctgaatcacaaaaaaggccgccacatccggcaataacccccataaccttgcaagcaccatcactattaagcttgatccaaccttcttgaggccgcttc |
48618743 |
T |
|
| Q |
201 |
catcctatgtagat |
214 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
48618742 |
caacctatatagat |
48618729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 8019935 - 8020148
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8019935 |
ccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
8020034 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||| ||||||||||| || ||||| || |||| |||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||| |
|
|
| T |
8020035 |
gtctgaatcacgaaaaaggccgccacatccaacaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttc |
8020134 |
T |
|
| Q |
201 |
catcctatgtagat |
214 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
8020135 |
caacctatatagat |
8020148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 29213920 - 29214190
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | ||||||||| | |||| ||||||||||||| |||||||||||||||| ||||||||||||||||| ||| | |||| |||| |
|
|
| T |
29213920 |
ccctccaagccatgtccaaacccaaatatagcccc-acatctcagcatgcaaggcatcacaagctctaatcttcttagtgtagcatttgacccatctacc |
29214018 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
||| ||||||||||| || ||||| || ||||| ||||||| |||||| ||||| || || |||||||||||||||||||| |||| || ||| |
|
|
| T |
29214019 |
gtctaaatcacgaaaaaggccgccacatccaaaaataatccccatattcttgcaagcaccatcactattgagcttgatccaaccttcatgagaccgcttc |
29214118 |
T |
|
| Q |
201 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatct |
272 |
Q |
| |
|
|| ||||| |||||| | ||| ||| ||| || || ||||||| |||||||| || |||||||||||||| |
|
|
| T |
29214119 |
caacctatatagataatttccttcaactttggaccaatatgaaaatgctccaaattacagtcttcaatatct |
29214190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 24472654 - 24472740
Alignment:
| Q |
143 |
catatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcacctt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
24472654 |
catatccttgcaggcaccgtcgctgttgagcttgatccaactatcctgaggttgtttccatcctatgtagataatgtccgtcacctt |
24472740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 28395677 - 28395757
Alignment:
| Q |
141 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtcc |
221 |
Q |
| |
|
|||||||||||||| || || || || |||||||||||||||||||| || ||| | ||||||| |||||||||| ||||| |
|
|
| T |
28395677 |
cccatatccttgcatgcgccatcactattgagcttgatccaaccttcttgtggttgcttccatcatatgtagataatgtcc |
28395757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 25713334 - 25713261
Alignment:
| Q |
141 |
cccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagat |
214 |
Q |
| |
|
||||| |||||||| ||| | || ||||||||||||||||||||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
25713334 |
cccatgtccttgcaagcatcatcactgttgagcttgatccaaccttcttgaggccgcttccaacctatatagat |
25713261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 29760066 - 29760161
Alignment:
| Q |
32 |
cccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccaca |
127 |
Q |
| |
|
|||||| |||||| ||||||| ||||||||| ||||||||||||||| || || || |||||||| || | || ||||| ||||| |||||||| |
|
|
| T |
29760066 |
cccccatatctcaacatgtaaagcatcacaaactccaatcttcttagcataaccattgatccattttccgtttgtatcacaaaaaaggccaccaca |
29760161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 265
Target Start/End: Original strand, 4560513 - 4560769
Alignment:
| Q |
9 |
gccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcat |
108 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4560513 |
gccatctctgtacccaaatacaacccccacatctcagtatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcat |
4560612 |
T |
|
| Q |
109 |
cacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctat |
208 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4560613 |
cacgaaaaataccaccacaattgaaaatatgacccatatccttgcaggcaccatcgctgtcgagcttgatccaaccttcctgaggtcgtttccatcctat |
4560712 |
T |
|
| Q |
209 |
gtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttc |
265 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4560713 |
gtagatagtgtccgccaccttaggccctttatgaaagtgctccaagttgtagtcttc |
4560769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 18883389 - 18883073
Alignment:
| Q |
1 |
ccctccaagccatctctataccc-aaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttac |
99 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||||||||||||||| || ||||||||||||||| ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
18883389 |
ccctccaagccatatttataccccaaatacaacccccacatctcaacaagtaaggcatcacaagttccaatcttattagtgcagcctttaatccatttac |
18883290 |
T |
|
| Q |
100 |
catctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgttt |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18883289 |
catctgcatcatgaaaaataccaccacaaccggaaatatgacctagatccttggaggcaccgtcgttgttgagcttgatccaaccttcctgaggtcgttt |
18883190 |
T |
|
| Q |
200 |
ccatcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatctctaacgaatgtttggattagtatattt |
299 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||||| | | || || ||||||| |
|
|
| T |
18883189 |
ccatcctatgaagatagtctccttcaccttaggccctatatgaaggtgctccaagttttagtcttcaatatctttaacgaatctctagactaatatattt |
18883090 |
T |
|
| Q |
300 |
ggattattcggcctttg |
316 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
18883089 |
ggattatttggcctttg |
18883073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 34080929 - 34081200
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | ||||||||| | | ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
34080929 |
ccctccaagccatgtccaaacccaaatatagctcccacttatcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
34081028 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||| ||||||||||| ||| ||||| || | |||| |||||||||||||| ||||| || || || ||||||||||||||||| |||| || ||| |
|
|
| T |
34081029 |
gtctgaatcacgaaaaagaccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatccaaccttctcgaggccgcttc |
34081128 |
T |
|
| Q |
201 |
catcctatgtagatagtgtccgtcaccttaggccctctatgaaagtgctccaagttgtagtcttcaatatct |
272 |
Q |
| |
|
|| ||||| ||||| | ||| ||| ||| || || |||||| ||||||||||| | |||||||||||| |
|
|
| T |
34081129 |
caacctatatagatgatttccttcaactttggaccaatatgaatatgctccaagttacaatcttcaatatct |
34081200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 18934061 - 18933970
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatc |
92 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18934061 |
ccctctaagccatctctatacccaaatacaacctccacatctcagcatgtaaggcatcacaagctccaatctttttagtgtagcctttaatc |
18933970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 18259330 - 18259542
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
|||||||| |||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |
|
|
| T |
18259330 |
ccctccaaaccatgtccagacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagtctttgatccatctacc |
18259429 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|||| ||||||||||| || |||| | | |||| |||||||||||||| |||| || || || ||||||||||||||||| |||| || ||| |
|
|
| T |
18259430 |
gtctgaatcacgaaaaaggccgccac-atcaacaataacccccatatccttgcaagcactatcactattaagcttgatccaaccttctcgaggccgcttc |
18259528 |
T |
|
| Q |
201 |
catcctatgtagat |
214 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
18259529 |
caacctatatagat |
18259542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 32216774 - 32216697
Alignment:
| Q |
23 |
caaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
|||||||||||| |||| || |||| |||||||| ||| | |||||||||||| ||||||||||||||||| |||| |
|
|
| T |
32216774 |
caaatacaacccttacatatctgcatataaggcatgacacacaccaatcttcttattgtagcctttaatccatctacc |
32216697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 13186896 - 13186683
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
13186896 |
ccctccaagccatgtccaaacccaaatatagtccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttgatccatctacc |
13186797 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
||| ||||||||||| || ||||| || | |||| |||||||||||||| ||||| || || || ||||||||| ||||||| |||| || ||| |
|
|
| T |
13186796 |
gtctaaatcacgaaaaaggccgccacatccagcaataacccccatatccttgcaagcaccatcactattaagcttgatcaaaccttctcgaggccgcttc |
13186697 |
T |
|
| Q |
201 |
catcctatgtagat |
214 |
Q |
| |
|
|| ||||| ||||| |
|
|
| T |
13186696 |
caacctatatagat |
13186683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 7305275 - 7305465
Alignment:
| Q |
3 |
ctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccat |
102 |
Q |
| |
|
||||||| ||| || | ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||| |||| | |
|
|
| T |
7305275 |
ctccaagtcatgtccaaacccaaatatagcccccacatctcagcatgtaaggcatcacaagctccaatctttttagtgtagtctttgatccatctaccgt |
7305374 |
T |
|
| Q |
103 |
ctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgagg |
193 |
Q |
| |
|
||| |||| |||||| |||||||| || | |||| |||||||||||||| ||||| || || || ||||||||||||||||| ||||| |
|
|
| T |
7305375 |
ctgaatcatgaaaaaggccaccacatccagcaataactcccatatccttgcaagcaccatcactattaagcttgatccaaccttcttgagg |
7305465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 40190612 - 40190726
Alignment:
| Q |
3 |
ctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccat |
102 |
Q |
| |
|
||||||||||| |||| ||||||| | ||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||||| || | | |
|
|
| T |
40190612 |
ctccaagccatgtctaagtccaaatatagcccccacatcttagcatataaggcatcacaagctccaatcttcttaatgtagcctttgatccatctaacgt |
40190711 |
T |
|
| Q |
103 |
ctgcatcacgaaaaa |
117 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
40190712 |
ctgaatcacgaaaaa |
40190726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 37307445 - 37307607
Alignment:
| Q |
39 |
atctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccatctgcatcacgaaaaataccaccacaaccggaaatat |
138 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | | ||||| || | |||| |
|
|
| T |
37307445 |
atctcaacatataaggcatcacaagctccaatcttcttagtgtagcctttgatccatctaccgtctgaatcacgaaaaagatcgccacatccagcaataa |
37307544 |
T |
|
| Q |
139 |
gacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttcca |
202 |
Q |
| |
|
| | |||| ||||| ||||| || ||||||||||| |||||||||| ||||| || ||||| |
|
|
| T |
37307545 |
ccctcgtatctttgcaagcaccatc-atgttgagcttggtccaaccttcttgaggccgcttcca |
37307607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 26381464 - 26381576
Alignment:
| Q |
3 |
ctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttaccat |
102 |
Q |
| |
|
||||||||||| || | | |||||||||| ||||||||||||| |||||| |||||| || |||||||||||||||||| ||||||||||| |||| | |
|
|
| T |
26381464 |
ctccaagccatgtccaatctcaaatacaacgcccacatctcagcttgtaagttatcacacgcaccaatcttcttagtgtagtctttaatccatctacctt |
26381563 |
T |
|
| Q |
103 |
ctgcatcacgaaa |
115 |
Q |
| |
|
||| |||||||| |
|
|
| T |
26381564 |
ctgagtcacgaaa |
26381576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17290037 - 17290001
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaaccccca |
37 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17290037 |
ccctccaagccatctctacacccaaatacaaccccca |
17290001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 3733098 - 3733159
Alignment:
| Q |
33 |
ccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatcca |
94 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
3733098 |
ccccacatctccgcatgtagagcatcacaagaaccaatcttcttcatgtagcctttgatcca |
3733159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 272
Target Start/End: Original strand, 40196717 - 40196849
Alignment:
| Q |
140 |
acccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttccatcctatgtagatagtgtccgtcaccttaggccctcta |
239 |
Q |
| |
|
|||||||| |||||| ||||| | |||||||||||||||||||||| |||| || ||||| ||||| ||||| |||| ||| ||| || || || |
|
|
| T |
40196717 |
acccatattcttgcaagcaccaccattgttgagcttgatccaaccttctcgaggccgcttccaacctatatagatgatgtctttcaactttggaccaata |
40196816 |
T |
|
| Q |
240 |
tgaaagtgctccaagttgtagtcttcaatatct |
272 |
Q |
| |
|
|||| ||||||||||| | |||||||||||| |
|
|
| T |
40196817 |
tgaagatgctccaagttacattcttcaatatct |
40196849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 355911 - 355705
Alignment:
| Q |
1 |
ccctccaagccatctctatacccaaatacaacccccacatctcagcatgtaaggcatcacaagctccaatcttcttagtgtagcctttaatccatttacc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| || ||||||||||||||| | || ||||| |||||||||| |||||||| |||||||| |
|
|
| T |
355911 |
ccctccaagccacatctatacccaaatacaacccc-acatttcggcatgtaaggcatcaaagacttcaatcgtcttagtgtatcctttaattcatttacc |
355813 |
T |
|
| Q |
101 |
atctgcatcacgaaaaataccaccacaaccggaaatatgacccatatccttgcaggcaccgtcgctgttgagcttgatccaaccttcctgaggtcgtttc |
200 |
Q |
| |
|
|| | ||||| ||||| | |||||||| | ||||||||||| |||||||||| ||||| || |||||||||||||| ||||||| || ||| | || |
|
|
| T |
355812 |
atacgaatcacaaaaaagatcaccacaatccaaaatatgacccctatccttgcatgcaccatcattgttgagcttgatcgaaccttcttgtggttgcttt |
355713 |
T |
|
| Q |
201 |
catcctat |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
355712 |
catcctat |
355705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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