View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2884_low_8 (Length: 318)
Name: NF2884_low_8
Description: NF2884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2884_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31537360 - 31537149
Alignment:
| Q |
1 |
aatatgaagtttaattaggcacatgttattgttattgccgcagaatatgagattttggtttgttatacttattattgaaactatgtattgtaagctttgg |
100 |
Q |
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| T |
31537360 |
aatatgaagtttaattaggcacatgttattgttattgccgcagaatatgagattttggtttgttatacttattattgaaactatgtattgtaagctttgg |
31537261 |
T |
|
| Q |
101 |
tttcttagatcgtggtcaatatatgttggcagtgctttaaatatattaattcctttaacaaaattaggcaaaaaccttctaactgctaggatctaatcaa |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31537260 |
tttcttagatcgtggtcaatatatg----------tttaaatatattaattcctttaaaaaaattaggcaaaaaccttctaattgctaggatctaatcaa |
31537171 |
T |
|
| Q |
201 |
aatttgaagtcaaattttagct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
31537170 |
aatttgaagtcaaattttagct |
31537149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 313
Target Start/End: Complemental strand, 31537156 - 31537097
Alignment:
| Q |
254 |
ttttagttgttttaatgtagattcggtacaaaattgctgtgtaaagtcctctgtgctcct |
313 |
Q |
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|||||| | |||||||| ||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
31537156 |
ttttagctattttaatgcagattcggtacaaaattgctgtgtaaagtcctcagtggtcct |
31537097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 5305711 - 5305578
Alignment:
| Q |
115 |
gtcaatatatgttggcagtgctttaaatatattaattcctttaacaaaattaggcaaaaaccttctaactgctaggatctaatcaaaa-tttgaagtcaa |
213 |
Q |
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| T |
5305711 |
gtcaatatatgttggtagtgatttaaatatatttatttctttaaaaaaattaggtgaaaatctcctaattgcta-actctaattaaaattttgaagttaa |
5305613 |
T |
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| Q |
214 |
attttagctgtagagttgctacgtaattattatga |
248 |
Q |
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|||||| ||||||| ||| || | |||| |||||| |
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| T |
5305612 |
attttatctgtagatttggtatggaattgttatga |
5305578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 31714531 - 31714617
Alignment:
| Q |
1 |
aatatgaagtttaattaggcacatgttattgttattgccgcagaatatgagattttggtttgttatacttattattgaaactatgtattgtaa |
93 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||||||| || |||||||||| ||||| |
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| T |
31714531 |
aatatgaagtttaattaggcacatgttattgtt------caagaacatgagatttttctttggtatacttattgttaaaactatgtagtgtaa |
31714617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 2595352 - 2595266
Alignment:
| Q |
1 |
aatatgaagtttaattaggcacatgttattgttattgccgcagaatatgagattttggtttgttatacttattattgaaactatgtattgtaa |
93 |
Q |
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||||||||||||||||||||||||||||||||| |||| |||||||||| |||| |||||||||| || |||||||||| ||||| |
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| T |
2595352 |
aatatgaagtttaattaggcacatgttattgtt------caagaacatgagatttttctttggtatacttattgttaaaactatgtagtgtaa |
2595266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11578703 - 11578735
Alignment:
| Q |
1 |
aatatgaagtttaattaggcacatgttattgtt |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11578703 |
aatatgaagtttaattaggcacatgttattgtt |
11578735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 35662821 - 35662730
Alignment:
| Q |
212 |
aaattttagctgtagagttgctacgtaattattatgaatcctttttagttgttttaatgtagattcggtacaaaattgctgtgtaaagtcct |
303 |
Q |
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||||||||| ||||||||||||||| |||| |||||| | | |||||| |||| |||||| || | |||||||||| |||| |||||||| |
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| T |
35662821 |
aaattttagatgtagagttgctacgcaattgttatgatttttccttagttattttgatgtagttttgctacaaaattgatgtgaaaagtcct |
35662730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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