View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2885-Insertion-10 (Length: 679)
Name: NF2885-Insertion-10
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-10 |
 | |
|
| [»] chr6 (6 HSPs) |
| |
|
| [»] scaffold0302 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 641; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 8 - 679
Target Start/End: Complemental strand, 897949 - 897277
Alignment:
| Q |
8 |
agtacatgaatcaacaaactattagtaacttaacatcaatgcttggattcagagtttaaaacccaaatttcctactaagccaagtgctcatgatacagtg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
897949 |
agtacatgaatcaacaaactattagtaacttaacatcaatgcttggattcagagtttaaaacccaaatttcctactaagccaagtgctcatgatatagtg |
897850 |
T |
|
| Q |
108 |
aaattcaatgaagaattactataggattgaaacaagaatctagtgatcattttgcttttagataaataaatcacttattttgaaaggattgaaaaggaag |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
897849 |
aaattcaatgaagaattactataggattgaaacaagaatctagtgatcattttgcttttagataaataaatcacttattttgaaaggattgaaaaggaaa |
897750 |
T |
|
| Q |
208 |
cctagataaataaagggtttgttaagcattttcatgtccaattctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaact |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
897749 |
cctagataaataaagggtttgttaagcattttcatgtccaattctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaact |
897650 |
T |
|
| Q |
308 |
gcaaaaacaattgtcttaaactcagatttatttgagtcttttaaaccaaagctacatctctcacaatgaattcctcagcacaccacctatacgtgcagct |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
897649 |
gcaaaaacaattgtcttaaactcagatttatttgagtcttttaaaccaaagctacatctctcacaatgaattcctcagcacaccacctatacgtgcagct |
897550 |
T |
|
| Q |
408 |
cccggctttcctttcgatgatccatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttc |
507 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
897549 |
cccggcttccctttcgatgatctatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttc |
897450 |
T |
|
| Q |
508 |
catgttttaatcacttgaattttatacaaatggaccacgtgatacacacacmtgttctacgaagggtttgagacttgagaaaccaaaccacccaatcccc |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
897449 |
catgttttaatcacttgaattttatacaaatggaccacgtgatacacacacatgttctacgaagggtttgagacttgagaaaccaaaccacccaatcccc |
897350 |
T |
|
| Q |
608 |
aacaccayatcacattggtaacaagctgccatgacaacttctgat-aatcctattccctcctcttacgaaaac |
679 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
897349 |
aacaccacatcacattggtaacaagctgccatgacaacttctgataaatcctattcccccctcttacgaaaac |
897277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 227 - 679
Target Start/End: Original strand, 1236711 - 1237174
Alignment:
| Q |
227 |
tgttaagcattttcatgtccaattctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaa |
326 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |||| | ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| ||||| |
|
|
| T |
1236711 |
tgttaagcattttaatgtccaattctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaattgccttaa |
1236810 |
T |
|
| Q |
327 |
actcagatttatttgagtcttttaaaccaaa-----------------gctacatctctcacaatgaattcctcagcacaccacctatacgtgcagctcc |
409 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||| |||||| ||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
1236811 |
actcagattcatttgagccttttaaaccaattgatgttgcaaacatcggcttcatctcacacaatgaattcctcagcagaccacctatacgcgcagctcc |
1236910 |
T |
|
| Q |
410 |
cggctttcctttcgatgatccatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttcca |
509 |
Q |
| |
|
|||||| ||||| || |||||| ||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||| |
|
|
| T |
1236911 |
cggcttcccttttgacgatccaaccacattccattttcaaacattttgtggagggggacaccgtactgctgacaatctactacc-aacaatctctttcca |
1237009 |
T |
|
| Q |
510 |
tgttttaatcacttgaattttatacaaatggaccacgtgat--acacacacmtgttctacgaagggtttgagacttgagaaaccaaaccacccaatcccc |
607 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||| |||||||| || ||||||| | |||||||||||||| |
|
|
| T |
1237010 |
tgttttaatctcttgaattttatacaaatggaccgcgtgatacacacacacacattctatgaagggttggacacttgag-----agaccacccaatcccc |
1237104 |
T |
|
| Q |
608 |
aacaccayatcacattggtaacaagctgccatgacaacttctgat-aatcctattccctcctcttacgaaaac |
679 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
1237105 |
aacaccacatcacattggtaacaagc-gccatgacaacttctgataaatcctat--ccccctcttacgaaaac |
1237174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 241 - 625
Target Start/End: Complemental strand, 1183030 - 1182632
Alignment:
| Q |
241 |
atgtccaattctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttattt |
340 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||| |||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
1183030 |
atgtccaattctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctagactgcaaaaagaattgccttaaactcagattcgttt |
1182931 |
T |
|
| Q |
341 |
gagtcttttaaaccaa-----------------agctacatctctcacaatgaattcctcagcacac--------cacctatacgtgcagctcccggctt |
415 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
1182930 |
gagtcttttaaaccaattgatgttacaaacatcggcttcatctctcacaatgaattcctcagcacacatataaaattcctatacgcgcagctcccggctt |
1182831 |
T |
|
| Q |
416 |
tcctttcgatgatccatccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgtttt |
515 |
Q |
| |
|
|||||||| |||| |||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||| | |||||||||||| |
|
|
| T |
1182830 |
ccctttcgacgatctatccacattccatttcaaaacattttgtggagggggacacc--------------atactgcc-aacaatatttttccatgtttt |
1182746 |
T |
|
| Q |
516 |
aatcacttgaattttatacaaa-----tggaccacgtgatacacacacmtgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaac |
610 |
Q |
| |
|
|||| ||||||||||||||||| |||||| |||||||||||||| | ||||| |||||||||||||||||||| ||| | | ||| ||| ||||| |
|
|
| T |
1182745 |
aatctcttgaattttatacaaatatattggaccgcgtgatacacacacatattctatgaagggtttgagacttgagagacc-acctacctaatttccaac |
1182647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 248 - 655
Target Start/End: Complemental strand, 1193956 - 1193544
Alignment:
| Q |
248 |
attctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttatttgagtctt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||| | |||||| | ||||| |||| |||||| |
|
|
| T |
1193956 |
attctatacttatcttacaacctttcaaccaatattttctgttgaatggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtctt |
1193857 |
T |
|
| Q |
348 |
ttaaaccaa-----------------agctacatctctcacaatgaattcctcagcacaccacctatacgtgcagctcccggctttcctttcgatgatcc |
430 |
Q |
| |
|
|||| |||| ||| |||||| ||||| |||||||||||||||| ||| |||| ||| ||||| |||| ||||| || ||||| |
|
|
| T |
1193856 |
ttaacccaattgatgttgcaaacatcggcttcatctcacacaaagaattcctcagcacacaaccaatacacgcaactcccagcttcccttttgacgatcc |
1193757 |
T |
|
| Q |
431 |
atccacattccatttccaaacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaatttt |
530 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
1193756 |
atccacattccatttcaaaacattttgtggagggggacacc--------------atactgcc-aacaatctttttccatgttttaatctcttgaatttt |
1193672 |
T |
|
| Q |
531 |
atacaaa---tggaccacgtgatacacacacmt----gttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccayatcacatt |
623 |
Q |
| |
|
||||||| |||||| |||||||||||||| | ||| | ||||||||||||||| ||| ||| | | ||| |||||||||||||| |||||||| |
|
|
| T |
1193671 |
atacaaatattggaccgcgtgatacacacacatattcattcaatgaagggtttgagactctagagacc-acctacctaatccccaacaccacatcacatt |
1193573 |
T |
|
| Q |
624 |
ggtaacaagctgccatgacaacttctgataat |
655 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||| |
|
|
| T |
1193572 |
ggaaacaa---gccatgacaacttatgataat |
1193544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 1188807 - 1188686
Alignment:
| Q |
15 |
gaatcaacaaactattagtaacttaacatcaatgcttggattc--agagtttaaaacccaaatttcctactaagccaagtgctcatgatacagtgaaatt |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1188807 |
gaatcaaaaaactattagtaacttaacatcaatgcttggattctaagagtttaaaacccaaattccctactaagccaagtgctcatgatacaatgaaatt |
1188708 |
T |
|
| Q |
113 |
caatgaagaattactataggat |
134 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1188707 |
caatgaagaattactataggat |
1188686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 1183535 - 1183485
Alignment:
| Q |
133 |
attgaaacaagaatctagtgatcattttgcttttagataaataaatcactt |
183 |
Q |
| |
|
||||||| |||||||||| | |||||||| ||||||||||||||||||||| |
|
|
| T |
1183535 |
attgaaagaagaatctagagttcattttgtttttagataaataaatcactt |
1183485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 266 - 654
Target Start/End: Complemental strand, 20184 - 19800
Alignment:
| Q |
266 |
aacctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaaactcagatttatttgagtcttttaaaccaa--------- |
356 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
20184 |
aacctttcaaccaatatttatt-ttgaaaggaaaactagactgcaaaaacaattgccttaaactcagattcatttgagtcttttaaaccaattgatgtca |
20086 |
T |
|
| Q |
357 |
--------agctacatctctcacaatgaattcctcagcacaccacctatacgtgcagctcccggctttcctttcgatgatccatccacattccatttcca |
448 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||||||||||||| |||||||||| |||| |||||| | ||||||||||||||||||| ||| |
|
|
| T |
20085 |
caaacatcagcttcatctctcacaatgaaatcctcaacacaccacctatacctgcagctcccagcttccctttcaacgatccatccacattccattacca |
19986 |
T |
|
| Q |
449 |
aacattttggggagggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtg |
548 |
Q |
| |
|
||||||||| ||||||||||| |||| | |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
19985 |
aacattttgtggagggggacaacgtattgctgacaatct---------------ctttccatgttttaatctcttgagttttatacaaatggaccacgtg |
19901 |
T |
|
| Q |
549 |
atacacacacmtgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccayatcacattggtaacaagctgccatgacaacttc |
648 |
Q |
| |
|
||||||| | ||||| |||||||||||||||||||| ||| | | ||| |||||||| ||||| |||||||||| | ||||||||||||||||| || |
|
|
| T |
19900 |
atacaca----tattctatgaagggtttgagacttgagagacc-acctacctaatccccagcaccacatcacattggcatcaagctgccatgacaacctc |
19806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 20719 - 20673
Alignment:
| Q |
137 |
aaacaagaatctagtgatcattttgcttttagataaataaatcactt |
183 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||| ||||||||| |
|
|
| T |
20719 |
aaacaagaatctagagttcattttgtttttagataaacaaatcactt |
20673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 362 - 654
Target Start/End: Original strand, 20256914 - 20257186
Alignment:
| Q |
362 |
catctctcacaatgaattcctcagcacaccacctatacgtgcagctcccggctttcctttcgatgatccatccacattccatttccaaacattttgggga |
461 |
Q |
| |
|
||||||| |||||||| |||| | ||||| ||||||| ||||||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
20256914 |
catctctaacaatgaaatccttaacacacaacctatatctgcagctcccggcttccctttcaacgatccatccacattccattaccaaacattttgtgga |
20257013 |
T |
|
| Q |
462 |
gggggacaccgtactactgacaatctactgccaaacaatctctttccatgttttaatcacttgaattttatacaaatggaccacgtgatacacacacmtg |
561 |
Q |
| |
|
|||||||||| || | ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20257014 |
gggggacaccatattgctgacaatcta---------------tttccatgttttaatctcttgaattttatacaaatggaccacgtgatacaca----ta |
20257094 |
T |
|
| Q |
562 |
ttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccayatcacattggtaacaagctgccatgacaacttctgataa |
654 |
Q |
| |
|
||||| ||| |||||||||||||||| ||| | | ||| |||||||||||| | |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
20257095 |
ttctatgaaaggtttgagacttgagagacc-acctacctaatccccaacacgacatcacattggtatcaggctgccatgacaacttctgataa |
20257186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 20256285 - 20256331
Alignment:
| Q |
137 |
aaacaagaatctagtgatcattttgcttttagataaataaatcactt |
183 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||| ||||||||| |
|
|
| T |
20256285 |
aaacaagaatctagagttcattttgtttttagataaacaaatcactt |
20256331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 555 - 654
Target Start/End: Complemental strand, 12857361 - 12857263
Alignment:
| Q |
555 |
acacmtgttctacgaagggtttgagacttgagaaaccaaaccacccaatccccaacaccayatcacattggtaacaagctgccatgacaacttctgataa |
654 |
Q |
| |
|
|||| | ||||| |||||||||||||||||||| |||| | ||| |||||||| ||| | |||||||| | | ||||||||||||||||| |||||||| |
|
|
| T |
12857361 |
acacatattctatgaagggtttgagacttgagagaccac-ctacctaatccccagcactacatcacatttgcatcaagctgccatgacaacctctgataa |
12857263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 10204155 - 10204104
Alignment:
| Q |
82 |
ctaagccaagtgctcatgatacagtgaaattcaatgaagaattactataggat |
134 |
Q |
| |
|
|||||||||||||| |||||||| | || |||||||||| ||||||||||||| |
|
|
| T |
10204155 |
ctaagccaagtgcttatgatacaattaa-ttcaatgaagtattactataggat |
10204104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University