View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885-Insertion-11 (Length: 632)
Name: NF2885-Insertion-11
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 83 - 436
Target Start/End: Original strand, 17945827 - 17946196
Alignment:
| Q |
83 |
taaatatccgtaatgataaatcattgcacaagacatgattaaacatga--aatcatctgagacaaaggacatccaagaaacaatgtctaagatcacgaaa |
180 |
Q |
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|||| |||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||| ||||| || ||||||||||||||| |||||| |||| |
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| T |
17945827 |
taaaaatccataatgataagtcattgcacaagacagtattaaacatgagaaatcatctgagagaaaggtca-ccaagaaacaatgtccaagatcgcgaag |
17945925 |
T |
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| Q |
181 |
ccatagtcct--cgacctgaattagcctagatcgcgaagccatatacggtcatatctaagtaaaactataacttgctacaataattaggatgatttgtcc |
278 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||||| |
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| T |
17945926 |
ccatagtcctttcgacctgaattagccttgatcgcgaagccatatacggtcatatctaagttaaagtataatttgctgcaataattaggatgatttgtcc |
17946025 |
T |
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| Q |
279 |
aagataaactagtttac--aatgatgatacaattacaatcttataacttaaattaacaaaaagagatgataaccattgca-----------aatatttca |
365 |
Q |
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| T |
17946026 |
aagataaactagtttacatattgatgatacatgtacaatcttataacttaaattaacaacaagagatgacaaccactgcacatccacaaatagtatttca |
17946125 |
T |
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| Q |
366 |
agaaattaataaaataaacatttagagaagcttgaaagtttctacctcattcttaataagtgtaggatttg |
436 |
Q |
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| T |
17946126 |
agaaattaataaaagaaacatttatagaagcttgaaagtttctacctcattcttaataagtgtaggatttg |
17946196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 236 - 490
Target Start/End: Original strand, 19404784 - 19405052
Alignment:
| Q |
236 |
aagtaaaactataacttgctacaataattaggatgatttgtccaagataaactagtttacaa--tgatgatacaattacaatcttataacttaaattaac |
333 |
Q |
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| T |
19404784 |
aagttaaactataacttgctacaataattaggatgatttgtccaagataaactagtttacatattgatgatacatgtacaatcttataacttaaattaac |
19404883 |
T |
|
| Q |
334 |
aaaaa-gagatgataaccattgcaaat-----------atttcaagaaattaataaaataaacatttagagaagcttgaaagtttctacctcattcttaa |
421 |
Q |
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||||| ||||||| ||||| |||| || |||||||||||||||||||| || |||||| |||||||||||||||||||||| |||||||| |
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| T |
19404884 |
aaaaaagagatgacaaccactgcatatccaaaattagtatttcaagaaattaataaaagaagcatttatagaagcttgaaagtttctaccttattcttaa |
19404983 |
T |
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| Q |
422 |
taagtgtaggatttggaatttgtgaccaatttgacaactctagatataataaatatatcatatcatatc |
490 |
Q |
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| T |
19404984 |
ttagtgtaagatttggaatttgtgacctatttgacaactctagatataataaatatttcatatcatatc |
19405052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 365 - 478
Target Start/End: Original strand, 18018798 - 18018912
Alignment:
| Q |
365 |
aagaaattaataaaataaacatttagagaagcttgaaagtttctacctcattcttaataagtgtaggatttggaatttgtgaccaatttgacaactctag |
464 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
18018798 |
aagaaattaataaaagaaacatttatagaagcttgaaagtttctaccttattcttaatgactgtaggatttggaatttgtgaccaatttgacaactctag |
18018897 |
T |
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| Q |
465 |
at-ataataaatata |
478 |
Q |
| |
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| T |
18018898 |
ataataataaatata |
18018912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 381 - 490
Target Start/End: Original strand, 19417104 - 19417214
Alignment:
| Q |
381 |
aaacatttagagaagcttgaaagtttctacctcattcttaataagtgtaggatttggaatttgtgaccaatttgacaactctagat-ataataaatatat |
479 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||| |
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| T |
19417104 |
aaacatttatagaagcttgaaagtttctacctcattcttaataagtgtaagatttggaatttgtggccaatttgacaactgtagataataataaatatat |
19417203 |
T |
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| Q |
480 |
catatcatatc |
490 |
Q |
| |
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||||||||||| |
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| T |
19417204 |
catatcatatc |
19417214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 520 - 584
Target Start/End: Original strand, 19405054 - 19405118
Alignment:
| Q |
520 |
tctcttattatggcctccaaatgagtcctaaagtcaatcactattgctagttaacattttctcat |
584 |
Q |
| |
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| T |
19405054 |
tctcttattatggcctccaaatgagtcctaaagtcgatcactattgctagttaacattttctcat |
19405118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 515 - 584
Target Start/End: Original strand, 17947532 - 17947601
Alignment:
| Q |
515 |
tcatctctcttattatggcctccaaatgagtcctaaagtcaatcactattgctagttaacattttctcat |
584 |
Q |
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| T |
17947532 |
tcatatctcttattttggcttctaaatgagtcctaaagtcaatcactattgctggttaacattttgtcat |
17947601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 568
Target Start/End: Original strand, 18018956 - 18018999
Alignment:
| Q |
525 |
tattatggcctccaaatgagtcctaaagtcaatcactattgcta |
568 |
Q |
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| T |
18018956 |
tattatggcctccaaatgagtcctaaagtcaatcactattgcta |
18018999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 18096546 - 18096617
Alignment:
| Q |
235 |
taagtaaaactataacttgctacaataattaggatgatttgtccaagataaactagtttacaatgatgataca |
307 |
Q |
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| T |
18096546 |
taagttaaactagaacttgctacaatatattggatgatt-gtccaagataatctagtttacaatgatgataca |
18096617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 18106803 - 18106853
Alignment:
| Q |
100 |
aaatcattgcacaagacatgattaaacatgaaatcatctgagacaaaggac |
150 |
Q |
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| T |
18106803 |
aaatcattgcacaagacagtattaaacatgaaatcatctgagagaaaggac |
18106853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 534 - 584
Target Start/End: Original strand, 19417233 - 19417287
Alignment:
| Q |
534 |
ctccaaatgagtcctaaagtcaat----cactattgctagttaacattttctcat |
584 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19417233 |
ctccaaatgagtcctaaagtcaattaaacactattgctagttaacattttctcat |
19417287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 19458070 - 19458141
Alignment:
| Q |
235 |
taagtaaaactataacttgctacaataattaggatgatttgtccaagataaactagtttacaatgatgataca |
307 |
Q |
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||||| ||| || |||||||||||||| | |||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
19458070 |
taagttaaaatagaacttgctacaatatattggatgatt-gtccaagataatctagtttacaatgatgataca |
19458141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 19404717 - 19404786
Alignment:
| Q |
88 |
atccgtaatgataaatcattgcacaagacatgattaaacatgaaatcatctgagacaaaggacatccaag |
157 |
Q |
| |
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|||| ||||||| | ||||||||||||||| ||||||||||||||||| | || |||||||||||||| |
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|
| T |
19404717 |
atccataatgatgagtcattgcacaagacaatattaaacatgaaatcattggggagaaaggacatccaag |
19404786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 19379200 - 19379248
Alignment:
| Q |
88 |
atccgtaatgataaatcattgcacaagacatgattaaacatgaaatcat |
136 |
Q |
| |
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|||| ||||||||| | ||||||||||||| ||||||||||||||||| |
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| T |
19379200 |
atccataatgataagtaattgcacaagacagtattaaacatgaaatcat |
19379248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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