View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885-Insertion-12 (Length: 673)
Name: NF2885-Insertion-12
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-12 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 11164016 - 11163783
Alignment:
| Q |
8 |
aataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgttggagacaaaggggatcaca |
107 |
Q |
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| T |
11164016 |
aataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgttggagacaaaggggatcaca |
11163917 |
T |
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| Q |
108 |
tcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaacaagtgaatagaagag |
207 |
Q |
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| T |
11163916 |
tcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaacaagtgaatagaagag |
11163817 |
T |
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| Q |
208 |
gggaaagtttagcgtttttacgaatcctcatatg |
241 |
Q |
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| T |
11163816 |
gggaaagtttagcgtttttacgaatcctcatatg |
11163783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 511 - 673
Target Start/End: Complemental strand, 11163247 - 11163087
Alignment:
| Q |
511 |
tatcttcaaacactgtagggtcatgattgtaaaaaagtggtgcttttagtttttacaaagaaaaaacaaggaaagtatcacgttgtgacaagctcacagt |
610 |
Q |
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| T |
11163247 |
tatcttcaaacactgtagggtcatgattgtaaaaaagtgatgcttttagtttttacaaagaaaaaacaaggaaaggatcacgttgtgacaagct--cagt |
11163150 |
T |
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| Q |
611 |
gtatccacccaaagcatcgatgctagattccgttcaacatgaaagtgaaccatttttacttga |
673 |
Q |
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| T |
11163149 |
gtatccacccaaagcatcgatgctagattccgttcaacatgaaagtgaaccatttttacttga |
11163087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 11157055 - 11156828
Alignment:
| Q |
8 |
aataaagcatatgaaaaaaccctaatagatataagaagagaagaagaagtttgtaacctggtgaatcgaggaggagctgttggagacaaaggggatcaca |
107 |
Q |
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| T |
11157055 |
aataaagcatatgaaaaaaccctaataaatatgagaagagaagaagaagtttggaacctgg---attgaggaggagttgttggaggcaaaggggatcaca |
11156959 |
T |
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| Q |
108 |
tcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaacaagtgaatagaagag |
207 |
Q |
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| T |
11156958 |
tcccatggagattggttaagttgacaaacatgggtttgaaaaatttcaactggaaatgaaccattttgtaaaagtgaaggtgaacaagtgaatagaagag |
11156859 |
T |
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| Q |
208 |
gggaaagtttagcgtttttacgaatcctcat |
238 |
Q |
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| T |
11156858 |
gggaaagctttgtgtttttccgaatcctcat |
11156828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 387 - 512
Target Start/End: Complemental strand, 11163646 - 11163522
Alignment:
| Q |
387 |
cttacacaaacacacacctcgatgataaacctaaataaataataaaaatcaggattttgtttcaattggactattttacccttaggtttattcatgattt |
486 |
Q |
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| T |
11163646 |
cttacacaaacacacacctcgatgataaacctaaa-aaataataaaaatcagggttttgtttcaattggactattttacccttaggtttattcatgattt |
11163548 |
T |
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| Q |
487 |
actcaaggtatggctgcgtctatata |
512 |
Q |
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| T |
11163547 |
actcaaggtatggctgcgtctatata |
11163522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 587 - 648
Target Start/End: Complemental strand, 11176326 - 11176264
Alignment:
| Q |
587 |
atcacgttgtgacaagctcacagtgta-tccacccaaagcatcgatgctagattccgttcaac |
648 |
Q |
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| T |
11176326 |
atcacgtcgtgacaagcctactgtgtaatccacccaaagcatcgatgctagattcggttcaac |
11176264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 11176746 - 11176672
Alignment:
| Q |
100 |
ggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccatttt |
174 |
Q |
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| T |
11176746 |
ggataacatcccatggagattggttaaggtgacaaacgtgcgcttgaaaagtttcaattggaaatgaaccatttt |
11176672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 11163725 - 11163686
Alignment:
| Q |
298 |
tatactgtgtcacatggttttcagttttcacagatctcact |
338 |
Q |
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| T |
11163725 |
tatactgtgtcacatggttttca-ctttcacagatctcact |
11163686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 4703888 - 4704033
Alignment:
| Q |
95 |
aaaggggatcacatcccatggagattggttaagctgacaaatgtgtgtttgaagattttgaggtgaaaatgaaccattttgtagcaatgaagatgaacaa |
194 |
Q |
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| T |
4703888 |
aaaggggatggcatcccatggagattggttaagctgacaaacgtgcatttgaaaaggttcaaccggtaatgaatcattttgtagtagtgaagacgaacaa |
4703987 |
T |
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| Q |
195 |
gtgaatagaagaggggaaagtttagcgtttttacgaatcctcatat |
240 |
Q |
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| T |
4703988 |
gtgaatagaagaggggaaatcttcgcggcttttcgaatcctcatat |
4704033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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