View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885-Insertion-13 (Length: 557)
Name: NF2885-Insertion-13
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-13 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 128 - 557
Target Start/End: Complemental strand, 43716544 - 43716121
Alignment:
| Q |
128 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatagaaa-gctagagatgaatcagtgtct |
226 |
Q |
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| T |
43716544 |
ttcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttctttttatatgttaataacatagaaaagctagagatgaatcagtgtct |
43716445 |
T |
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| Q |
227 |
cccagtaaacctgaagataagtctttattcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttatat |
326 |
Q |
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| T |
43716444 |
cccagtaaacctgaagataagtct--attcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttatat |
43716347 |
T |
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| Q |
327 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattattatatttcaaagggtatcaacagagtttgtggaatat |
426 |
Q |
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| T |
43716346 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattattatatttcaaagggtatcaacagagtttgtggaatat |
43716247 |
T |
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| Q |
427 |
gatttcctctgtatgtgatgtgatctttgaataattatcattaattgagccaccacctgcaggagtgggatctggtgattgtaaatgattgttaacttgt |
526 |
Q |
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| T |
43716246 |
gatttcctctgtatg-----tgatctttgaattattatcattaattgagccaccacctgcaggagtgggatctggtgattgtaaatgattgttaatttgt |
43716152 |
T |
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| Q |
527 |
tattattttttctagcttcttcttcttgttg |
557 |
Q |
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| T |
43716151 |
tattattttttctagcttcttcttcttgttg |
43716121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 43716625 - 43716542
Alignment:
| Q |
8 |
tttttctctccaacaatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctatttatttc |
91 |
Q |
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| T |
43716625 |
tttttctctccaacaatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctattgatttc |
43716542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 6814748 - 6814847
Alignment:
| Q |
5 |
acatttttctctccaacaatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctatttatttctttccaagtatgg |
104 |
Q |
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| T |
6814748 |
acatttttctcaccatcaatatctctggatatgtggagtctttggccagtgatgatggaagcattggcagattgggcaatcgatttttttccaagtatgg |
6814847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 6e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 52887231 - 52887439
Alignment:
| Q |
8 |
tttttctctccaacaatatcactggacatgtggaatctttggccattgatgatggaaacactatcagattgggctatttatttctttccaagtatggctc |
107 |
Q |
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| T |
52887231 |
tttttctctccaacaatatcactggacatgtggaacctttggccattgatgatggaagcactatcagattgggctattgatttcttttcaagtatggctc |
52887330 |
T |
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| Q |
108 |
tcaaatacatctgactacaattcatctcaacttatcttcttcgccttacaaaagttcattacttttcaacttc-tttttatatgttaataacatagaaag |
206 |
Q |
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| T |
52887331 |
tcaactacatttgattgcaatt-atctcaactta---tctttgccttccaaaagttcagtac-tttggacttcttttttacttgttaataacttagacag |
52887425 |
T |
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| Q |
207 |
ctagagatgaatca |
220 |
Q |
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| T |
52887426 |
ctagagatgaatca |
52887439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 404 - 555
Target Start/End: Original strand, 52891346 - 52891495
Alignment:
| Q |
404 |
tatcaacagagtttgtggaatatgatttcctctgtatgtgatgtgatctttgaataattatcattaattgagccaccacctg------caggagtgggat |
497 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||||||||||| | ||| |||||| |
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| T |
52891346 |
tatcaacagagtttgtggaatatgatttcctctgt-----aagtgatctttgaattattatcattaatttggccaccacctgctaggactggaatgggat |
52891440 |
T |
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| Q |
498 |
ctggtgattgtaaatgattgttaacttgttattattttttctagcttcttcttcttgt |
555 |
Q |
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| T |
52891441 |
ctggtgattgtaaatgattgttaac---ttattattttttctagcttcttcttgttgt |
52891495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 252 - 324
Target Start/End: Original strand, 52890957 - 52891029
Alignment:
| Q |
252 |
tattcaaaaacatggaatatctttcaaatattttcctggttgctctgacatctaagttaatataagtctttat |
324 |
Q |
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| T |
52890957 |
tattcaaaaacatggaatatctgtcaaatattttcctggttgctctgacatttaagttaatataagtctttat |
52891029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 52891238 - 52891300
Alignment:
| Q |
327 |
attttctacatgtttactcgattagtttattctgcagatattctggtttctttggacaattat |
389 |
Q |
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| T |
52891238 |
attttctacatatttacttgattagtttattctgcagatattatggttcctttggacaattat |
52891300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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