View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2885-Insertion-14 (Length: 592)

Name: NF2885-Insertion-14
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2885-Insertion-14
NF2885-Insertion-14
[»] chr1 (11 HSPs)
chr1 (73-592)||(30826870-30827375)
chr1 (8-79)||(30826168-30826239)
chr1 (522-592)||(33160702-33160772)
chr1 (521-592)||(29658796-29658867)
chr1 (521-592)||(29691311-29691382)
chr1 (521-592)||(29718823-29718894)
chr1 (433-515)||(29659026-29659108)
chr1 (528-585)||(19468340-19468397)
chr1 (532-588)||(9581276-9581332)
chr1 (532-588)||(9586844-9586900)
chr1 (447-515)||(29719053-29719121)
[»] chr6 (2 HSPs)
chr6 (527-592)||(6594440-6594505)
chr6 (203-322)||(21291422-21291541)
[»] chr5 (2 HSPs)
chr5 (203-322)||(3754327-3754446)
chr5 (203-322)||(14637222-14637341)
[»] chr4 (5 HSPs)
chr4 (203-322)||(7649897-7650016)
chr4 (519-587)||(10634273-10634341)
chr4 (525-584)||(55908567-55908626)
chr4 (204-322)||(11993954-11994072)
chr4 (521-585)||(570542-570606)
[»] chr3 (3 HSPs)
chr3 (203-381)||(51600958-51601135)
chr3 (203-322)||(29027144-29027263)
chr3 (82-127)||(51600837-51600882)
[»] chr2 (1 HSPs)
chr2 (525-584)||(1037503-1037562)


Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 73 - 592
Target Start/End: Original strand, 30826870 - 30827375
Alignment:
Q  73 attaagcatacgcaacacacggactagtggttcagtgagtttcactatatcagcagatttactccagaatccagaatctaaaacatcctccacagannnn 172  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |        
T  30826870 attaaccatacgcaacacacggactagtggttcagtgagtttcactatatcggcagatttactccagaatccagaatctaaaacgtcctccacaaatttt 30826969  T
Q  173 nnnncctttacttctctggcatatgctgaggttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaa 272  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30826970 tttgcctttacttctctggcatatgctgaggttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaa 30827069  T
Q  273 tgaaattagtagcaaaccgagttgttgcaggacgaaggatttctcttccacctgtatgctttctcatcaaatacaaggcataacaaatgattataaagat 372  Q
    |||||||||||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30827070 tgaaattagtagcaaaccgagttggtgcaggacgaa-------------acctgtatgctttctcatcaaatacaaggcataacaa-tgattataaagat 30827155  T
Q  373 atttggtaatactagcagcttgtgacacaactacttcaacttcttccaactttgattttgcacttgatcacaagatctcatattgatctccttgagttgt 472  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827156 atttagtaatactagcagcttgtgacacaactacttcaacttcttccaactttgattttgcacttgatcacaagatctcatattgatctccttgagttgt 30827255  T
Q  473 gtgcatttttgaacgacatgattcgctcccttctctgtgacatcagtacaatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaata 572  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827256 gtgcatttttgaacgacatgattcgctcccttctctgtgacatccgtacaatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaata 30827355  T
Q  573 ggatgttttcatctctcaag 592  Q
    ||||||||||||||||||||    
T  30827356 ggatgttttcatctctcaag 30827375  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 30826168 - 30826239
Alignment:
Q  8 aaagaaaaataaacataaaaatacctattctcgagcctcatgttgtaacgaacaaagactaaatcattaagc 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30826168 aaagaaaaataaacataaaaatacctattctcgagcctcatgttgtaacgaacaaagactaaatcattaagc 30826239  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 522 - 592
Target Start/End: Original strand, 33160702 - 33160772
Alignment:
Q  522 aatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaag 592  Q
    |||||||||||||||||||||||||||||||||| ||  ||| |||||||| |||||||||||||||||||    
T  33160702 aatagctcaaatcaagcacctccaaattggggaacatgaaaggaaacaatacgatgttttcatctctcaag 33160772  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 521 - 592
Target Start/End: Complemental strand, 29658867 - 29658796
Alignment:
Q  521 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaag 592  Q
    |||||||||||||||||||| ||||| ||||||||||| |||| |||||||| |||||||| ||||||||||    
T  29658867 caatagctcaaatcaagcacttccaagttggggaaaatggaagcaaacaatatgatgttttgatctctcaag 29658796  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 521 - 592
Target Start/End: Complemental strand, 29691382 - 29691311
Alignment:
Q  521 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaag 592  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||||||||  ||||||| ||||||||||    
T  29691382 caatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaag 29691311  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 521 - 592
Target Start/End: Complemental strand, 29718894 - 29718823
Alignment:
Q  521 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaag 592  Q
    |||||||||||||||||||||||||| ||||||||||| |||| ||||||||  ||||||| ||||||||||    
T  29718894 caatagctcaaatcaagcacctccaagttggggaaaatggaagcaaacaatataatgttttgatctctcaag 29718823  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 515
Target Start/End: Complemental strand, 29659108 - 29659026
Alignment:
Q  433 cacttgatcacaagatctcatattgatctccttgagttgtgtgcatttttgaacgacatgattcgctcccttctctgtgacat 515  Q
    ||||||||||||| |||||| |||||||||  | ||||| ||||| |||||||| ||||| ||  |||| |||||||||||||    
T  29659108 cacttgatcacaatatctcaaattgatctcagtcagttgcgtgcagttttgaaccacatgttttactccattctctgtgacat 29659026  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 585
Target Start/End: Complemental strand, 19468397 - 19468340
Alignment:
Q  528 tcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatc 585  Q
    |||||||||||| || ||||||||| ||||| |||| ||||| || ||||||||||||    
T  19468397 tcaaatcaagcagctgcaaattgggaaaaatggaagcaaacattatgatgttttcatc 19468340  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 532 - 588
Target Start/End: Original strand, 9581276 - 9581332
Alignment:
Q  532 atcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctct 588  Q
    |||||||| || ||||||||||||||| |||| ||||| || |||||||| ||||||    
T  9581276 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctct 9581332  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 532 - 588
Target Start/End: Original strand, 9586844 - 9586900
Alignment:
Q  532 atcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctct 588  Q
    |||||||| || ||||||||||||||| |||| ||||| || |||||||| ||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctct 9586900  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 515
Target Start/End: Complemental strand, 29719121 - 29719053
Alignment:
Q  447 atctcatattgatctccttgagttgtgtgcatttttgaacgacatgattcgctcccttctctgtgacat 515  Q
    |||||| |||||||||| | |||||  |||| |||||||| ||||| ||| |||| |||||||||||||    
T  29719121 atctcaaattgatctccctcagttgcttgcagttttgaaccacatgtttcactccattctctgtgacat 29719053  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 527 - 592
Target Start/End: Complemental strand, 6594505 - 6594440
Alignment:
Q  527 ctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctctcaag 592  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||||| |||||    
T  6594505 ctcaaatcaagcagctccaaagtggggaaaatagaagcaaacaatatgatgttttcatctttcaag 6594440  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 21291422 - 21291541
Alignment:
Q  203 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 302  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  21291422 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 21291521  T
Q  303 gacgaaggatttctcttcca 322  Q
    ||||||| || |||||||||    
T  21291522 gacgaagtatctctcttcca 21291541  T

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Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 3754327 - 3754446
Alignment:
Q  203 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 302  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  3754327 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 3754426  T
Q  303 gacgaaggatttctcttcca 322  Q
    ||||||| || |||||||||    
T  3754427 gacgaagtatctctcttcca 3754446  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 14637222 - 14637341
Alignment:
Q  203 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 302  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  14637222 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 14637321  T
Q  303 gacgaaggatttctcttcca 322  Q
    ||||||| || |||||||||    
T  14637322 gacgaagtatctctcttcca 14637341  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 7649897 - 7650016
Alignment:
Q  203 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 302  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  7649897 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 7649996  T
Q  303 gacgaaggatttctcttcca 322  Q
    ||||||| || |||||||||    
T  7649997 gacgaagtatctctcttcca 7650016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 519 - 587
Target Start/End: Complemental strand, 10634341 - 10634273
Alignment:
Q  519 tacaatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatctc 587  Q
    ||||||| |||||||| ||||| ||||| ||||| ||||| ||||||||||| | ||||| ||||||||    
T  10634341 tacaataactcaaatccagcacgtccaagttgggaaaaatggaagtaaacaacatgatgtgttcatctc 10634273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 584
Target Start/End: Complemental strand, 55908626 - 55908567
Alignment:
Q  525 agctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcat 584  Q
    ||||||||||||| |  | ||||||||||||||| |||| |||||||| |||||||||||    
T  55908626 agctcaaatcaagaaattgcaaattggggaaaatggaagcaaacaatatgatgttttcat 55908567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 204 - 322
Target Start/End: Complemental strand, 11994072 - 11993954
Alignment:
Q  204 ttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcagg 303  Q
    ||||||| || | ||||||||||||| |||| |  | ||| || ||||  |||||||| | |||||||||||||||||| ||||| |||||||  ||| |    
T  11994072 ttgtccactcttgagatgttaccatggctctaggtgcatttttctgagacaaaatactctacaaagcaatgaaattagtggcaaagcgagttggagcaag 11993973  T
Q  304 acgaaggatttctcttcca 322  Q
    |||||  |||| |||||||    
T  11993972 acgaaatatttatcttcca 11993954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 585
Target Start/End: Original strand, 570542 - 570606
Alignment:
Q  521 caatagctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcatc 585  Q
    ||||| || |||||||| | || |||||||||||||||||||| ||||| ||  |||||||||||    
T  570542 caataacttaaatcaagtatctgcaaattggggaaaatagaagcaaacattaaaatgttttcatc 570606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 203 - 381
Target Start/End: Original strand, 51600958 - 51601135
Alignment:
Q  203 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 302  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||||| ||||| |||||||  ||||    
T  51600958 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag 51601057  T
Q  303 gacgaaggatttctcttccacctgtatgctttctcatcaaatacaaggcataacaaatgattataaagatatttggtaa 381  Q
    ||| ||| || |||||||||   |||   || |||||||||||||| | ||||| |||||||||| | ||| |||||||    
T  51601058 gacaaagtatctctcttccatgagtaaatttcctcatcaaatacaatggataac-aatgattatatacatacttggtaa 51601135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 322
Target Start/End: Original strand, 29027144 - 29027263
Alignment:
Q  203 gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag 302  Q
    ||||||||||| | ||||||||||||| ||||    | ||| || ||||  |||||||| |||||||||||||||||| | ||||| |||||||  ||||    
T  29027144 gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattactggcaaagcgagttggagcag 29027243  T
Q  303 gacgaaggatttctcttcca 322  Q
    ||||||| || |||||||||    
T  29027244 gacgaagtatctctcttcca 29027263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 51600837 - 51600882
Alignment:
Q  82 acgcaacacacggactagtggttcagtgagtttcactatatcagca 127  Q
    |||||||||||| || |||||||| |||||||||||||| ||||||    
T  51600837 acgcaacacacgtacaagtggttctgtgagtttcactatgtcagca 51600882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 584
Target Start/End: Complemental strand, 1037562 - 1037503
Alignment:
Q  525 agctcaaatcaagcacctccaaattggggaaaatagaagtaaacaataggatgttttcat 584  Q
    ||||||||||||| |  | ||||||||||||||| |||| |||||||| |||||||||||    
T  1037562 agctcaaatcaagaaattgcaaattggggaaaatggaagcaaacaatatgatgttttcat 1037503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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