View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885-Insertion-17 (Length: 479)
Name: NF2885-Insertion-17
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 479
Target Start/End: Original strand, 43440074 - 43440558
Alignment:
| Q |
8 |
caagagaggccattgtctcttctatgagtggtgtattgatcctgtattttgcattggtaggccgtaggcatgcgttcccttgagcttcctttgtttttcc |
107 |
Q |
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| T |
43440074 |
caagagaggtcattgtctcttctatgagtggtgtattgatcctgtattttgcattggtagggcgtaggcatgcgttcccttgagcttcctttgtttttcc |
43440173 |
T |
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| Q |
108 |
tctcttctccgtttctctttccggtttaatgagtttgagtacccttttagtgtgtgtttggatatgattttgaaaccacatcacgttaaaatatcacttc |
207 |
Q |
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| T |
43440174 |
tctcttctccgtttcgttttccggtttaatgagtttgagtacccttttagtgtgtgtttggatatgattttaaaaccacatcttgttaaaatatcatttc |
43440273 |
T |
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| Q |
208 |
ccaatgcactccaatcatcaaaattgtgaagctgggttttatagctttaacgttgcgttgatttgctgccgtgcttttctcaattctaccatgcta-cca |
306 |
Q |
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| T |
43440274 |
ccaatgcactccaatcatcaaaattgtgaaactgggttttatagctttaacgttgcggtgatttgctgccgtgcttttctcaattctaccatgctaggca |
43440373 |
T |
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| Q |
307 |
aacaggccattagtctat------------ttctttgttaattaaaagaattgcatatatcaataatctcacactgttttttacaagacacggtgcatat |
394 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43440374 |
aacaggccattagtctatttatataaaatcttctttgttaattaaaagaattgcatatatcaatcatctcacactgttttttacaagacacggtgcatat |
43440473 |
T |
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| Q |
395 |
atagctttattnnnnnnnttatggtagccttctagtttctaagaaaagatgacaatgttcattaggaattaaacctcaagataag |
479 |
Q |
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| T |
43440474 |
atagttttattaaaaaaattatggtagccttctagtttctaagaaaagatgactatgttcattaggaattaaacctcaagataag |
43440558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 161 - 318
Target Start/End: Complemental strand, 11051860 - 11051701
Alignment:
| Q |
161 |
gtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagct-gggttttatagctttaacg |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| | || |||||||| ||||| | ||||||| | ||||| | |
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| T |
11051860 |
gtgtttggatatgattttgaaaccacatcacgttaaaataccacttcccaatacactgtagtcctcaaaattatgaagttggggttttgaaactttagtg |
11051761 |
T |
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| Q |
260 |
tt-gcgttgatttgctgccgtgcttttctcaattctaccatgctaccaaacaggccatta |
318 |
Q |
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| T |
11051760 |
ttggctgtgatttgctgccgtgcttttctcaattctaccgagctaccaaacagaccatta |
11051701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 34122956 - 34123122
Alignment:
| Q |
153 |
tttagtgtgtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagctgggttttatagc |
252 |
Q |
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| T |
34122956 |
tttagtgtgtgtttggatatgattttgaaaccacatcacgttaaaatatcactttccaatgcactccaatcctcaaaattgtgaagctgggttttgaagc |
34123055 |
T |
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| Q |
253 |
tttaacgttgcgttgatttgctgccgtgcttttctcaattctaccatgctaccaaacaggccattag |
319 |
Q |
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| T |
34123056 |
tttagcgttgccgtgatttgctgctgtgcttttctcaattctaccgtgctaccaaacaggccattag |
34123122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 48957742 - 48957585
Alignment:
| Q |
159 |
gtgtgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagctgggttttatagctttaac |
258 |
Q |
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| T |
48957742 |
gtgtgtttggatatgattttgaaaccatatcacgttaaaatatcgcttcccaattcactccaatcctcaaaattgtgaagttgggttttgaagctttagc |
48957643 |
T |
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| Q |
259 |
gttgcgttgatttgctgccgtgcttttctcaattctaccatgctaccaaacaggccat |
316 |
Q |
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| T |
48957642 |
gttgccgtgatttccttccgtccttttctcaattctaccgtgctaccaaacatgccat |
48957585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 168 - 308
Target Start/End: Original strand, 40490333 - 40490470
Alignment:
| Q |
168 |
gatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatc-aaaattgtgaagctgggttttatagctttaacgttgcgtt |
266 |
Q |
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| T |
40490333 |
gatatgattttgaaaccacaccacgttaaaataccactttccaatgcactccaatcctcaaaaattttgaagctgggtgttgaagctttagcattgccat |
40490432 |
T |
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| Q |
267 |
gatttgctgccgtgcttttctcaattctaccatgctaccaaa |
308 |
Q |
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| T |
40490433 |
gatttg----cgtgcttttctcaattctaccgtgctatcaaa |
40490470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 4124078 - 4124001
Alignment:
| Q |
162 |
tgtttggatatgattttgaaaccacatcacgttaaaatatcacttcccaatgcactccaatcatcaaaattgtgaagc |
239 |
Q |
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| T |
4124078 |
tgtttggatgtgagtttgaaaccacatcatgttgcaatatcgtgtcccaaagcactcgaaccatgaaaattgtgaagc |
4124001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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