View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2885-Insertion-18 (Length: 451)

Name: NF2885-Insertion-18
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2885-Insertion-18
NF2885-Insertion-18
[»] chr6 (5 HSPs)
chr6 (8-451)||(12085957-12086413)
chr6 (16-76)||(34446564-34446624)
chr6 (16-84)||(12235511-12235579)
chr6 (17-76)||(6389743-6389802)
chr6 (10-70)||(19369810-19369870)
[»] chr4 (8 HSPs)
chr4 (206-330)||(25302286-25302410)
chr4 (349-435)||(25302466-25302556)
chr4 (17-76)||(20743278-20743337)
chr4 (17-76)||(24343507-24343566)
chr4 (29-76)||(31243548-31243595)
chr4 (18-76)||(3144652-3144710)
chr4 (29-70)||(14465300-14465341)
chr4 (10-74)||(34589710-34589772)
[»] chr3 (10 HSPs)
chr3 (29-74)||(3730167-3730212)
chr3 (17-86)||(15864833-15864902)
chr3 (18-76)||(12704657-12704715)
chr3 (17-77)||(24205040-24205100)
chr3 (29-76)||(52369787-52369834)
chr3 (29-71)||(1830355-1830397)
chr3 (29-83)||(25365474-25365528)
chr3 (29-70)||(20691331-20691372)
chr3 (29-74)||(25892472-25892517)
chr3 (29-73)||(34189439-34189483)
[»] scaffold0199 (1 HSPs)
scaffold0199 (12-87)||(1944-2019)
[»] chr8 (7 HSPs)
chr8 (12-87)||(1676707-1676782)
chr8 (17-84)||(30068020-30068087)
chr8 (29-84)||(39820441-39820496)
chr8 (20-77)||(35431139-35431196)
chr8 (29-76)||(40063963-40064010)
chr8 (17-76)||(44067516-44067575)
chr8 (29-74)||(28883880-28883925)
[»] chr2 (7 HSPs)
chr2 (10-82)||(12748677-12748749)
chr2 (29-76)||(11308004-11308051)
chr2 (29-76)||(25544493-25544540)
chr2 (29-73)||(10535762-10535806)
chr2 (16-76)||(23354652-23354712)
chr2 (29-76)||(24011048-24011095)
chr2 (29-70)||(34006997-34007038)
[»] chr7 (9 HSPs)
chr7 (17-76)||(7133278-7133337)
chr7 (17-84)||(23751900-23751967)
chr7 (29-76)||(23930231-23930278)
chr7 (29-76)||(29812664-29812711)
chr7 (17-76)||(43249993-43250052)
chr7 (29-70)||(18233604-18233645)
chr7 (29-77)||(12278847-12278895)
chr7 (14-70)||(38134412-38134468)
chr7 (17-73)||(38804558-38804614)
[»] chr1 (7 HSPs)
chr1 (17-76)||(42004947-42005006)
chr1 (17-75)||(6573989-6574047)
chr1 (18-74)||(6936402-6936458)
chr1 (24-70)||(2445877-2445923)
chr1 (39-76)||(21145489-21145526)
chr1 (18-74)||(22794080-22794136)
chr1 (17-69)||(40747780-40747832)
[»] scaffold0598 (1 HSPs)
scaffold0598 (10-76)||(8053-8119)
[»] chr5 (6 HSPs)
chr5 (31-73)||(26205763-26205805)
chr5 (29-74)||(31264450-31264495)
chr5 (29-76)||(39695999-39696046)
chr5 (29-76)||(43554533-43554580)
chr5 (16-74)||(18288053-18288111)
chr5 (29-74)||(18607099-18607144)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 451
Target Start/End: Complemental strand, 12086413 - 12085957
Alignment:
Q  8 ctacacgttgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccgacacacctaatccgaatgatgttcg 107  Q
    |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  12086413 ctacacgtcgacacggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccgacacacctaatccgaatg---ttcg 12086317  T
Q  108 tgctccatagctttccgctcaagtaaacctgataaataagattttcaatttgagtagctagctagctcatcctctgccgagtagggtcaa-----nnnnn 202  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  12086316 tgctccatagctttccgcccaagtaaacctgataaagaagattttcaatttgagtagctagctagctcatcctctgccgagtagggtcaatttttttttt 12086217  T
Q  203 nnnacatttacacttccaaagtggaaactcgaccatcatttcggcataagaatggattgcatcttctaaaccaagtttaatgtg--atttttactgtttg 300  Q
       |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  12086216 tttacatttacacttccaaagtggaaactcgaccatcattttggcataagaatggattgcatcttctaaaccaagtttaatgtgatatttttactgtttg 12086117  T
Q  301 atatgctaaaacaaatgacaagctgaaatatagtagtttctttcaatc---------aatataagcaaaaagataaatcaattcatattccagtaatttt 391  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||         ||||||||||||| |||||||||||||||||||||||||||||    
T  12086116 atatgctaaaacaaatgacaaactgaaatacagtagtttctttcaatcctaatgtagaatataagcaaaaggataaatcaattcatattccagtaatttt 12086017  T
Q  392 gaatatttggttaggaagtacgagattaaagtttctttcaacttaatagcatccacatca 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12086016 gaatatttggttaggaagtacgagattaaagtttctttcaacttaatagcacccacatca 12085957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 34446564 - 34446624
Alignment:
Q  16 tgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    |||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||    
T  34446564 tgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcgg 34446624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 12235579 - 12235511
Alignment:
Q  16 tgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccgac 84  Q
    |||||||||| | |||| |||| |||||||||||||||| ||||||||||||||||||| || ||||||    
T  12235579 tgacacggataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtccgacaccgac 12235511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 6389743 - 6389802
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| | ||||||||| ||||| |||||| ||| |||||||||||||||||||||    
T  6389743 gacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 6389802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 19369810 - 19369870
Alignment:
Q  10 acacgttgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcg 70  Q
    |||||||||||||||| | | ||||||| |||||||||||||| | |||||| | ||||||    
T  19369810 acacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 19369870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 206 - 330
Target Start/End: Original strand, 25302286 - 25302410
Alignment:
Q  206 acatttacacttccaaagtggaaactcgaccatcatttcggcataagaatggattgcatcttctaaaccaagtttaatgtgatttttactgtttgatatg 305  Q
    |||||| ||||||||||| || ||||||||| |  ||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25302286 acatttccacttccaaagaggcaactcgacctttgtttgggcataagcatggattgcatcttctaaaccaactttaatgtgatttttactgtttgatatg 25302385  T
Q  306 ctaaaacaaatgacaagctgaaata 330  Q
    ||||||| ||||| |||||||||||    
T  25302386 ctaaaactaatgaaaagctgaaata 25302410  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 435
Target Start/End: Original strand, 25302466 - 25302556
Alignment:
Q  349 aatataagcaaaaagataaatcaattcatatt----ccagtaattttgaatatttggttaggaagtacgagattaaagtttctttcaactt 435  Q
    |||||||||||||||  |||| ||| ||||||    || ||||||||||||||||||| ||||||||||||| || |||||||||||||||    
T  25302466 aatataagcaaaaagggaaatgaatccatattacctccggtaattttgaatatttggtcaggaagtacgagagtacagtttctttcaactt 25302556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 20743337 - 20743278
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| | ||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  20743337 gacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 20743278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 24343507 - 24343566
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| | ||||||||| ||| |||||||||||| |||| ||||||||||||||||    
T  24343507 gacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcgg 24343566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 31243595 - 31243548
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| |||||||||||||||| |||||||||||||| ||||||    
T  31243595 aatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcgg 31243548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 3144710 - 3144652
Alignment:
Q  18 acacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    |||||||| | ||||| ||| ||||| |||||| ||| |||||||||||||||||||||    
T  3144710 acacggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 3144652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 14465341 - 14465300
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcg 70  Q
    ||||||||| |||||||||||||| |||||||||| ||||||    
T  14465341 aatttgagaaaatgacataattcaatttaatcatatgtgtcg 14465300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 34589772 - 34589710
Alignment:
Q  10 acacgttgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtc 74  Q
    |||| ||||||| ||| ||||||||||| |||||||||||||| | |||||||  ||||||||||    
T  34589772 acacattgacaccgataacaatttgagaaaatgacataattcaatgtaatcat--gtgtcgtgtc 34589710  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 3730212 - 3730167
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtc 74  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  3730212 aatttgagataatgacataattcagtgtaatcataggtgtcgtgtc 3730167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 15864833 - 15864902
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccgacac 86  Q
    ||||||||| | ||||||| | ||||| |||||| ||| |||||||||||||||||||||| ||||||||    
T  15864833 gacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgacac 15864902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 12704715 - 12704657
Alignment:
Q  18 acacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    |||||||| | ||||||| | |||||||||||||| | |||||||||||||||||||||    
T  12704715 acacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcgg 12704657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 24205100 - 24205040
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgga 77  Q
    ||||||||| | ||||||||| ||||||||||| |||| |||| ||| |||||||||||||    
T  24205100 gacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgga 24205040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 52369787 - 52369834
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| ||| |||||||||| | |||||||||||||||||||||    
T  52369787 aatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcgg 52369834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 1830355 - 1830397
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgt 71  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||    
T  1830355 aatttaagaaaatgacataattcagtgtaatcataggtgtcgt 1830397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 25365474 - 25365528
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccga 83  Q
    |||||||||  |||||||||||| || |||||||| ||||||||||||| |||||    
T  25365474 aatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcggacaccga 25365528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 20691331 - 20691372
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcg 70  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  20691331 aatttgagaaaatgacataattcagtgtaatcatatgtgtcg 20691372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 25892472 - 25892517
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtc 74  Q
    ||||| ||| ||||| |||||||||| |||||||||||||||||||    
T  25892472 aatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtc 25892517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 34189439 - 34189483
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgt 73  Q
    ||||||||| ||||||||| |||||| ||||| ||||||||||||    
T  34189439 aatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgtgt 34189483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 1944 - 2019
Alignment:
Q  12 acgttgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccgacaca 87  Q
    |||| ||||||||| | |||||| || ||||||||| || ||| |||||||||||||||||||||| |||||||||    
T  1944 acgtcgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcggacaccgacaca 2019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 1676707 - 1676782
Alignment:
Q  12 acgttgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccgacaca 87  Q
    |||| ||||||||| | |||||| || ||||||||| || ||| |||||||||||||||||||||| |||||||||    
T  1676707 acgtcgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcggacaccgacaca 1676782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 30068087 - 30068020
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccgac 84  Q
    ||||||||| | ||||||||| |||||||||||||||| ||||| |||||| || |||||||||||||    
T  30068087 gacacggataataatttgagaaaatgacataattcagtataatcgtaggtgccgagtcggataccgac 30068020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 39820441 - 39820496
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccgac 84  Q
    ||||||||| ||||| |||||| ||| |||||||||||||||||||||| ||||||    
T  39820441 aatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgac 39820496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 35431196 - 35431139
Alignment:
Q  20 acggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgga 77  Q
    |||||| | ||||||||| ||||||||| || ||| ||||||||||||||||||||||    
T  35431196 acggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcgga 35431139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 40063963 - 40064010
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| |||||||||||||| | |||||||||| ||||||||||    
T  40063963 aatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcgg 40064010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 44067516 - 44067575
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| | ||||||||| ||||||||||| |||| |||| ||| ||||||||||||    
T  44067516 gacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg 44067575  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 28883925 - 28883880
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtc 74  Q
    ||||||||| ||||||||||||||||  ||||||||||||| ||||    
T  28883925 aatttgagaaaatgacataattcagtggaatcataggtgtcttgtc 28883880  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 12748677 - 12748749
Alignment:
Q  10 acacgttgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccg 82  Q
    ||||| ||||| |||| | ||||||||| ||||||||| |||||| ||||||||||||| |||||||| ||||    
T  12748677 acacgctgacatggataataatttgagaaaatgacatagttcagtgtaatcataggtgttgtgtcggacaccg 12748749  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 11308051 - 11308004
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||| | |||||||||||||||| |||||||||||||||||||||    
T  11308051 aatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcgg 11308004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 25544493 - 25544540
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| ||||| |||||||||| |||||||||||||||||||||    
T  25544493 aatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcgg 25544540  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 10535806 - 10535762
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgt 73  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||    
T  10535806 aatttgagaaaatgacataattcagtgtaatcataagtgtcgtgt 10535762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 23354712 - 23354652
Alignment:
Q  16 tgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    |||||| ||| | ||||||||| ||||| |||||| ||| |||||||||||||||||||||    
T  23354712 tgacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 23354652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 24011048 - 24011095
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| |||||    
T  24011048 aatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcgg 24011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 34007038 - 34006997
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcg 70  Q
    ||||||||| | |||||||||||||| |||||||||||||||    
T  34007038 aatttgagaaattgacataattcagtgtaatcataggtgtcg 34006997  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 7133337 - 7133278
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||| ||||| ||||||||| |||||||||||||||| ||||||||||||  |||||||    
T  7133337 gacacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcgg 7133278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 23751900 - 23751967
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcggataccgac 84  Q
    ||||||||| | ||||||| | ||||| |||||| ||| |||||||||||||||||||||| ||||||    
T  23751900 gacacggataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtcggacaccgac 23751967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 23930231 - 23930278
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  23930231 aatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcgg 23930278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 29812711 - 29812664
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| ||||| |||||| ||| |||||||||||||||||||||    
T  29812711 aatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 29812664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 43249993 - 43250052
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| | ||||||||| ||||||||||| |||| |||| ||| ||||||||||||    
T  43249993 gacacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg 43250052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 18233645 - 18233604
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcg 70  Q
    ||||||||| |||||||||||||||| |||| ||||||||||    
T  18233645 aatttgagaaaatgacataattcagtgtaattataggtgtcg 18233604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 12278847 - 12278895
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgga 77  Q
    ||||| ||| |||||||||||||||| |||| ||| |||||||||||||    
T  12278847 aatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtcgga 12278895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 38134468 - 38134412
Alignment:
Q  14 gttgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcg 70  Q
    |||||||| ||| | ||||||||| |||||||||||||| | |||||||| ||||||    
T  38134468 gttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcg 38134412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 38804614 - 38804558
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgt 73  Q
    ||||||||| | ||||| ||| ||||||||||| |||  ||||||||||||||||||    
T  38804614 gacacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgt 38804558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 42005006 - 42004947
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| | ||||||||| |||||||||||| ||| ||||||||||||| |||||||    
T  42005006 gacacggataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcgg 42004947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 6573989 - 6574047
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcg 75  Q
    ||||||||||| ||||||||| ||||| |||||| ||| ||||||||||||| ||||||    
T  6573989 gacacggatgataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 6936458 - 6936402
Alignment:
Q  18 acacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtc 74  Q
    |||||||| | ||| ||||| |||||||||||| ||| |||||||||||||||||||    
T  6936458 acacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtc 6936402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 2445877 - 2445923
Alignment:
Q  24 atgacaatttgagataatgacataattcagtttaatcataggtgtcg 70  Q
    |||| ||||||||| |||||||||||||| |||||||||| ||||||    
T  2445877 atgataatttgagaaaatgacataattcaatttaatcatatgtgtcg 2445923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 21145489 - 21145526
Alignment:
Q  39 aatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  21145489 aatgacataattcagtgtaatcataggcgtcgtgtcgg 21145526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 22794136 - 22794080
Alignment:
Q  18 acacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtc 74  Q
    |||||||| | ||||||| | ||||||||||| |||| |||| ||||||||||||||    
T  22794136 acacggataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtc 22794080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 40747832 - 40747780
Alignment:
Q  17 gacacggatgacaatttgagataatgacataattcagtttaatcataggtgtc 69  Q
    ||||||||| | ||||||||| |||||||||||||| | |||| |||||||||    
T  40747832 gacacggataataatttgagaaaatgacataattcaatgtaattataggtgtc 40747780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 8119 - 8053
Alignment:
Q  10 acacgttgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    |||||| || |||||| | ||||||||| |||||||||||||||| ||| ||||||| |||||||||    
T  8119 acacgtcgatacggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcgg 8053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 26205805 - 26205763
Alignment:
Q  31 tttgagataatgacataattcagtttaatcataggtgtcgtgt 73  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  26205805 tttgagaaaatgacataattcagtgtaatcataggtgtcgtgt 26205763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 31264450 - 31264495
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtc 74  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||||    
T  31264450 aatttgagaaaatgacataattcagtgtaatcataagtgtcgtgtc 31264495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 39696046 - 39695999
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| ||||| |||||| ||| |||||||||||||||||||||    
T  39696046 aatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 39695999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 43554533 - 43554580
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 76  Q
    ||||||||| ||||| |||||| ||| |||||||||||||||||||||    
T  43554533 aatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg 43554580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 18288111 - 18288053
Alignment:
Q  16 tgacacggatgacaatttgagataatgacataattcagtttaatcataggtgtcgtgtc 74  Q
    |||||||||| | ||||||||| |||||| ||| ||||| |||||||||||||| ||||    
T  18288111 tgacacggataataatttgagaaaatgacttaactcagtataatcataggtgtcatgtc 18288053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 18607144 - 18607099
Alignment:
Q  29 aatttgagataatgacataattcagtttaatcataggtgtcgtgtc 74  Q
    ||||||||| ||| |||||||||| | |||||||||||||||||||    
T  18607144 aatttgagaaaataacataattcaatgtaatcataggtgtcgtgtc 18607099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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