View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2885-Insertion-2 (Length: 1006)

Name: NF2885-Insertion-2
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2885-Insertion-2
NF2885-Insertion-2
[»] chr1 (8 HSPs)
chr1 (15-841)||(2986883-2987711)
chr1 (603-755)||(5224977-5225129)
chr1 (599-754)||(45069903-45070057)
chr1 (622-759)||(13771141-13771278)
chr1 (605-705)||(26638566-26638666)
chr1 (630-745)||(30381231-30381347)
chr1 (606-690)||(18436296-18436380)
chr1 (599-705)||(29730885-29730990)
[»] chr7 (4 HSPs)
chr7 (605-757)||(41350320-41350472)
chr7 (594-705)||(42121381-42121492)
chr7 (602-705)||(37708441-37708544)
chr7 (599-654)||(33645162-33645217)
[»] chr3 (8 HSPs)
chr3 (628-759)||(49945364-49945493)
chr3 (621-729)||(47495738-47495846)
chr3 (630-705)||(29631690-29631764)
chr3 (600-690)||(12060215-12060305)
chr3 (600-680)||(38672717-38672797)
chr3 (602-705)||(45054701-45054804)
chr3 (621-690)||(32733685-32733754)
chr3 (599-640)||(37919287-37919328)
[»] chr8 (9 HSPs)
chr8 (608-759)||(2147872-2148026)
chr8 (633-745)||(38824638-38824751)
chr8 (602-737)||(11323098-11323233)
chr8 (653-743)||(16612229-16612319)
chr8 (621-754)||(24993603-24993737)
chr8 (602-705)||(14055842-14055943)
chr8 (628-733)||(41862585-41862689)
chr8 (640-744)||(2626903-2627007)
chr8 (600-648)||(6530428-6530476)
[»] chr4 (4 HSPs)
chr4 (600-761)||(2644594-2644755)
chr4 (600-705)||(50685654-50685759)
chr4 (599-705)||(14112173-14112278)
chr4 (602-640)||(54997695-54997733)
[»] chr2 (7 HSPs)
chr2 (632-755)||(2733163-2733286)
chr2 (618-710)||(4282841-4282933)
chr2 (601-705)||(41464061-41464165)
chr2 (605-677)||(18734240-18734312)
chr2 (605-710)||(44151465-44151570)
chr2 (602-687)||(5559661-5559746)
chr2 (603-640)||(36528477-36528514)
[»] chr5 (8 HSPs)
chr5 (602-695)||(10655423-10655516)
chr5 (608-704)||(5683387-5683483)
chr5 (600-705)||(12289065-12289170)
chr5 (599-693)||(29429683-29429777)
chr5 (599-705)||(141372-141478)
chr5 (599-637)||(33741597-33741635)
chr5 (628-705)||(12199290-12199365)
chr5 (600-693)||(14512841-14512934)
[»] chr6 (5 HSPs)
chr6 (599-745)||(22530872-22531018)
chr6 (601-703)||(21970855-21970957)
chr6 (600-658)||(5456531-5456589)
chr6 (633-695)||(533374-533436)
chr6 (600-690)||(7509633-7509723)
[»] scaffold0001 (1 HSPs)
scaffold0001 (609-741)||(508803-508935)
[»] scaffold1372 (1 HSPs)
scaffold1372 (623-662)||(97-136)
[»] scaffold1308 (1 HSPs)
scaffold1308 (623-662)||(1403-1442)


Alignment Details
Target: chr1 (Bit Score: 682; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 15 - 841
Target Start/End: Original strand, 2986883 - 2987711
Alignment:
Q  15 tgtgttagaaatgaagaagaaatgtttggaacatgtaattcatggcaatttggccagtaaatctatgtctgtctattttactgctaagtcagtgactcag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2986883 tgtgttagaaatgaagaagaaatgtttggaacatgtaattcatggcaatgtggccagtaaatctatgtctgtctattttactgctaagtcagtgactcag 2986982  T
Q  115 ttcagctagctaactttggaacnnnnnnnngtggacaaaagctatgagtttggtacatgtcatttatagatctttcggttttgcatagaaatctgccaag 214  Q
    ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2986983 ttcagctagctaactttggaacttttttttgtggacaaaagctatgagtttggtacatgtcatttatagatctttcagttttgcatagaaatctgccaag 2987082  T
Q  215 tgaggtaagcaaaactcgtggctttaatattttctagttaatgtttgtatagttacctgcatttgttgagtcagtaacttcatctaaaacacaattaaga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2987083 tgaggtaagcaaaactcgtggctttaatattttctagttaatgtttgtatagttacctgcatttgttgagtcagtaacttcatctaaaacacaattaaga 2987182  T
Q  315 gatgtcaagaggtcaaatccttaatcacatgtttaattcacacacatttggctgccaatatcaaagttagtatgcattattcatatatggaccatgcacc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2987183 gatgtcaagaggtcaaatccttaatcacatgtttaattcacacacatttggctgccaatatcaaagttagtatgcattattcatatatggaccatgcacc 2987282  T
Q  415 tttctatttgctttcaaaaactggactggtcccaattacagacattgatgataaatcgttatacagttttgaaataattgcactgcgtttatggtctaag 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2987283 tttctatttgctttcaaaaactggactggtcccaattacagacattgatgataaatcgttatacagttttgaaataattgcactgcgtttatggtctaag 2987382  T
Q  515 gatttaaaatttatctaccaaa-ttttatctttattaccattggttaacaaacaaaaagatttagtcatctatgcactccaa-aactgggtcatgttaac 612  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||  | ||| | ||||||||    
T  2987383 gatttaaaatttatctaccaaatttttatctttattaccattagttaacaaacaagaagatttagtcatctctgcactccaactattggataatgttaac 2987482  T
Q  613 ttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatac 712  Q
    || |||  |||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2987483 ttatgtgctaaggacacatgttaagcaaatcaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaacaaattaaatgcaatac 2987582  T
Q  713 gcgaattccaacaaaaagtttctatatttaactacttaacttgtgccctatttccctaaactattttatcaaaacaccccaaagaaaaaaagnnnnnnnn 812  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |            
T  2987583 gcgaattccaacaaaaaatttctacatttaactccttaacttgtgccctatttccctaaactattttatcaaaacaccccaaagaaaaaaggtttttttt 2987682  T
Q  813 nccttatctaccaaaaacaccccaaagta 841  Q
     ||||||||||||||||||||||||||||    
T  2987683 tccttatctaccaaaaacaccccaaagta 2987711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 603 - 755
Target Start/End: Original strand, 5224977 - 5225129
Alignment:
Q  603 tcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaatta 702  Q
    |||||||||||| ||   |||||  ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||||    
T  5224977 tcatgttaacttatgctctaaggacacatgttaagcaaaccaaaaataaaaacattccattaatatttgtgcattcaactaattaaaagttaacaaatta 5225076  T
Q  703 aatgcaatacgcgaattccaacaaaaagtttctatatttaactacttaacttg 755  Q
    |||||||||| ||||||||||| || ||||| || |||||||| |||||||||    
T  5225077 aatgcaatacacgaattccaaccaatagtttttacatttaactccttaacttg 5225129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 599 - 754
Target Start/End: Complemental strand, 45070057 - 45069903
Alignment:
Q  599 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataa 698  Q
    |||||||| ||| |||||| | ||||||||  ||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  45070057 tgggtcatattagcttgtgccctaagggta--tgttaagcaattctaaaatagaaatattccattaatatttgtgcattcaactaattaaaagttaataa 45069960  T
Q  699 attaaatgcaatacgcgaattccaaca-aaaagtttctatatttaactacttaactt 754  Q
    || |||||||||||   |||||||||| ||||||||||| |||||||| ||||||||    
T  45069959 ataaaatgcaatacattaattccaacaaaaaagtttctacatttaactccttaactt 45069903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 622 - 759
Target Start/End: Original strand, 13771141 - 13771278
Alignment:
Q  622 aagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattcc 721  Q
    ||||||| ||||||||||| | ||||||||||||||||  ||||| ||| |||||| || ||| |||||||| | ||||||||  |||||| ||||||||    
T  13771141 aagggtatatgttaagcaacctaaaaatagaaatattttcttaatgtttatgcatttaattaactaaaagttgaaaaattaaactcaatacacgaattcc 13771240  T
Q  722 aacaaaaagtttctatatttaactacttaacttgtgcc 759  Q
    |||| ||| |||||| ||||||||  ||||||||||||    
T  13771241 aacataaaatttctacatttaactcattaacttgtgcc 13771278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 605 - 705
Target Start/End: Complemental strand, 26638666 - 26638566
Alignment:
Q  605 atgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaa 704  Q
    ||||||||||||| |||||||  |||||||||  || | || |||||||||||||  |||||| |||||||||||| ||||||||| |||| ||||||||    
T  26638666 atgttaacttgtgccataaggacacatgttaaagaacctaataatagaaatatttttttaatacttgtgcattcaaataattaaaaattaaaaaattaaa 26638567  T
Q  705 t 705  Q
    |    
T  26638566 t 26638566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 630 - 745
Target Start/End: Original strand, 30381231 - 30381347
Alignment:
Q  630 atgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaacta-attaaaagttaataaattaaatgcaatacgcgaattccaacaaaa 728  Q
    ||||||| ||| | ||||||| ||||||||| |||||| ||||| | |||| |  |||| | ||||| ||||||||| |||||| |||||| ||||||||    
T  30381231 atgttaaacaatctaaaaataaaaatatttccttaatacttgtgtagtcaaattgattagaggttaaaaaattaaattcaatacacgaatttcaacaaaa 30381330  T
Q  729 agtttctatatttaact 745  Q
    |||||||| | ||||||    
T  30381331 agtttctacaattaact 30381347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 606 - 690
Target Start/End: Original strand, 18436296 - 18436380
Alignment:
Q  606 tgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaa 690  Q
    |||||||||||| | | |||| |||||||||| || ||||||| ||||||||||| ||||  |||| |||||||| | |||||||    
T  18436296 tgttaacttgtgcccttagggcacatgttaagaaatccaaaaaaagaaatatttctttaaactttgagcattcaattcattaaaa 18436380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 599 - 705
Target Start/End: Original strand, 29730885 - 29730990
Alignment:
Q  599 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataa 698  Q
    ||||||||| ||||||||||| |||||  | ||||||||||| |||||| |||||| |||   ||||  ||| || |||||| ||||||||||| || ||    
T  29730885 tgggtcatgctaacttgtgtc-taaggacatatgttaagcaatccaaaagtagaaacattctcttaaattttatgtattcaattaattaaaagtaaaaaa 29730983  T
Q  699 attaaat 705  Q
    |||||||    
T  29730984 attaaat 29730990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 4e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 605 - 757
Target Start/End: Complemental strand, 41350472 - 41350320
Alignment:
Q  605 atgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaa 704  Q
    |||||||||||||   |||||| | |||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41350472 atgttaacttgtgctctaagggcatatgttaagcaaatcaaaaataaaaatatttcattaatatttatgcattcaactaattaaaagttaataaattaaa 41350373  T
Q  705 tgcaatacgcgaattccaacaaaaagtttctatatttaactacttaacttgtg 757  Q
    |||||||| ||||||  |||||||| |||||| |||||||| |||||||||||    
T  41350372 tgcaatacacgaattttaacaaaaaatttctacatttaactccttaacttgtg 41350320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 594 - 705
Target Start/End: Complemental strand, 42121492 - 42121381
Alignment:
Q  594 aaaactgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagtt 693  Q
    |||| |||||||||||||||| || | |||||| ||||||||||||| |||||| |||||| |||   ||||  ||||| ||||||| |||| ||||||     
T  42121492 aaaaatgggtcatgttaacttatgccctaagggcacatgttaagcaacccaaaagtagaaacattctcttaaattttgtacattcaattaatgaaaagtg 42121393  T
Q  694 aataaattaaat 705  Q
    || |||||||||    
T  42121392 aaaaaattaaat 42121381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 602 - 705
Target Start/End: Original strand, 37708441 - 37708544
Alignment:
Q  602 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaatt 701  Q
    |||||||||||||||| | |||||| | |||||||| ||  || ||||||||| ||| | ||||  ||||||||||||| |||| |||||| || |||||    
T  37708441 gtcatgttaacttgtgccgtaagggcagatgttaagtaactcagaaatagaaacattcccttaaattttgtgcattcaattaatcaaaagtaaaaaaatt 37708540  T
Q  702 aaat 705  Q
    ||||    
T  37708541 aaat 37708544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 654
Target Start/End: Original strand, 33645162 - 33645217
Alignment:
Q  599 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaa 654  Q
    ||||||||| ||||||||| | |||||| ||||||||| ||| |||||||||||||    
T  33645162 tgggtcatgctaacttgtgacctaagggcacatgttaaacaacccaaaaatagaaa 33645217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 9e-45; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 628 - 759
Target Start/End: Complemental strand, 49945493 - 49945364
Alignment:
Q  628 acatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaa 727  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||    
T  49945493 acatgttaagca--cccaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaacaaattaaatgcaatatacgaattccaacaaa 49945396  T
Q  728 aagtttctatatttaactacttaacttgtgcc 759  Q
    ||||||||| |||||| | |||||||||||||    
T  49945395 aagtttctacatttaattccttaacttgtgcc 49945364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 621 - 729
Target Start/End: Original strand, 47495738 - 47495846
Alignment:
Q  621 taagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattc 720  Q
    |||||| |||||||||||||   ||||||||||||||||| |||||||||||||||| || |||||||||||| | ||| ||||| |||||| ||||||     
T  47495738 taagggcacatgttaagcaactaaaaaatagaaatatttctttaatatttgtgcatttaattaattaaaagttgaaaaaataaattcaatacacgaattt 47495837  T
Q  721 caacaaaaa 729  Q
    ||| |||||    
T  47495838 caaaaaaaa 47495846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 630 - 705
Target Start/End: Complemental strand, 29631764 - 29631690
Alignment:
Q  630 atgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaat 705  Q
    ||||||| ||| ||||||||| ||||||||| |||||| ||||||||||||  ||||||||||||| |||||||||    
T  29631764 atgttaaacaacccaaaaataaaaatatttccttaatacttgtgcattcaatcaattaaaagttaa-aaattaaat 29631690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 600 - 690
Target Start/End: Original strand, 12060215 - 12060305
Alignment:
Q  600 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaa 690  Q
    ||||||||||||||||||   |||||| | ||||||| |||  |||||||||||| ||||||||||  ||||||||||||| |||| ||||    
T  12060215 gggtcatgttaacttgtgctctaagggcatatgttaaacaactcaaaaatagaaacatttcattaaattttgtgcattcaattaatcaaaa 12060305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 600 - 680
Target Start/End: Original strand, 38672717 - 38672797
Alignment:
Q  600 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaa 680  Q
    ||||||||||||||| ||   ||| |||||||||||| ||| |||||||||||||||||   |||| ||||||||||||||    
T  38672717 gggtcatgttaacttctgctctaaaggtacatgttaaacaacccaaaaatagaaatattctcttaagatttgtgcattcaa 38672797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 602 - 705
Target Start/End: Complemental strand, 45054804 - 45054701
Alignment:
Q  602 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaatt 701  Q
    |||||||||||||||| | |||||| |||||||||||||  ||||| |||||| ||| | || |  ||||| ||||||| |||| |||||| || |||||    
T  45054804 gtcatgttaacttgtgccctaagggcacatgttaagcaactcaaaagtagaaacattcccttgaattttgtacattcaattaatcaaaagtaaaaaaatt 45054705  T
Q  702 aaat 705  Q
    ||||    
T  45054704 aaat 45054701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 690
Target Start/End: Complemental strand, 32733754 - 32733685
Alignment:
Q  621 taagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaa 690  Q
    |||||| |||||||||| || ||||||| ||||||||||  ||||  ||||||||||||| | |||||||    
T  32733754 taagggcacatgttaagaaatccaaaaaaagaaatattttcttaaactttgtgcattcaattcattaaaa 32733685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 640
Target Start/End: Complemental strand, 37919328 - 37919287
Alignment:
Q  599 tgggtcatgttaacttgtgtcataagggtacatgttaagcaa 640  Q
    |||||||||||||||||| || | ||||||||||||||||||    
T  37919328 tgggtcatgttaacttgtttcttcagggtacatgttaagcaa 37919287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 608 - 759
Target Start/End: Original strand, 2147872 - 2148026
Alignment:
Q  608 ttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaat---taaaagttaataaattaaa 704  Q
    |||||||||||  |||||| ||||||||||||| |  ||||||||||||| |||||||||||||||||||||||||||   |||||||||| ||||||||    
T  2147872 ttaacttgtgttttaagggcacatgttaagcaatctcaaaatagaaatatctcattaatatttgtgcattcaactaattactaaaagttaacaaattaaa 2147971  T
Q  705 tgcaatacgcgaattccaacaaaaagtttctatatttaactacttaacttgtgcc 759  Q
    |||||||  |||||||||||||||||||||||  ||||||| |||||||||||||    
T  2147972 tgcaatatacgaattccaacaaaaagtttctacgtttaactccttaacttgtgcc 2148026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 633 - 745
Target Start/End: Original strand, 38824638 - 38824751
Alignment:
Q  633 ttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaatt-aaaagttaataaattaaatgcaatacgcgaattccaacaaaaagt 731  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||||||  ||||||||||||||| |    
T  38824638 ttaagcaaatcaaaaatagaaatatttcattaataattgtgcattcaactaattaaaaagttaacaaattaaatacaatacatgaattccaacaaaaaat 38824737  T
Q  732 ttctatatttaact 745  Q
    ||||| ||||||||    
T  38824738 ttctacatttaact 38824751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 602 - 737
Target Start/End: Original strand, 11323098 - 11323233
Alignment:
Q  602 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaatt 701  Q
    |||||| ||||||||||| ||| || |||| ||||||||  |||||||| | ||||||  ||||||||||||||||||| ||||| |||||| | |||||    
T  11323098 gtcatgctaacttgtgtcttaaaggcacatattaagcaacacaaaaataaagatatttttttaatatttgtgcattcaattaattcaaagttgaaaaatt 11323197  T
Q  702 aaatgcaatacgcgaattccaacaaaaagtttctat 737  Q
    |||| |||| |  ||||| ||||||||| |||||||    
T  11323198 aaatccaatgcatgaatttcaacaaaaaatttctat 11323233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 653 - 743
Target Start/End: Original strand, 16612229 - 16612319
Alignment:
Q  653 aatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaaaagtttctatatttaa 743  Q
    |||||| |||||||||||||||||| ||| ||||||||||||| |||||||||| ||||| | ||||| |||||||| |||||| ||||||    
T  16612229 aatattccattaatatttgtgcatttaacgaattaaaagttaacaaattaaatgtaatacacaaattctaacaaaaaatttctacatttaa 16612319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 621 - 754
Target Start/End: Complemental strand, 24993737 - 24993603
Alignment:
Q  621 taagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagtt-aataaattaaatgcaatacgcgaatt 719  Q
    |||||| ||||||||| |||  ||||||||||| |||||| |||| |||| ||| ||||| |||||||||||| || |||||||||  ||| | | ||||    
T  24993737 taagggcacatgttaaacaactcaaaaatagaattatttccttaaaatttatgctttcaattaattaaaagttaaaaaaattaaatttaatgcacaaatt 24993638  T
Q  720 ccaacaaaaagtttctatatttaactacttaactt 754  Q
    |||| |||||||||||| |||| |||  |||||||    
T  24993637 ccaataaaaagtttctacatttgactcattaactt 24993603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 602 - 705
Target Start/End: Complemental strand, 14055943 - 14055842
Alignment:
Q  602 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaatt-aaaagttaataaat 700  Q
    |||||||||||||||| ||| |||| ||||||||||||| ||   |||| || |||| | |||| |||||| ||||||| ||||| ||||||||| ||||    
T  14055943 gtcatgttaacttgtgccattagggcacatgttaagcaaccc---aataaaattattcccttaagatttgtacattcaattaattaaaaagttaaaaaat 14055847  T
Q  701 taaat 705  Q
    |||||    
T  14055846 taaat 14055842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 733
Target Start/End: Complemental strand, 41862689 - 41862585
Alignment:
Q  628 acatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaa 727  Q
    ||||||||| |||  ||||||||  |||||||| ||||||||| | |||| || ||||||||| |||| | ||||||| |||||  |||||| |||||||    
T  41862689 acatgttaaacaactcaaaaataagaatatttctttaatatttatacatttaattaattaaaa-ttaaaatattaaattcaatattcgaatttcaacaaa 41862591  T
Q  728 aagttt 733  Q
    ||||||    
T  41862590 aagttt 41862585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 640 - 744
Target Start/End: Complemental strand, 2627007 - 2626903
Alignment:
Q  640 aaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaaaagtttctatat 739  Q
    |||||||||||||||||||   |||||| || ||||||||| |||||||||||||  || || ||| |||| | | |||| |||||||||  ||||| ||    
T  2627007 aaccaaaaatagaaatattcttttaatacttatgcattcaattaattaaaagttataaagttgaattcaatgcacaaatttcaacaaaaaaattctacat 2626908  T
Q  740 ttaac 744  Q
    |||||    
T  2626907 ttaac 2626903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 600 - 648
Target Start/End: Complemental strand, 6530476 - 6530428
Alignment:
Q  600 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaa 648  Q
    |||||||||||||||||||| |||||  ||||||||||||| |||||||    
T  6530476 gggtcatgttaacttgtgtcctaaggacacatgttaagcaacccaaaaa 6530428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 600 - 761
Target Start/End: Complemental strand, 2644755 - 2644594
Alignment:
Q  600 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaa 699  Q
    |||| ||||||||||||    ||| ||||||||||||||||  | |||||||||||||| ||||||||||| |||||| || |||||||||||||| |||    
T  2644755 gggttatgttaacttgtactctaaaggtacatgttaagcaattctaaaatagaaatattccattaatatttatgcatttaagtaattaaaagttaacaaa 2644656  T
Q  700 ttaaatgcaatacgcgaattccaacaaaaagtttctatatttaactacttaacttgtgccct 761  Q
    ||||| ||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||    
T  2644655 ttaaacgcaatacacgaatttcaacaaaaagtttctacatttaactccttaacttgtgccct 2644594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 600 - 705
Target Start/End: Complemental strand, 50685759 - 50685654
Alignment:
Q  600 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaa 699  Q
    ||||||||||||| ||||   |||||| |||| ||||||||  |||||||||||||||||  || |  ||||||||||||| ||||||||||| || |||    
T  50685759 gggtcatgttaacctgtgctctaagggcacattttaagcaattcaaaaatagaaatattttcttgaattttgtgcattcaattaattaaaagtaaaaaaa 50685660  T
Q  700 ttaaat 705  Q
    ||||||    
T  50685659 ttaaat 50685654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 599 - 705
Target Start/End: Original strand, 14112173 - 14112278
Alignment:
Q  599 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataa 698  Q
    ||||||||||||||||||||| |||||  ||| ||||||||| |||||| ||||||||||   ||||  ||| |||||||||||| | ||||| ||| ||    
T  14112173 tgggtcatgttaacttgtgtcttaaggacacaagttaagcaacccaaaagtagaaatattctcttaagttttatgcattcaactattcaaaag-taaaaa 14112271  T
Q  699 attaaat 705  Q
    |||||||    
T  14112272 attaaat 14112278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 602 - 640
Target Start/End: Original strand, 54997695 - 54997733
Alignment:
Q  602 gtcatgttaacttgtgtcataagggtacatgttaagcaa 640  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  54997695 gtcatgttaacttgtgtcattagggcacatgttaagcaa 54997733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 8e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 632 - 755
Target Start/End: Original strand, 2733163 - 2733286
Alignment:
Q  632 gttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaatacgcgaattccaacaaaaagt 731  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||| |||||| |||||  ||| |||||||||||||| | ||||||||||||||||||    
T  2733163 gttaatcaatcccaaaatagaaatatttcattaatatttgtgcatttaactaaataaaatataaaaaattaaatgcaatgcacgaattccaacaaaaagt 2733262  T
Q  732 ttctatatttaactacttaacttg 755  Q
    ||||  ||||||||  ||||||||    
T  2733263 ttctgcatttaacttattaacttg 2733286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 618 - 710
Target Start/End: Complemental strand, 4282933 - 4282841
Alignment:
Q  618 tcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaatgcaat 710  Q
    ||||||||| |||||||| |||| ||||||||| |||||||   |||| ||||||  |||||| |||||||||||||| ||||||||| ||||    
T  4282933 tcataagggaacatgttatgcaacccaaaaataaaaatattcttttaaaatttgtatattcaattaattaaaagttaaaaaattaaattcaat 4282841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 601 - 705
Target Start/End: Original strand, 41464061 - 41464165
Alignment:
Q  601 ggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatt-tcattaatatttgtgcattcaactaattaaaagttaataaa 699  Q
    |||||||| ||||||||||||||||| |||||||||  || |||||| || ||||||| || | ||| ||||||||||||| |||| |||||||||  ||    
T  41464061 ggtcatgtaaacttgtgtcataagggcacatgttaataaatccaaaagtaaaaatattctcttgaat-tttgtgcattcaattaatcaaaagttaaagaa 41464159  T
Q  700 ttaaat 705  Q
    ||||||    
T  41464160 ttaaat 41464165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 605 - 677
Target Start/End: Original strand, 18734240 - 18734312
Alignment:
Q  605 atgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcatt 677  Q
    ||||||||||||||| |||||| |||||| |||||| |  ||||||||||||||  |||||||||||| ||||    
T  18734240 atgttaacttgtgtcgtaagggcacatgtcaagcaatcttaaaatagaaatattctattaatatttgttcatt 18734312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 605 - 710
Target Start/End: Original strand, 44151465 - 44151570
Alignment:
Q  605 atgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatattt-cattaatatttgtgcattcaactaattaaaagttaataaattaa 703  Q
    ||||||||||||||| |||||  || |||||||||  | ||||||||| |||||| | |||||| |||| |||||||  ||||||||||||| |||||||    
T  44151465 atgttaacttgtgtcctaaggacacttgttaagcaccctaaaaatagatatatttcccttaatacttgtacattcaatcaattaaaagttaa-aaattaa 44151563  T
Q  704 atgcaat 710  Q
    || ||||    
T  44151564 attcaat 44151570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 602 - 687
Target Start/End: Complemental strand, 5559746 - 5559661
Alignment:
Q  602 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaatta 687  Q
    ||||||||||||||||   |||||| |||||||||||||  || ||||||||||| |   |||| ||||||||||| || ||||||    
T  5559746 gtcatgttaacttgtgctctaagggcacatgttaagcaacacagaaatagaaatagtctcttaaaatttgtgcatttaattaatta 5559661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 603 - 640
Target Start/End: Complemental strand, 36528514 - 36528477
Alignment:
Q  603 tcatgttaacttgtgtcataagggtacatgttaagcaa 640  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  36528514 tcatgttaacttgtgtccttagggtacatgttaagcaa 36528477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 602 - 695
Target Start/End: Complemental strand, 10655516 - 10655423
Alignment:
Q  602 gtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaa 695  Q
    |||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  10655516 gtcatgctaacttgtgtcctaagagtacatgttaagcaatccaaaaatagaaatatttccttaatacttgtgcattcaattaattaaaagttaa 10655423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 608 - 704
Target Start/End: Original strand, 5683387 - 5683483
Alignment:
Q  608 ttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaa 704  Q
    ||||||| |||| ||||||||||| |||||||| | ||| |||||||||||   ||||||||| |||||| || |||||||||||||| | ||||||    
T  5683387 ttaacttatgtcttaagggtacatattaagcaatctaaagatagaaatattctcttaatatttatgcatttaattaattaaaagttaaaatattaaa 5683483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 600 - 705
Target Start/End: Complemental strand, 12289170 - 12289065
Alignment:
Q  600 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatt-tcattaatatttgtgcattcaactaattaaaagttaataa 698  Q
    ||||||| |||||||||| | |||||| ||||||||||||| |||||| |||||||||| || | ||| |||||| |||||| |||| |||||||||  |    
T  12289170 gggtcatattaacttgtgccctaagggcacatgttaagcaatccaaaagtagaaatattctcttgaat-tttgtgtattcaattaatcaaaagttaaaga 12289072  T
Q  699 attaaat 705  Q
    |||||||    
T  12289071 attaaat 12289065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 599 - 693
Target Start/End: Complemental strand, 29429777 - 29429683
Alignment:
Q  599 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagtt 693  Q
    ||||||||||||||||||| | | |||| ||||||||||||| |||||| |||||||  ||  ||||  |||||||||| || ||||||||||||    
T  29429777 tgggtcatgttaacttgtgcccttagggcacatgttaagcaacccaaaagtagaaattgtttcttaaattttgtgcatttaattaattaaaagtt 29429683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 705
Target Start/End: Complemental strand, 141478 - 141372
Alignment:
Q  599 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatt-tcattaatatttgtgcattcaactaattaaaagttaata 697  Q
    |||||||||||||||||||   |||||   |||||||||||| || ||| |||||||||| || | ||| ||||||||||||| |||| |||||||||      
T  141478 tgggtcatgttaacttgtgctctaaggacgcatgttaagcaatcccaaagtagaaatattctcttgaat-tttgtgcattcaattaatcaaaagttaaag 141380  T
Q  698 aattaaat 705  Q
    ||||||||    
T  141379 aattaaat 141372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 599 - 637
Target Start/End: Original strand, 33741597 - 33741635
Alignment:
Q  599 tgggtcatgttaacttgtgtcataagggtacatgttaag 637  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  33741597 tgggtcatgttaacttgtgtcataagggaacaagttaag 33741635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 705
Target Start/End: Complemental strand, 12199365 - 12199290
Alignment:
Q  628 acatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaattaaat 705  Q
    |||||||||||||   |||| || ||||||||  |||| |||||||||||||| |||||||||||||| |||||||||    
T  12199365 acatgttaagcaatttaaaattaaaaatatttt-ttaaaatttgtgcattcaattaattaaaagttaa-aaattaaat 12199290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 600 - 693
Target Start/End: Original strand, 14512841 - 14512934
Alignment:
Q  600 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagtt 693  Q
    ||||| || ||||||||||   || ||||||  |||||||| | || |||||||||||||| |||||| || |||||||||  |||||||||||    
T  14512841 gggtcctgctaacttgtgtttgaaaggtacaaattaagcaatcaaataatagaaatatttccttaatacttatgcattcaatcaattaaaagtt 14512934  T

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Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 599 - 745
Target Start/End: Complemental strand, 22531018 - 22530872
Alignment:
Q  599 tgggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataa 698  Q
    |||||||||||||||| |||| ||||   ||||||||||||| ||||||||  ||||||||||| |||| || || ||| || |||||||||||||| ||    
T  22531018 tgggtcatgttaacttttgtcctaagaacacatgttaagcaatccaaaaatgaaaatatttcatcaatacttatgaattaaattaattaaaagttaaaaa 22530919  T
Q  699 attaaatgcaatacgcgaattccaacaaaaagtttctatatttaact 745  Q
    ||||||| |||| | | | ||| ||||||||||||||| ||||||||    
T  22530918 attaaattcaatgcacaagttcgaacaaaaagtttctacatttaact 22530872  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 601 - 703
Target Start/End: Complemental strand, 21970957 - 21970855
Alignment:
Q  601 ggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaataaat 700  Q
    ||||||| ||||||||| | ||| || |||| |||||||| | ||||||| ||||||||| |||| |||||||||||||| |||||||||||||| ||||    
T  21970957 ggtcatgctaacttgtgccctaaaggcacatattaagcaatcaaaaaataaaaatatttctttaagatttgtgcattcaattaattaaaagttaaaaaat 21970858  T
Q  701 taa 703  Q
    |||    
T  21970857 taa 21970855  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 600 - 658
Target Start/End: Original strand, 5456531 - 5456589
Alignment:
Q  600 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatt 658  Q
    |||||||||||||||||||||||| || | ||||||||||| | |||||||||||||||    
T  5456531 gggtcatgttaacttgtgtcataaaggcaaatgttaagcaaccaaaaaatagaaatatt 5456589  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 633 - 695
Target Start/End: Complemental strand, 533436 - 533374
Alignment:
Q  633 ttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaagttaa 695  Q
    |||||||| | |||||||||||| |||  |||| ||||||| |||||| ||||||||||||||    
T  533436 ttaagcaacctaaaaatagaaatgtttttttaaaatttgtgtattcaattaattaaaagttaa 533374  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 600 - 690
Target Start/End: Original strand, 7509633 - 7509723
Alignment:
Q  600 gggtcatgttaacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcattaatatttgtgcattcaactaattaaaa 690  Q
    |||||||| ||||||||| | |||||| |||||||||| || |||||| |||||| || |  ||||  ||||||||||||| |||| ||||    
T  7509633 gggtcatgctaacttgtgccctaagggcacatgttaagaaacccaaaagtagaaacatgttcttaaattttgtgcattcaattaatcaaaa 7509723  T

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Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 609 - 741
Target Start/End: Original strand, 508803 - 508935
Alignment:
Q  609 taacttgtgtcataagggtacatgttaagcaaaccaaaaatagaaatatttcat-taatatttgtgcattcaactaattaaaagttaataaattaaatgc 707  Q
    |||||||| |||||| |  | ||||||| ||| | ||||||||||||||| ||| ||| ||||||||||| || |||  ||||||||| |||||||||      
T  508803 taacttgtttcataacgacaaatgttaaacaatctaaaaatagaaatatt-catataagatttgtgcattgaattaagcaaaagttaaaaaattaaattt 508901  T
Q  708 aatacgcgaattccaacaaaaagtttctatattt 741  Q
    ||||   |||||||||||||||||||||| ||||    
T  508902 aatatctgaattccaacaaaaagtttctacattt 508935  T

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Target: scaffold1372 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 662
Target Start/End: Complemental strand, 136 - 97
Alignment:
Q  623 agggtacatgttaagcaaaccaaaaatagaaatatttcat 662  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  136 agggtacatgttaaggaatccaaaaatagaaatatttcat 97  T

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Target: scaffold1308 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1308
Description:

Target: scaffold1308; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 662
Target Start/End: Complemental strand, 1442 - 1403
Alignment:
Q  623 agggtacatgttaagcaaaccaaaaatagaaatatttcat 662  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  1442 agggtacatgttaaggaatccaaaaatagaaatatttcat 1403  T

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