View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885-Insertion-3 (Length: 949)
Name: NF2885-Insertion-3
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 509
Target Start/End: Original strand, 49060540 - 49061037
Alignment:
| Q |
7 |
agtttgttgttctcccaatgaagaaaatgacaaaacatcaggcaccactgaaacttcgagtccattgggtgctgtcaggaatgccctataagtagatgtt |
106 |
Q |
| |
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| T |
49060540 |
agtttgttgttctcccaatgaagaaaatgacaaaacatcaggcaccgatgaaacatcgagttcattgggtgctgtcaggaatgctctatatgtaaatgtc |
49060639 |
T |
|
| Q |
107 |
ggtgagccaacatttgtgacca---ttcttttaaaactcctacttatgtggctttgtgggtgtggtgcttttagagcaaatgatggataatttaaatccc |
203 |
Q |
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| T |
49060640 |
ggtgagccaacatttgtgacgacggttcttttaaaactcccacttatgtggttatttgggtgcggtgcttttagagtgaatgatggataatttaaatcct |
49060739 |
T |
|
| Q |
204 |
ttgttgttgagtttgttgtgttggagcagctgatgtcgtctccactgattagttgcagaattattttgttgtaccccagtccacacaaaaatattatgta |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||| | |||||| |
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| T |
49060740 |
ttgttgttgagtttgttgtgttggagcagctgatgtcgtctccactgatttgttgcataattattttgtcgtagtccagtccacacaaaca---tatgta |
49060836 |
T |
|
| Q |
304 |
atccatttcacttgcttcgtatatcaagccagggttcaaagcttttagggggttaatttgacctg-ctccgtaagcaa----actcagcatcattgttat |
398 |
Q |
| |
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||||||||| |||||||| ||||| ||| ||||||||| | ||||| |||||||||| | |||||||||| ||| |||||| || |||| |
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| T |
49060837 |
atccatttcgcttgcttcatatattaagtcagggttca--------acggggtcgatttgacctgcccccgtaagcaaagtcacttagcatcgttattat |
49060928 |
T |
|
| Q |
399 |
ttattggactcaactgtttagctgcaacaaaaggaatacacagtgtttgtttatattagcttaaaccatacaataagtaaagtataatcacctaaaatga |
498 |
Q |
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| T |
49060929 |
ttatcggactcaacaaattagctgcaatataaggaatgcactatgtttgcttatattaggttaaacctt--gataagtaaactataataagctcagatca |
49061026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 594 - 848
Target Start/End: Original strand, 49061250 - 49061508
Alignment:
| Q |
594 |
agttgtcattaaagcagagcggatagcagcaggtgaccatgta----ggttgaaatgacttg-atgtagcctgctgcaccagaaacatgtggacatgcca |
688 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| ||||||||| ||||||||| ||||| ||||| |||||||||||||| ||||||||||||| || |
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| T |
49061250 |
agttgtcattagagcagaacggatagcagcaggcgaccatgtatgtaggttgaaattacttggatgta-cctgctgcaccagacacatgtggacatgtca |
49061348 |
T |
|
| Q |
689 |
tcgatgttccagacactatgttgaactctagttttctagaatcgccttcaacttcagaaggaggggacactggagaccaacttgctattgtgtcaactcc |
788 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| | | || ||||||||||||| |||| |||| ||| | |
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| T |
49061349 |
tcaatgttccagacactatgttgaactctagttttctagagtcaccgtcaacttcagaaggagagaaaaccggagaccaacttgttattatgtctacttc |
49061448 |
T |
|
| Q |
789 |
aggagcaatcaaatccggctacaacattaaacaaatataaaaaggttaacaaaaaattgt |
848 |
Q |
| |
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||||||||| |||||||||| |||||||||||||| | ||||||||||||| |||||||| |
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| T |
49061449 |
aggagcaattaaatccggctccaacattaaacaaaaacaaaaaggttaacataaaattgt |
49061508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 52496148 - 52496031
Alignment:
| Q |
310 |
ttcacttgcttcgtatatcaagccagggttcaaagcttttagggggttaatttgacctgctccgtaagcaaactcagcatcattgttatttattggactc |
409 |
Q |
| |
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|||| |||| |||||||| || ||||| ||||| || |||| || || ||| ||||| ||||| |||||||| |||||| ||| ||||| | ||||| | |
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| T |
52496148 |
ttcatttgcctcgtatattaaaccaggattcaacgcctttaaggagtcaatctgaccggctccataagcaaattcagcaccatggttatcttttggagac |
52496049 |
T |
|
| Q |
410 |
aactgtttagctgcaaca |
427 |
Q |
| |
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| T |
52496048 |
atttgtttagctgcaaca |
52496031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 858 - 945
Target Start/End: Original strand, 34710759 - 34710846
Alignment:
| Q |
858 |
acatatgtgtttaatttaatcaatcatggaatggaaaacaaaccttgagaatatcaagtgtaactatgctaggaccccttcctgaaaa |
945 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
34710759 |
acatatgtgtttaatttaatcaatcatggaaaggaaaacaaaccttgagaatatcaggtgtaactatgctaggaccccttgctgaaaa |
34710846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 123 - 403
Target Start/End: Original strand, 29433695 - 29433979
Alignment:
| Q |
123 |
tgaccattcttttaaaactcctacttatgtggctttgtggg-tgtggtgcttttagagcaaatgatggataatttaaatcccttgttgttgagtttgttg |
221 |
Q |
| |
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|||| |||||||||||||||| ||||||||| ||| | || || |||||||||| |||||||| | ||||||| ||||| ||||||||| |||| || |
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| T |
29433695 |
tgacgattcttttaaaactcccacttatgtgttttttttggatgcggtgcttttaaagcaaatggggaataattttaatccattgttgttgtatttgctg |
29433794 |
T |
|
| Q |
222 |
tgttggagcagctgatgtcgtctccactgattagttgcagaattattttgttgtaccccagtccacacaaaaatattatgtaatccatttca---cttgc |
318 |
Q |
| |
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| |||||| || ||||||| || || || |||||||||| ||||||||||||||| || ||||||| ||||| |||||| ||||| | ||| || || |
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| T |
29433795 |
tcttggagtagttgatgtcatccccgctaattagttgcaaaattattttgttgtagccttgtccacataaaaacattatgcaatccctatcacagctggc |
29433894 |
T |
|
| Q |
319 |
ttcgtatatcaagccagggttcaaagcttttagggggttaatttgacctgctccgtaagcaaactcagcatcattgttatttatt |
403 |
Q |
| |
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| T |
29433895 |
atcatatattaagccaaggttaagaactttaagatggtcaatttaacttgctccatgagcaaattctgcatcattattatttatt |
29433979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 599 - 715
Target Start/End: Original strand, 29434893 - 29435009
Alignment:
| Q |
599 |
tcattaaagcagagcggatagcagcaggtgaccatgtaggttgaaatgacttgatgtagcctgctgcaccagaaacatgtggacatgccatcgatgttcc |
698 |
Q |
| |
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|||| |||||| | |||||||||| | |||||||| | ||||||||||||||||| || | || ||||||||| ||||||||||||||||| ||| |||| |
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| T |
29434893 |
tcataaaagcataacggatagcagtatgtgaccattttggttgaaatgacttgatataccttgttgcaccagacacatgtggacatgccattgatattcc |
29434992 |
T |
|
| Q |
699 |
agacactatgttgaact |
715 |
Q |
| |
|
|||| ||||||||||| |
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| T |
29434993 |
tgacattatgttgaact |
29435009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 535 - 577
Target Start/End: Original strand, 29434854 - 29434896
Alignment:
| Q |
535 |
tatttatgcatgaatatattgatggaaatgtgacactactcat |
577 |
Q |
| |
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| T |
29434854 |
tatttatgcatgaatatattgatggaaatatgacactactcat |
29434896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 590 - 823
Target Start/End: Original strand, 27970831 - 27971064
Alignment:
| Q |
590 |
taccagttgtcattaaagcagagcggatagcagcaggtgaccatgtaggttgaaatgacttgatgtagcctgctgcaccagaaacatgtggacatgccat |
689 |
Q |
| |
|
|||| |||||||||| ||| || |||| ||| ||||||||||||||||| |||||||| || | ||| |||||||||| || |||||||| || | ||| |
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|
| T |
27970831 |
tacctgttgtcattagagctgaacggagagctgcaggtgaccatgtaggatgaaatgatttaaggtatgctgctgcacctgacacatgtgggcaggacat |
27970930 |
T |
|
| Q |
690 |
cgatgttccagacactatgttgaactctagttttctagaatcgccttcaacttcagaaggaggggacactggagaccaacttgctattgtgtcaactcca |
789 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||| || || | ||||||| ||| || || | |||||||||||| |||| |||||| |
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|
| T |
27970931 |
tgatgttccagacataatgttgaactccaactttctattttcaccaagattttcagaaataggagatcttgcgggccaacttgctataatgtctactcca |
27971030 |
T |
|
| Q |
790 |
ggagcaatcaaatccggctacaacattaaacaaa |
823 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| |
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|
| T |
27971031 |
ggcgcaattaaatccggctacaacattaaacaaa |
27971064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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