View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885-Insertion-4 (Length: 937)
Name: NF2885-Insertion-4
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 8 - 931
Target Start/End: Complemental strand, 13673736 - 13672809
Alignment:
| Q |
8 |
gttcatatcttgtcacactcaaattaaattaaatagtaaataaacttcgtcagaacattgcaacctattgcattcacctagaagctataatataaaaatc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13673736 |
gttcatatcttgtcacactcaaattaaattaaatagtaaataaacttcgtcagaacattgcaacctattgcattcacctagaagctataatataaaaatc |
13673637 |
T |
|
| Q |
108 |
taagtactgcttacccaaatcacaagactttgcttactatcggaatcaactgcacgacgacctgttatgagttcgagtagtaaaacaccgaatgcgaata |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13673636 |
taagtactgcttacccaaatcacaagactttgcttactatcggaatcaactgcacgacgacctgttatgagttcgagtagtaaaacgccgaatgcgaata |
13673537 |
T |
|
| Q |
208 |
catctgtcttctcatccacaacaccatgcataaagtactctggagccaaatacctacaaacagacattgatacatccaatgtcttagaaaatggttataa |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13673536 |
catctgtcttctcatccacaacaccatgcataaagtactctggagccaaatacctacaaacagacattgatacatccaatgtcttagaaaatggttataa |
13673437 |
T |
|
| Q |
308 |
tgagnnnnnnn-tacacaaaagtaaaagtagatgcaatactaacccaaatgtgccttctataggaaaaacaacgtggtgtgcccaattatttggaagcca |
406 |
Q |
| |
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|||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13673436 |
tgagaaaaaaaatatactagagtaaaagtagatgcaatactaacccaaatgtgccttctataggaaaaacaacgtggtgtgcccaattatttggaagcca |
13673337 |
T |
|
| Q |
407 |
ctttgccagtccaaaatctgatatctgaagtttgatgcataagaaaattagaaatgtatatcatactaaggttctatagatacagttaataactaacatt |
506 |
Q |
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| T |
13673336 |
ctttgccagtccaaaatctgatatctgaagtttgatgcataagaaaattagaaatgtatatcatactaaggttctatagatacagttaataactaacatt |
13673237 |
T |
|
| Q |
507 |
tgtcattnnnnnnnnnnnnnnn--ctaagg-tgctactaaaagtacctcggcttcataattatcattgagtaatatgtttgaggctttgatgtccctgtg |
603 |
Q |
| |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13673236 |
tgtcattaaaaaaaaaaaaaaaaactaagggtgctactaaaagtacctcggcttcataattatcattgagtaatatgtttgaggctttgatatccctgtg |
13673137 |
T |
|
| Q |
604 |
aatgattcgtctgggacaatcttcatgaagataatgcaacccctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacct |
703 |
Q |
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| T |
13673136 |
aatgattcgtctgggacaatcttcatggagataatgcaacccctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacct |
13673037 |
T |
|
| Q |
704 |
aacaggttgaacataattgtgttacctatatcaatgctaatataaaataacaagggatagaaaatggagaagtaagatggaagcagcgctgcgcaccaaa |
803 |
Q |
| |
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| T |
13673036 |
aacaggttgaatataattgtgttacctatatcaatgctaatataaaataacaagggatagaaaatggagaagtaagatggaagcagcgctgcgcaccaaa |
13672937 |
T |
|
| Q |
804 |
taacaaagaagaaagacttccatatggtgctaattgtaggacaaagtagaggccgcggtcgataccaaacccgac-aggcgtgtagcgttcgggtgatta |
902 |
Q |
| |
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| T |
13672936 |
taacaaagaagaaagacttccatatggtgctaattgtaggacaaagtagaggccgcggtcgataccaaacccaacaaggcgtgtagcgttcgggtgatta |
13672837 |
T |
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| Q |
903 |
acgtgtgcaatgatttccaagctctgtta |
931 |
Q |
| |
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||||||||||||| ||||||||||||||| |
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| T |
13672836 |
acgtgtgcaatga-ttccaagctctgtta |
13672809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 5e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 117 - 262
Target Start/End: Complemental strand, 28532605 - 28532460
Alignment:
| Q |
117 |
cttacccaaatcacaagactttgcttactatcggaatcaactgcacgacgacctgttatgagttcgagtagtaaaacaccgaatgcgaatacatctgtct |
216 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||| |||||||||||||| | |||||| |||| || || || ||||| || ||||| |||| |
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| T |
28532605 |
cttacccaaatcacaagactttgcttgctatttgaatcaaccgcacgacgacctgtcaagagttcaagtaacaataccccaaatgcaaaaacatcagtct |
28532506 |
T |
|
| Q |
217 |
tctcatccacaacaccatgcataaagtactctggagccaaatacct |
262 |
Q |
| |
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| T |
28532505 |
tctcatccacaagtccatgcatgaaatactctggagccaaatacct |
28532460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 546 - 703
Target Start/End: Complemental strand, 28532201 - 28532044
Alignment:
| Q |
546 |
gtacctcggcttcataattatcattgagtaatatgtttgaggctttgatgtccctgtgaatgattcgtctgggacaatcttcatgaagataatgcaaccc |
645 |
Q |
| |
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| T |
28532201 |
gtacctctgcttcatcatcattgttgagtaatatgtttgaggctttgatgtctctgtgaatgattcttcttggacaatcttgatggagatattgcaaacc |
28532102 |
T |
|
| Q |
646 |
ctcggctactccgataaccaccttgtaccttgtcttccactctaagcattcagaacct |
703 |
Q |
| |
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| |||||| || | | |||||| ||||| | |||||| | || |||||||||||| |
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| T |
28532101 |
tttggctaccccaactgctaccttgaaccttatattccacgccaaacattcagaacct |
28532044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 348 - 438
Target Start/End: Complemental strand, 28532370 - 28532280
Alignment:
| Q |
348 |
aacccaaatgtgccttctataggaaaaacaacgtggtgtgcccaattatttggaagccactttgccagtccaaaatctgatatctgaagtt |
438 |
Q |
| |
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||||| |||||||||||||| || || ||||| ||||| ||||| |||| ||||||||||| || | |||||||||||| ||||| |||| |
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| T |
28532370 |
aacccgaatgtgccttctattgggaatacaacatggtgcgcccatttatccggaagccacttagctaatccaaaatctgaaatctgcagtt |
28532280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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