View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2885-Insertion-6 (Length: 859)
Name: NF2885-Insertion-6
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-6 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 6 - 646
Target Start/End: Complemental strand, 35491061 - 35490427
Alignment:
| Q |
6 |
caaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactgactttaccagcttttggtccatgaagccaaagcc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35491061 |
caaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactgactttaccagcttttggtccatgaagccaaagcc |
35490962 |
T |
|
| Q |
106 |
gaagaattctgcaatttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacgccattaggaaaagcaaggcctcttaataagacctt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35490961 |
gaagaattctgcaatttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacaccattaggaaaagcaaggcctcttaataagacctt |
35490862 |
T |
|
| Q |
206 |
cacttctttggttgacttatcatatttcattaacctcccagtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatata |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
35490861 |
cacttctttggttgacttatcatatttcattaacctcccagtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagcgagcaatata |
35490762 |
T |
|
| Q |
306 |
taaatcattctgttactattttcttaagaaaccaaattagctcaccgaaatttgcaccactcgaagaatcgaatctcatactttgatattctctaatatc |
405 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35490761 |
taaatcattttgttactattttcttaagaaacaaaattagctcaccgaaatttgcaccactcgaagaatcgaatctcatattttgatattctctaatatc |
35490662 |
T |
|
| Q |
406 |
ctaaaccaacaccacaaggccaactcaaagaggttccatcactatatttttaaatggaaatcatcaatacaacgaaatcaaaatcacgagattgtcccga |
505 |
Q |
| |
|
| |||| |||| |||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
|
|
| T |
35490661 |
ccaaac--------caagaccaactcaaagaggttccattactatatttttaaatggaaatgattaatacaacgaaatcaaaatcacgagattgtccgga |
35490570 |
T |
|
| Q |
506 |
aggannnnnnngtcac--tatatttgaaatttgaccaaaactcttaccccacaactgcccgtgttttccggccatgagaagattgtaacggtgaatagta |
603 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
35490569 |
aggatttttttgtcactatatatttgaaatttgaccaaaactcttaccccacaactgcccatgttttccggccatgagaagattgtcatggtgaacagta |
35490470 |
T |
|
| Q |
604 |
attcgggatgcattcgctataaaaacctttgcggtaaataaca |
646 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
35490469 |
attcaggatgcattcgctataaaaaccttcgcgttaaataaca |
35490427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 35503882 - 35503590
Alignment:
| Q |
20 |
tgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactgactttaccagcttttggtccatgaagccaaagccgaagaattctgcaa |
119 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||| || |||||||| ||||| ||||| ||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
35503882 |
tgaatttctccttacattgtctggaaagcctggaagaacagcaaaagtatcgacttggccagcatttggtccacgaagccaaagcctcagaatcttgcaa |
35503783 |
T |
|
| Q |
120 |
tttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacgccattaggaaaagcaaggcctcttaataagaccttcacttctttggttg |
219 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
35503782 |
gtcgaagtttcagctaccagaagaaatgaaccatctttgcttaaagcaacaccattgggaaaagcaaggccacttaataagactttcacttcttttgttg |
35503683 |
T |
|
| Q |
220 |
acttatcatatttcattaacctcccagtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatatataaatca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||| ||| || |||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
35503682 |
acttatcatatttcattaacctcccagtcttgtctccactaagaagtacaagcataaattgcctgtaaataaaagtaaccaacatataaatca |
35503590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 35512514 - 35512222
Alignment:
| Q |
20 |
tgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactgactttaccagcttttggtccatgaagccaaagccgaagaattctgcaa |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||| || || ||| | || ||||||| ||||||||||| ||||| |||| | |
|
|
| T |
35512514 |
tgaatttctccttatattgtcgggaaaacctggaagaacagcaaaagtatcgatttggccaacattaggtccattaagccaaagcctcagaatcctgcta |
35512415 |
T |
|
| Q |
120 |
tttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacgccattaggaaaagcaaggcctcttaataagaccttcacttctttggttg |
219 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||| |||||||| | | |
|
|
| T |
35512414 |
atcgaggtttcggctaccagaagaaatgaaccatctttgcttaaagcaacaccattgggaaaaaaaaggccacttaataagacctttacttctttactcg |
35512315 |
T |
|
| Q |
220 |
acttatcatatttcattaacctcccagtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatatataaatca |
312 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| ||||||| | || ||| ||| ||||||| | | |||||||||||| ||||| |||| |
|
|
| T |
35512314 |
acttatcgtatttcattaaccgtccagtcttgtctccactaagagttacaagcatatgttgcctgcagacaaaagtgaccaacatatagatca |
35512222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 224 - 327
Target Start/End: Complemental strand, 35497346 - 35497243
Alignment:
| Q |
224 |
atcatatttcattaacctcccagtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatatataaatcattctgttacta |
323 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||| |||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
35497346 |
atcatatttcattaaccttccagtcttgtctccactaacaaataaaagcgtatattgcctgcaaataaaagtgaccaacatatagatcattccattacta |
35497247 |
T |
|
| Q |
324 |
tttt |
327 |
Q |
| |
|
|||| |
|
|
| T |
35497246 |
tttt |
35497243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 668 - 859
Target Start/End: Original strand, 30851228 - 30851427
Alignment:
| Q |
668 |
agtgctaggtggtgcgaatgatttttcgcggaaacggcacgaccgtgtgattga-------atgcacaatccaac--acttgtgtgctaaaacattcttg |
758 |
Q |
| |
|
|||||||| ||||||||| ||||||||| ||| ||||||||||||| ||||| ||||| |||||||| || ||||| |||| |||||||| |
|
|
| T |
30851228 |
agtgctagacggtgcgaattgtttttcgcgtaaaaggcacgaccgtgtaattgattattgaatgcataatccaaccaacacgtgtgttaaagcattcttg |
30851327 |
T |
|
| Q |
759 |
attaaaaaattatattcaaaaccgccaaaaatatttttcatgcttgttgcatcttatctcttcgttgacttcatattcaaagtaaaaccaaaccccaatt |
858 |
Q |
| |
|
||||||||||||| |||||||||| |||||| | |||| ||||||||||| |||||| || ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
30851328 |
attaaaaaattatgttcaaaaccgtcaaaaa-aaatttcgcgcttgttgcattttatcttttgcttgacagcatattcaaagtaaaaccaaactccaatt |
30851426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 6 - 314
Target Start/End: Complemental strand, 40161568 - 40161260
Alignment:
| Q |
6 |
caaaactgaccatatgaatttctccttatattgtcgggaaaacctggaagatcaacaaaagtactgactttaccagcttttggtccatgaagccaaagcc |
105 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| ||| ||||||||||| | |||||||| |||||| |||||| || || |||||||||||||| | |
|
|
| T |
40161568 |
caaaactgcccatctgaatttctccttatattgtccggataacctggaagaacggcaaaagtattgacttgaccagcattagggccatgaagccaaagtc |
40161469 |
T |
|
| Q |
106 |
gaagaattctgcaatttgaggtttcagctaccagaagaaatgaaccatctttgcttaaagcaacgccattaggaaaagcaaggcctcttaataagacctt |
205 |
Q |
| |
|
||||||| | | || | ||||||||| |||| ||||| ||| |||| |||||||||||| ||| ||||||||| || |||||| |||||||||||||| |
|
|
| T |
40161468 |
gaagaatccggaaagtcgaggtttcacctactagaaggaataaaccgtctttgcttaaacaaacaccattaggataattaaggccacttaataagacctt |
40161369 |
T |
|
| Q |
206 |
cacttctttggttgacttatcatatttcattaacctcccagtcttgtcgccactaacaagtaaaagtgtatattgcctgaaaataaaagtgaccaatata |
305 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||| ||||| ||||| | ||||||||| | | |||||| ||| |||| ||||||| ||| |
|
|
| T |
40161368 |
cacttcttttgttgacttcacatatttcattaaccttccagttttgtctccacttagaagtaaaagcggaatttgcctacaaacaaaaatgaccaacata |
40161269 |
T |
|
| Q |
306 |
taaatcatt |
314 |
Q |
| |
|
|| |||||| |
|
|
| T |
40161268 |
tagatcatt |
40161260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 717 - 772
Target Start/End: Original strand, 41617236 - 41617291
Alignment:
| Q |
717 |
attgaatgcacaatccaacacttgtgtgctaaaacattcttgattaaaaaattata |
772 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41617236 |
attgaatgcataatccaacacttgtgtgctaaagcattcttgattaaaaaattata |
41617291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 662 - 859
Target Start/End: Original strand, 30464739 - 30464947
Alignment:
| Q |
662 |
tagagtagtgctaggtggtgcgaatgatttttcgcggaaacggcacgaccgtgtgattga-------atgcacaatccaac----acttgtgtgctaaaa |
750 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||| ||| ||||||||||||| ||||| ||||| |||||||| || |||||| |||| |
|
|
| T |
30464739 |
tagagcagtgctagacggtgcgaattgtttttcgcgtaaaaggcacgaccgtgtaattgattattgaatgcataatccaaccaacacgtgtgtgttaaag |
30464838 |
T |
|
| Q |
751 |
cattcttgattaaaaaattatattcaaaaccgccaaaaatatttttcatgcttgttgcatcttatctcttcgttgacttcatattcaaagtaaaaccaaa |
850 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||| || | ||| ||||||||||||||||||||| |
|
|
| T |
30464839 |
cattcttgattaaaaaattatattcaaaaccgtcaaaaaaaaatttcacgcttgttgcatcttatcttttgctcgacagcatattcaaagtaaaaccaaa |
30464938 |
T |
|
| Q |
851 |
ccccaatta |
859 |
Q |
| |
|
| ||||||| |
|
|
| T |
30464939 |
ctccaatta |
30464947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 731 - 859
Target Start/End: Original strand, 5644357 - 5644484
Alignment:
| Q |
731 |
ccaacacttgtgtgctaaaacattcttgattaaaaaattatattcaaaaccgccaaaaatatttttcatgcttgttgcatcttatctcttcgttgacttc |
830 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||| || ||||| | |
|
|
| T |
5644357 |
ccaacacgtgtgtgttaaagcattcttgattaaaaaattatattcaaaaccgtcaaaaa-aaatttcacgcttgttgcatcttatcttttgcttgacagc |
5644455 |
T |
|
| Q |
831 |
atattcaaagtaaaaccaaaccccaatta |
859 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
5644456 |
atattcaaagtaaaaccaaactccaatta |
5644484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 737 - 859
Target Start/End: Complemental strand, 51471773 - 51471645
Alignment:
| Q |
737 |
cttgtgtgctaaaacattcttgattaaaaaattatattcaaaaccgccaaaaatatttttcatgcttgttgcatc------ttatctcttcgttgacttc |
830 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || |||||| |||||| | |
|
|
| T |
51471773 |
cttgtgtgctaaaatattcttgattaaaaaattatattcaaaaccgtcaaaaatatttttcacgcttgttgcatctttatattgtctcttgcttgactgc |
51471674 |
T |
|
| Q |
831 |
atattcaaagtaaaaccaaaccccaatta |
859 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |
|
|
| T |
51471673 |
atattcaaagtaaacccaaactccaatta |
51471645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 660 - 747
Target Start/End: Complemental strand, 51471886 - 51471798
Alignment:
| Q |
660 |
aatagagtagtgctaggtggtgcgaatgattttt-cgcggaaacggcacgaccgtgtgattgaatgcacaatccaacacttgtgtgcta |
747 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| ||| |||||||| | || ||| ||||||||||||||||||||||||||| |
|
|
| T |
51471886 |
aatagagtagtgctaggtggtgcgaatggttttttcgcgtaaaaggcacgacggcgtaattaaatgcacaatccaacacttgtgtgcta |
51471798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 668 - 747
Target Start/End: Complemental strand, 48660931 - 48660852
Alignment:
| Q |
668 |
agtgctaggtggtgcgaatgatttttcgcggaaacggcacgaccgtgtgattgaatgcacaatccaacacttgtgtgcta |
747 |
Q |
| |
|
|||||||| |||||||||| |||||| || ||| ||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
48660931 |
agtgctagacggtgcgaatggtttttcccgtaaaacacacgaccgtgtaattgaatggacaatccaacactcttgtgcta |
48660852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 522 - 653
Target Start/End: Original strand, 7417766 - 7417898
Alignment:
| Q |
522 |
tatatttgaaatttgaccaaaactcttaccccacaactgcccgtgttttccggccatgagaagattgtaacggtgaatagt-aattcgggatgcattcgc |
620 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||| ||| | |||||||||||||| | |
|
|
| T |
7417766 |
tatatttgaaatttgaccaaaacttttaccccacaactgcccatgttttccggccatgagaacattgtattggtgaacagtgatttcgggatgcattcac |
7417865 |
T |
|
| Q |
621 |
tataaaaacctttgcggtaaataacactgctca |
653 |
Q |
| |
|
||| | |||| |||||||||| ||| ||||| |
|
|
| T |
7417866 |
gttaatatccttcgcggtaaatagcaccgctca |
7417898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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