View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885-Insertion-7 (Length: 828)
Name: NF2885-Insertion-7
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 5 - 474
Target Start/End: Complemental strand, 9422627 - 9422158
Alignment:
| Q |
5 |
acatcatgttattaagcgatgcttttttcaaaacatctcgaacacagaaaccgccatgcagatgacggtttctaaacaagtcaatcatctgggtcgcaat |
104 |
Q |
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| T |
9422627 |
acatcatgttattaagcgatgcttttttcaaaacatctcgaacacagaaaccgccatgcaaatgacggtttctgaacaagtcaatcatctgggtcgcaat |
9422528 |
T |
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| Q |
105 |
ttcacttctctgcggcccagatgatttgatttgcatgggtgagaaaagatgattagtagaaatttttctaagggttcgccaataaacmccgtaaggtgcg |
204 |
Q |
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| T |
9422527 |
ttcactcctctgcggcccagatgatttgatttgcatgggtgaaaaaagatgattagtagaaatttttctaagggttcgccaataaacaccgtaaggtgcg |
9422428 |
T |
|
| Q |
205 |
aatcctatggcacggttgaacataagagaataagctgattctttgataggrcgatcagcaaagacagagctatggagaatctctttagcaacatctggat |
304 |
Q |
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| T |
9422427 |
aatcctatggcacggttgaacataagagaataagctgattctttgataggacgatcagcaaagacagagctatggagaatttctttagcaacatctggat |
9422328 |
T |
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| Q |
305 |
tgcaagtaactatggctcttgtgtcaccaagactaaaagccatgagtcttgttgctttgcatgtttttgctgtggaagctatacggtggtgtgctagtga |
404 |
Q |
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| T |
9422327 |
tgcaagtaaccatggctcttgtgtcaccaagactaaaagccatgagtcttgttgctttgcatgtttttgctgtggaagctatacggtggtgtgctagtga |
9422228 |
T |
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| Q |
405 |
tgaagacataagattcatgcttccaaatagaggatacccttttggaccaggaatgaatattgaagaggaa |
474 |
Q |
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| T |
9422227 |
tgaagacataagattcatgcttccaaatagaggatacccttttggaccaggaatgaatattgaagaggaa |
9422158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 537 - 721
Target Start/End: Complemental strand, 9422101 - 9421917
Alignment:
| Q |
537 |
ggtggaatagttagaggaataatagtacttgccccaagcaggaccaccagggtgagaccaataaaagaaagtcatggttatccaaagtaaagccatgatc |
636 |
Q |
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| T |
9422101 |
ggtggaatagttagaggaataatagtacttgccccaagcaggaccaccagggtgagaccaataaaagaaagtcatggttatccaaagtaaagccatgatc |
9422002 |
T |
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| Q |
637 |
aaaagagagtaagcaatgttttcttgtgtgcatttggaagcaagagcaaaaatccagagggtatcaatgttggttgacatgtttc |
721 |
Q |
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| T |
9422001 |
aaaagagagtaagcaatgttttcttgtgtgcatttggaagcaagagcaaaaatccagaggttgtcaatgttggttgacatgtttc |
9421917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 788 - 828
Target Start/End: Complemental strand, 9421855 - 9421815
Alignment:
| Q |
788 |
tgtggtgaggtgagtaagtaagaggttggttgaggggaata |
828 |
Q |
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| T |
9421855 |
tgtggtgaggtgagtaagtaagaggttggttgaggggaata |
9421815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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