View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885-Insertion-8 (Length: 768)
Name: NF2885-Insertion-8
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 768
Target Start/End: Original strand, 3983371 - 3984128
Alignment:
| Q |
8 |
aaggtatcaatcgaaactttgatagttattagctggtatacttaaatgggctaaaaacatatttaaatttattataaacccggtttttcacaagtt-gaa |
106 |
Q |
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| T |
3983371 |
aaggtatcaatcgaaactttgatagttattagctggtatacttaaatgggctaaaaacatatttaaatttattataaacctggtttttctcaagttagaa |
3983470 |
T |
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| Q |
107 |
attattaatgaaggccaactccgttgttgagaagttgacacattgtggtgcaataactttcggaaaccaattcatccaaactttttattaggnnnnnnng |
206 |
Q |
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| T |
3983471 |
attattaatgaaggccgactccattgttgagaagttgatacattgtggtgcaataacttccggaaaccaactcatccaaactttttattagaaaaaaaag |
3983570 |
T |
|
| Q |
207 |
tagaatttaaacaatttnnnnnnntgttgagtttaagcaaccaatatgcaccctcctttctttaaagtagcaagctattccatttctctctacgaaaggt |
306 |
Q |
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| T |
3983571 |
tagaatttaaacaattttaaaaaatgttgagtttaagcaaccaatatgcaccctcctttctttaaagtagcaagctattccatttctctctacgaaagtt |
3983670 |
T |
|
| Q |
307 |
tgtagtctgaattcagtcaatacacactagatggaatgatcaatagcaatatcaataatcttaatcacaatgttaataaaatccaactgttcgaacgtga |
406 |
Q |
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| T |
3983671 |
tgtagtctgaattcagtcaatacacaatagatggaatgatcaatagcaatatcaataatcttaaccacagtgttaataaaatccaattgttcaaacgcga |
3983770 |
T |
|
| Q |
407 |
ataaattatattatcttcgcctttatatagaaaattatatagtaggcttcccgcgttgggcatatttcaagcgtgtggttgcttggttatgttaaacata |
506 |
Q |
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| T |
3983771 |
ataaattatattatcttcgcctttatatagaaaattatatagtaggcttcccgcattgggcatatttcaagcgtgcggttgcttggtgaggttaaacata |
3983870 |
T |
|
| Q |
507 |
gtaggttttgaggtctatagggatgttaaacatagtaggttt-tgatgttaaaccgagattgtggtatcccattga-nnnnnnngcaccattggatagtt |
604 |
Q |
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| T |
3983871 |
gtaggttttggggtctatagggatgttgcgtgcaataggtttgggatg-------gagattgtggtatcccattgattttttttgcaccgttggatagtt |
3983963 |
T |
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| Q |
605 |
gatattctcttgacatgttgatgtacaagtctttaattgtacttgggttgtttagtttttatttgca-ttggtactattgttttgtccttgtacggcttg |
703 |
Q |
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| T |
3983964 |
gatattcttttgacatgttgatgtacaagcctttaattgtacttgggttgtatagtttttatttgcatttggtactattgttttgtccttatacggcttg |
3984063 |
T |
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| Q |
704 |
agttatttttaatacgttttttaatagctatttcatttatgagacactgttgcatgtacaagcgg |
768 |
Q |
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| T |
3984064 |
agttatttttaatacgttatttaatagctattgcatttatgagacactgttgcatgtacaagcgg |
3984128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 235; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 355 - 766
Target Start/End: Complemental strand, 32971492 - 32971087
Alignment:
| Q |
355 |
atatcaataatcttaatcacaatgttaataaaatccaactgttcgaacgtgaataaattatattatcttcgcctttatatagaaaattatatagtaggct |
454 |
Q |
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| T |
32971492 |
atatcaataatcttaaccacagtgttaataaaatccaactgttcaaacgcgaataaattatattatcttcgcctttatatagaaaattatatagtaggct |
32971393 |
T |
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| Q |
455 |
tcccgcgttgggcatatttcaagcgtgtggttgcttggttatgttaaacatagtaggttttgaggtctatagggatgttaaacatagtaggttttg-atg |
553 |
Q |
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| T |
32971392 |
ttccgcattgggcatattttaagtgtgtagttgcttggtgaggttaaacatagtaggttttggggtctatagagatgttgcgtgcaataggtttgggatg |
32971293 |
T |
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| Q |
554 |
ttaaaccgagattgtggtatcccattgannnnnnn-gcaccattggatagttgatattctcttgacatgttgatgtacaagtctttaattgtacttgggt |
652 |
Q |
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| T |
32971292 |
-------gagattgtggtatcccattgattttttttgcaccgttggatagttgatattcttttgacatgttgatgtacaagcctttaattgtacttgggt |
32971200 |
T |
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| Q |
653 |
tgtttagtttttatttgcattggtactattgttttgtccttgtacggcttgagttatttttaatacgttttttaatagctatttcatttatgagacactg |
752 |
Q |
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| T |
32971199 |
tgtttagtttttatttgcattg-tactattgttttgtccttatacggcttgagttatttttaatacgttttttaatagttattgcatttatgagacactg |
32971101 |
T |
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| Q |
753 |
ttgcatgtacaagc |
766 |
Q |
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| T |
32971100 |
ttgcatgtacaagc |
32971087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 20181001 - 20180937
Alignment:
| Q |
357 |
atcaataatcttaatcacaatgttaataaaatccaactgttcgaacgtgaataaattatattatc |
421 |
Q |
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| T |
20181001 |
atcaataatcttaaccaccgtgataaaaaaatcccactgttcaaacgtgaataaattatattatc |
20180937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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