View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885-Insertion-9 (Length: 615)
Name: NF2885-Insertion-9
Description: NF2885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 383
Target Start/End: Original strand, 54957017 - 54957392
Alignment:
| Q |
8 |
gttaatacaataaatctgacnnnnnnncttcctgtttacatgttatgatatgcctaatgattacgaagatcctaactaatctaggaaacaaatcagatca |
107 |
Q |
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| T |
54957017 |
gttaatacaataaatctgactttttttcttcctgtttacatgttatgatatgcctaatgattacaaagatcctaactaatctaggaaacaaatcagatca |
54957116 |
T |
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| Q |
108 |
tctaggatagttttgaacagtctaagatgcaaaaaagatattgccatttatttctcagtttttcttacactaaagaaaaatgtatttctgaaagttatgt |
207 |
Q |
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| T |
54957117 |
tctaggatagttttgaacagtctaagatgcaaaaaagatattggcatttatttctcagtttttcttacactaaagaaaaatgtatttctgaaagttatgt |
54957216 |
T |
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| Q |
208 |
cttcaaatcaatttctacgggagtgaatctgtattttaccttatgcatagcatacagtcctcctggttagcttaattgatcaaaaggtggagtgatattc |
307 |
Q |
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| T |
54957217 |
cttcaaatcaatttctacgggagtgaatctgtattttaccttatgcatagcatacagtcctcctggttagcttaattgatcaaaaggtggagtgatattc |
54957316 |
T |
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| Q |
308 |
tttccaatgtttttccatacttagagttcatgttatattgggaacattattagtttttgaaaaatagatgaatgtt |
383 |
Q |
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| T |
54957317 |
tttccaatgttttttcatacctagagttcatgttatattgggaacattattagtttttgaaaaatagatgaatgtt |
54957392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 465 - 615
Target Start/End: Complemental strand, 55953704 - 55953554
Alignment:
| Q |
465 |
atgaatttcccattcccaaaatcattccctccaccataaccatcccaaaagaaaagttcagattcattcttttcaaacaaacaaagctgtgttacatgga |
564 |
Q |
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| T |
55953704 |
atgaatttcccattcccaaaatcattcactccaccataaccatcccaaaagaaaagttcagattcattcttttcaaacaagcaaagttgtgtcacacgga |
55953605 |
T |
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| Q |
565 |
gactcgattttatcataagcaattccattctttttaaaagaagagttcata |
615 |
Q |
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| T |
55953604 |
gactcgattttatcataagcaattccattctttttaaaagaagagttcata |
55953554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 465 - 615
Target Start/End: Complemental strand, 43277779 - 43277640
Alignment:
| Q |
465 |
atgaatttcccattcccaaaatcattccctccaccataaccatcccaaaagaaaagttcagattcattcttttcaaacaaacaaagctgtgttacatgga |
564 |
Q |
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| T |
43277779 |
atgaatttcccattcccaaaatcattcactccaccataacca-----------aagttcagattcattcttttcaaacgaacaaagttgtgtcacacgga |
43277691 |
T |
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| Q |
565 |
gactcgattttatcataagcaattccattctttttaaaagaagagttcata |
615 |
Q |
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| T |
43277690 |
gactcgattttatcataagcaattccattctctttaaaagaagagttcata |
43277640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 514
Target Start/End: Complemental strand, 4810083 - 4810037
Alignment:
| Q |
468 |
aatttcccattcccaaaatcattccctccaccataaccatcccaaaa |
514 |
Q |
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| T |
4810083 |
aatttcccattcccaaaatcattcactccatcgtaaccatcccaaaa |
4810037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 615
Target Start/End: Complemental strand, 4809998 - 4809948
Alignment:
| Q |
568 |
tcgattttatcataag---caattccattctttttaaaagaagagttcata |
615 |
Q |
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| T |
4809998 |
tcgattttatcataagaagcaattccattcttttcaaaagaagagttcata |
4809948 |
T |
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