View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885R-Insertion-10 (Length: 158)
Name: NF2885R-Insertion-10
Description: NF2885R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885R-Insertion-10 |
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| [»] chr2 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 7e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 7e-66
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 24540006 - 24539856
Alignment:
| Q |
8 |
acaatctccagtaagtgcctatgattgtgagtatctcatggaactctcaattggaactccaccaataaagatctatgccgaagcagacaccggcagtgac |
107 |
Q |
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| T |
24540006 |
acaatctcccgtaagtgcctatgattgtgagtatctcatggaactctccattggaactccgccaataaagatctatgctgaagcagacaccggcagtgac |
24539907 |
T |
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| Q |
108 |
cttgtatggttccaatgcattccttgcaccaaatgctacgaacaacaaaac |
158 |
Q |
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| T |
24539906 |
cttgtatggttccaatgcattccttgcaccaaatgctataaacaacaaaac |
24539856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 24547385 - 24547250
Alignment:
| Q |
18 |
gtaagtgcctatgattgtgagtatctcatggaactctcaattggaactccaccaataaagatctatgccgaagcagacaccggcagtgaccttgtatggt |
117 |
Q |
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| T |
24547385 |
gtaagtgtccatcattatgattatctcatggaactctcgatcggaactccaccggtaaagacctatgctcaagtagataccggtagtgaccttatatggc |
24547286 |
T |
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| Q |
118 |
tccaatgcattccttgcaccaaatgctacgaacaac |
153 |
Q |
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| T |
24547285 |
tccaatgcattccttgcactaactgctacaaacaac |
24547250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 15798508 - 15798359
Alignment:
| Q |
9 |
caatctccagtaagtgcctatgattgtgagtatctcatggaactctcaattggaactccaccaataaagatctatgccgaagcagacaccggcagtgacc |
108 |
Q |
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| T |
15798508 |
caatcccccgtaagtgccaatcattatgattatctcatggaactctcgatcggtactccaccggtaaagatctatgctcaagcagataccggtagtgacc |
15798409 |
T |
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| Q |
109 |
ttgtatggttccaatgcattccttgcaccaaatgctacgaacaacaaaac |
158 |
Q |
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| T |
15798408 |
ttatatggctccaatgcattccttgcactaactgttacaaacaactaaac |
15798359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 43059046 - 43058984
Alignment:
| Q |
96 |
accggcagtgaccttgtatggttccaatgcattccttgcaccaaatgctacgaacaacaaaac |
158 |
Q |
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| T |
43059046 |
accggtagtgaccttacatggttccaatgcattccttgcactaaatactacaaacaactaaac |
43058984 |
T |
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