View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2885R-Insertion-4 (Length: 522)
Name: NF2885R-Insertion-4
Description: NF2885R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2885R-Insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 379
Target Start/End: Original strand, 35491055 - 35491427
Alignment:
| Q |
9 |
agttttgggttgctttgtattcatcagctgtaaagctgagtgatgaaggagaaatattagaaaccttaaaagatttcgaaaggaagaccatgaagaacat |
108 |
Q |
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| T |
35491055 |
agttttgggttgctttgtattcatcagctgtaaagctgagtgatgaaggagaaatattagaaaccttagaagatttcgaaaggaagaccatgaagaacat |
35491154 |
T |
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| Q |
109 |
tagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatatattacgttag |
208 |
Q |
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| T |
35491155 |
tagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcagtatattacgttag |
35491254 |
T |
|
| Q |
209 |
tgtgtacatgt--catacaagggacaaatttatgtttttattagtatttatatgttcattttaaaatattgtatgaaatatattagtgtgtactgatgca |
306 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35491255 |
tgtgtacatgtcccatacaagggacaattttatgtttttattagtatttatatgttcattttaaagtattgtatgaaatatattagtgtgtactgatgca |
35491354 |
T |
|
| Q |
307 |
atgcaatatattattggcaattatatgatgaagatttcactaattttttgttttccataagcttatagtaatg |
379 |
Q |
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| T |
35491355 |
atgcaatatattattggcaattatatgatgaagatttcactaattttttgttttccataagcttataataatg |
35491427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 80 - 373
Target Start/End: Original strand, 35497344 - 35497652
Alignment:
| Q |
80 |
gatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttata |
179 |
Q |
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| T |
35497344 |
gatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttata |
35497443 |
T |
|
| Q |
180 |
gtttatgagcatgcaatatattacgttagtgtgtacatgt------catacaagggacaaatttatgtttttattagtatttatatg----ttcatttta |
269 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| ||| || ||||||| |||||||||| || |||||||||| || |||||| |
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| T |
35497444 |
gtttatgagcatgcaatatattataaaagtgtgtacatgtgccatccatgcacatgacaaatctatgtttttaatattatttatatgtttattaatttta |
35497543 |
T |
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| Q |
270 |
aaatattg------tatgaaatatattagtgtgtactgatgcaatgcaatatattattggcaattatatgatgaagatttcactaattttttgttttcca |
363 |
Q |
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|| ||||| ||||||||||| |||||| |||| |||| ||||||| || |||||||||||||||||||||||||| ||||||||||| |||| | |
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| T |
35497544 |
aagtattgtatgaatatgaaatatactagtgtctactaatgccatgcaat-tactattggcaattatatgatgaagattttactaattttttatttttcc |
35497642 |
T |
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| Q |
364 |
taagcttata |
373 |
Q |
| |
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|| ||||||| |
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| T |
35497643 |
tatgcttata |
35497652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 33 - 199
Target Start/End: Original strand, 35504028 - 35504194
Alignment:
| Q |
33 |
cagctgtaaagctgagtgatgaaggagaaatattagaaaccttaaaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatgg |
132 |
Q |
| |
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||||| ||||||||||||||||||| |||||||||||| | | |||||| ||| |||||||| ||||| ||| |||||| | |||||||||||||| |
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| T |
35504028 |
cagctataaagctgagtgatgaaggggaaatattagaagtcctggaagattgtgaagggaagaccttgaagttcatcagtgaaattgaagagaaagatgg |
35504127 |
T |
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| Q |
133 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatata |
199 |
Q |
| |
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|||||||||||| ||||| | ||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
35504128 |
aaaactttggatggcatcagtgttaatgccttatattggtgtttataatttatgagaatgcaatata |
35504194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 33 - 198
Target Start/End: Original strand, 35512660 - 35512825
Alignment:
| Q |
33 |
cagctgtaaagctgagtgatgaaggagaaatattagaaaccttaaaagatttcgaaaggaagaccatgaagaacattagtgaagtggaagagaaagatgg |
132 |
Q |
| |
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||||| ||||||||||||||||||| |||||| |||||| | ||||| ||| |||||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
35512660 |
cagctataaagctgagtgatgaaggggaaataatagaaagtctggaagatcgtgaagggaagaccttgaagttcatcagtgaagtggaagagaaagatgg |
35512759 |
T |
|
| Q |
133 |
aaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatgagcatgcaatat |
198 |
Q |
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|||||||||||| || || | ||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
35512760 |
aaaactttggatggcctctgtcttaatgccttatattggtgtttatagtttatgagaatgcaatat |
35512825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 40161652 - 40161731
Alignment:
| Q |
108 |
ttagtgaagtggaagagaaagatggaaaactttggattgcatcgatagtaacgccttatattggtgtttatagtttatga |
187 |
Q |
| |
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| T |
40161652 |
ttagtgaagcggatgagaaagatggtaaacttttgattggatcagtgttaatgccttatattggtatttatagtttatga |
40161731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 40161562 - 40161624
Alignment:
| Q |
9 |
agttttgggttgctttgtattcatcagctgtaaagctgagtgatgaaggagaaatattagaaa |
71 |
Q |
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||||||||||||||||| || ||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
40161562 |
agttttgggttgctttgcataatgcagctataaagttgagtgatgaaggggaaatattagaaa |
40161624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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