View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2885R-Insertion-5 (Length: 520)

Name: NF2885R-Insertion-5
Description: NF2885R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2885R-Insertion-5
NF2885R-Insertion-5
[»] chr5 (18 HSPs)
chr5 (163-515)||(18934060-18934412)
chr5 (163-515)||(4560156-4560508)
chr5 (227-515)||(18883388-18883676)
chr5 (163-503)||(18258978-18259319)
chr5 (321-503)||(34080736-34080918)
chr5 (194-368)||(239845-240019)
chr5 (179-368)||(14024994-14025183)
chr5 (306-465)||(42131343-42131502)
chr5 (311-503)||(22540229-22540421)
chr5 (164-368)||(32386547-32386752)
chr5 (236-387)||(32786038-32786189)
chr5 (212-367)||(41549939-41550094)
chr5 (219-288)||(16081680-16081749)
chr5 (344-387)||(1189121-1189164)
chr5 (238-309)||(42132750-42132821)
chr5 (170-208)||(18883718-18883756)
chr5 (209-250)||(7531130-7531171)
chr5 (209-250)||(26590189-26590230)
[»] chr3 (12 HSPs)
chr3 (163-515)||(54812088-54812440)
chr3 (163-515)||(46428563-46428915)
chr3 (163-515)||(42794493-42794845)
chr3 (170-515)||(43912099-43912444)
chr3 (163-503)||(54346754-54347095)
chr3 (311-503)||(27156155-27156347)
chr3 (216-367)||(25905871-25906022)
chr3 (312-368)||(37503148-37503204)
chr3 (202-381)||(43813088-43813266)
chr3 (174-244)||(36275940-36276009)
chr3 (210-250)||(44938282-44938322)
chr3 (219-287)||(46911790-46911858)
[»] chr1 (17 HSPs)
chr1 (163-515)||(22065041-22065393)
chr1 (177-503)||(23949717-23950044)
chr1 (164-503)||(5308661-5309001)
chr1 (238-515)||(2601190-2601466)
chr1 (170-503)||(23084758-23085090)
chr1 (163-472)||(42677241-42677551)
chr1 (174-307)||(11531450-11531583)
chr1 (311-501)||(50952555-50952745)
chr1 (179-367)||(6294076-6294264)
chr1 (163-503)||(34553712-34554052)
chr1 (179-290)||(38168197-38168308)
chr1 (163-368)||(16855004-16855210)
chr1 (311-385)||(8059849-8059923)
chr1 (242-364)||(12673188-12673310)
chr1 (312-367)||(39476120-39476175)
chr1 (202-368)||(28706051-28706216)
chr1 (163-235)||(50952404-50952477)
[»] chr2 (17 HSPs)
chr2 (163-515)||(17290036-17290388)
chr2 (163-503)||(13186907-13187247)
chr2 (215-385)||(26381158-26381328)
chr2 (163-423)||(40426006-40426267)
chr2 (163-448)||(6598993-6599280)
chr2 (311-503)||(7305068-7305260)
chr2 (163-367)||(24126257-24126462)
chr2 (179-368)||(42865976-42866165)
chr2 (311-477)||(37307282-37307448)
chr2 (163-366)||(11995575-11995779)
chr2 (178-252)||(40614906-40614981)
chr2 (312-367)||(40615032-40615087)
chr2 (163-233)||(7304957-7305027)
chr2 (163-208)||(9004749-9004794)
chr2 (318-386)||(6372673-6372741)
chr2 (215-288)||(981510-981583)
chr2 (319-379)||(24467731-24467791)
[»] chr8 (13 HSPs)
chr8 (163-515)||(44145712-44146063)
chr8 (170-515)||(38560465-38560810)
chr8 (165-503)||(1636017-1636356)
chr8 (163-368)||(45093500-45093706)
chr8 (311-503)||(26616714-26616904)
chr8 (164-368)||(33373257-33373461)
chr8 (178-368)||(42000334-42000525)
chr8 (213-382)||(9031486-9031655)
chr8 (311-503)||(456348-456540)
chr8 (163-368)||(35808261-35808468)
chr8 (318-378)||(1362962-1363022)
chr8 (220-364)||(40536263-40536407)
chr8 (215-248)||(20669984-20670017)
[»] chr7 (12 HSPs)
chr7 (163-514)||(24473456-24473807)
chr7 (163-429)||(24468593-24468859)
chr7 (170-501)||(48618955-48619287)
chr7 (163-503)||(8019584-8019924)
chr7 (176-367)||(46045967-46046158)
chr7 (163-368)||(8035770-8035976)
chr7 (179-368)||(38110533-38110722)
chr7 (163-368)||(5350053-5350257)
chr7 (210-493)||(29213615-29213899)
chr7 (170-252)||(5791309-5791392)
chr7 (219-287)||(3237829-3237897)
chr7 (238-287)||(45752642-45752691)
[»] chr4 (15 HSPs)
chr4 (163-515)||(47597430-47597782)
chr4 (163-402)||(4228291-4228530)
chr4 (224-515)||(43270694-43270982)
chr4 (163-503)||(34389644-34389985)
chr4 (313-503)||(36894406-36894596)
chr4 (179-368)||(1217218-1217407)
chr4 (163-368)||(44307583-44307789)
chr4 (163-368)||(28945211-28945416)
chr4 (179-368)||(1369493-1369682)
chr4 (318-386)||(11896048-11896116)
chr4 (194-250)||(861273-861329)
chr4 (210-250)||(24246286-24246326)
chr4 (163-252)||(36858649-36858740)
chr4 (215-288)||(15828312-15828385)
chr4 (210-250)||(36894303-36894343)
[»] chr6 (5 HSPs)
chr6 (163-515)||(1222820-1223154)
chr6 (9-106)||(897945-898042)
chr6 (104-147)||(898059-898102)
chr6 (210-250)||(20679026-20679066)
chr6 (265-367)||(6262249-6262351)
[»] scaffold0003 (1 HSPs)
scaffold0003 (254-508)||(355917-356172)
[»] scaffold0736 (1 HSPs)
scaffold0736 (318-387)||(6520-6589)


Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 163 - 515
Target Start/End: Complemental strand, 18934412 - 18934060
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934412 gtacaatagagggcaaagtccaagagaaaagaaactacgaaattaaccggacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 18934313  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934312 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 18934213  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934212 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 18934113  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  18934112 tgtcgatcaatatcttcgggtcactttccacaataagatgatcaaaatgctcc 18934060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 163 - 515
Target Start/End: Original strand, 4560156 - 4560508
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||    
T  4560156 gtacaaaagagggcaaatcccaagagaaaagaaactacgaaattaaccgaacatttctaggcatgtaagccccagaaatatcatcaaacatgagctttcg 4560255  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  4560256 aagctcagtaggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaa 4560355  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||    
T  4560356 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcatattcccattaaacttgaacttttcagaaatca 4560455  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4560456 tgtcgatcaatatcttcgagtcactttccacaataagatgatcaaaatgctcc 4560508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 227 - 515
Target Start/End: Complemental strand, 18883676 - 18883388
Alignment:
Q  227 gcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaatta 326  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  18883676 gcaagccctggaaatatcatcaaacatgagcttttgaagctcagtaggaggagtctccaaaataatcaaattcaaattattcacaaaaatgctaaaatta 18883577  T
Q  327 gcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaatag 426  Q
    |||||||||||||||  |||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||    
T  18883576 gcaagccaatcggcatatctatttccttcgcgccaagtatggttgatttgcacatgtcaatccattctcagtagcttcctgatacaatgaactaaaatag 18883477  T
Q  427 gcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    | | ||||||||||||||| |||| ||| |||||||||||||||||||||||  ||||| ||||||| |||||||||||||||||||||    
T  18883476 ggatattcccattaaacttaaacttgtccgaaatcatgtcgatcaatatctttgagtcattttccactataagatgatcaaaatgctcc 18883388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 163 - 503
Target Start/End: Original strand, 18258978 - 18259319
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactac-gaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatga-gcttt 260  Q
    |||||| ||||||||||||||||||||||| ||| |   |||  ||| ||||||||||||||||||||||||||||| | ||||||||| ||||  ||||    
T  18258978 gtacaagagagggcaaagcccaaaagaaaataaaatttagaagctaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaatgattcttt 18259077  T
Q  261 cgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcc 360  Q
     | | ||||  |||||||| |||||| |  |  ||||| |||||||     |||||||| |||||||| |||||||| |||||  |||||||||| ||||    
T  18259078 tg-acctcacaaggaggagactccaacactagaaaattaaaatgatctgtcgaaatgcttaaattagcgagccaatcagcactcatatttccttcgcgcc 18259176  T
Q  361 aagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaat 460  Q
    | |||||||||| ||| ||||  |||   ||  |||||||||||| ||| || | |||||||| | | | ||||||||| || ||| | |  ||||||||    
T  18259177 aggtatggttgagttgaacatttcaacttatcttcagcagcttccggatccggtaaactaaaacaagaatattcccattgaatttggaattatcagaaat 18259276  T
Q  461 catgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    |||||||||||| |||||  | ||||||||||| |||||||||    
T  18259277 catgtcgatcaaaatctttgaatcactttccactataagatga 18259319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 321 - 503
Target Start/End: Original strand, 34080736 - 34080918
Alignment:
Q  321 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaacta 420  Q
    |||||||||||||||||  ||||  | ||||||||||||||||||||||||| ||| |||| |||| ||||  |||||||||||  ||| || |||||||    
T  34080736 aaattagcaagccaatcaacactcatgtttccttcacgccaagtatggttgagttgaacattccaacccatcttcagcagcttctggatccggtgaacta 34080835  T
Q  421 aaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    ||| | | | |||| |||| |||||||| |  ||||||||||| || ||||| ||||| || ||||||||||| |||||||||    
T  34080836 aaacaagaatattcgcattgaacttgaatttatcagaaatcatatccatcaaaatctttaaatcactttccactataagatga 34080918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 194 - 368
Target Start/End: Original strand, 239845 - 240019
Alignment:
Q  194 aaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatc 293  Q
    |||||| |||||||| || || ||||||||||||||||| |||||||||||||||||||  ||  |  |||||||| ||||||||||||||| ||||       
T  239845 aaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctccagaatatga 239944  T
Q  294 aaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 368  Q
    ||||  | |  || ||  |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  239945 aaatctagaaaatccattgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 240019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 14025183 - 14024994
Alignment:
Q  179 agcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggagga 278  Q
    |||||||| ||||  |||||| |||||||| || || ||| |||||||||||||||||||||||||||||||||  ||  |  |||||||| ||||||||    
T  14025183 agcccaaaggaaagaaaactaagaaattaaacggacgttcttaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggagga 14025084  T
Q  279 gtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 368  Q
    ||||||| ||||   ||||  | |  || |   |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  14025083 gtctccagaatatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 14024994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 306 - 465
Target Start/End: Complemental strand, 42131502 - 42131343
Alignment:
Q  306 ttcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 405  Q
    |||||||||||| |||||| |||||| |||||| |||||||||||||||  | | ||| |||  |||||||||||||||||| |||| | |  |||||||    
T  42131502 ttcacagaaatgttaaaatgagcaagtcaatcgacacttctatttcctttccactaagcatgactgatttgcacatgccaattcatttttaatagcttcc 42131403  T
Q  406 tgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgt 465  Q
    | |||| ||||||||||||||  | ||| |||||||||  |||||  |||||||||||||    
T  42131402 taatacaatgaactaaaatagagatatttccattaaaccggaacttctcagaaatcatgt 42131343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 503
Target Start/End: Complemental strand, 22540421 - 22540229
Alignment:
Q  311 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 410  Q
    ||||||||| |||||||| || |||||  |||| |||||||||| ||||||||||||||||| ||| |||| ||||  |||  |||||||||||| |||     
T  22540421 agaaatgcttaaattagcgagtcaatcaacactcctatttcctttacgccaagtatggttgagttgaacattccaactcatcttcagcagcttccggatc 22540322  T
Q  411 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    |  | |||||||| ||| | ||| ||||  |||||||| |  |||||||||| ||||||||| |||||  | |||||||| || |||||||||    
T  22540321 cagtaaactaaaacaggaatatttccatcgaacttgaaattatcagaaatcacgtcgatcaaaatctttgaatcactttcaactataagatga 22540229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 368
Target Start/End: Complemental strand, 32386752 - 32386547
Alignment:
Q  164 tacaatagagggcaaagcccaaa-agaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    ||||| ||||||||||| ||||| | |||| ||| || |||||||| ||  | || |||||||| |||| ||||||||||||||||||||  ||  |  |    
T  32386752 tacaaaagagggcaaagtccaaagaaaaaaaaaattaagaaattaaacgggcgtttctaggcatacaagtcccggaaatatcatcaaacaaaagactctg 32386653  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||| |||| |||||||||| ||||   ||||  | |  || ||  |||||||| ||||||||||| ||||| |||||| | || ||||||||||||    
T  32386652 aagctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagtcaatcagcacttatgttgccttcacgccaa 32386553  T
Q  363 gtatgg 368  Q
    ||||||    
T  32386552 gtatgg 32386547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 236 - 387
Target Start/End: Complemental strand, 32786189 - 32786038
Alignment:
Q  236 ggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaa 335  Q
    ||||||||  ||||| | ||||||| |||| | | ||| ||||||||| |||| || ||| |||||||||| |  |  |||| |||  || |||| ||||    
T  32786189 ggaaatattgtcaaataggagcttttgaagtttagtagaaggagtctctaaaacaagcaagttcaaatgatccttaacaatgttaatgtttgcaaaccaa 32786090  T
Q  336 tcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaat 387  Q
    ||  ||||| ||||||||||||  |||||||| |||||||||||||||||||    
T  32786089 tcaacacttttatttccttcacaacaagtatgattgatttgcacatgccaat 32786038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 367
Target Start/End: Original strand, 41549939 - 41550094
Alignment:
Q  212 aacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcaca 311  Q
    |||||| |||||||||||||||||| ||||||||||||| | |||  |    |||||| ||||||| |||||||||| ||  |||| | ||  || |||     
T  41549939 aacatttctaggcatgcaagccccgaaaatatcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacg 41550038  T
Q  312 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 367  Q
    | || ||| ||||||||||||||||||| |||| |||| |  || |||||||||||    
T  41550039 gtaaggctgaaattagcaagccaatcggtacttttattgctctctcgccaagtatg 41550094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 16081749 - 16081680
Alignment:
Q  219 ctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaa 288  Q
    ||||| ||||| || || ||||||||||||||||||||  || |||||||| ||||||||| ||||||||    
T  16081749 ctaggtatgcacgctccagaaatatcatcaaacatgaggctttgaagctcattaggaggagactccaaaa 16081680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 1189164 - 1189121
Alignment:
Q  344 tctatttccttcacgccaagtatggttgatttgcacatgccaat 387  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||    
T  1189164 tctattgccttcacgtcaagtatggttaatttgcacatgccaat 1189121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 309
Target Start/End: Complemental strand, 42132821 - 42132750
Alignment:
Q  238 aaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattca 309  Q
    |||| |||||| ||||||||||| ||||||   |||| ||||||| ||||| ||||||||| ||||||||||    
T  42132821 aaatgtcatcagacatgagcttttgaagcttggtaggtggagtcttcaaaacaatcaaatttaaatgattca 42132750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 18883756 - 18883718
Alignment:
Q  170 agagggcaaagcccaaaagaaaagaaactacgaaattaa 208  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  18883756 agagggcaaagtccaagagaaaagaaactacgaaattaa 18883718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 7531171 - 7531130
Alignment:
Q  209 ccgaacattcctaggcatgcaagccccggaaatatcatcaaa 250  Q
    ||||||| ||||||||||||||||||||||||  ||||||||    
T  7531171 ccgaacactcctaggcatgcaagccccggaaaagtcatcaaa 7531130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 26590189 - 26590230
Alignment:
Q  209 ccgaacattcctaggcatgcaagccccggaaatatcatcaaa 250  Q
    |||||||||||||| ||||||||| ||| |||||||||||||    
T  26590189 ccgaacattcctagacatgcaagctccgaaaatatcatcaaa 26590230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 163 - 515
Target Start/End: Original strand, 54812088 - 54812440
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  54812088 gtacaatagagggcaaagcccaaaagaaaagaaactgcgaaattaaccggacattcctaggcatgcaagcccgggaaatatcatcaaacatgagctttcg 54812187  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54812188 aagctcaataggaggagtctccgaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 54812287  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54812288 gtatggttgatttgcacatgctaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 54812387  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  54812388 tgtcgatcaatatcttcgagtcactttccacaataagatgatcaaaatgctcc 54812440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 163 - 515
Target Start/End: Complemental strand, 46428915 - 46428563
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||| |||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46428915 gtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaacggacattcctaggcatgcaagcctcggaaatatcatcaaacatgagctttcg 46428816  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46428815 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacataaatgctaaaattagcaagccaatcggcacttctatttccttcatgccaa 46428716  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  46428715 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcatattcccattaaacttgaacttgtcagaaatca 46428616  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  46428615 tgtcgatcaatatcttcgagtcactttccacaataagatgatcaaaatgctcc 46428563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 163 - 515
Target Start/End: Complemental strand, 42794845 - 42794493
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||| |||||||||||||||  ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42794845 gtacaaaagagggcaaagcccaggagaaaagaaactacgaaattaaccgcacattcctaggcgtgcaagccccggaaatatcatcaaacatgagctttcg 42794746  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||    
T  42794745 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacatatattctaaaattagcaagccaatcggcacttctatttccttcacgccaa 42794646  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||    
T  42794645 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcatattcccattaaacttgaacttgttagaaatca 42794546  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42794545 tgtcgatcaatatcttcgagtcactttccacaataagatgatcaaaatgctcc 42794493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 170 - 515
Target Start/End: Original strand, 43912099 - 43912444
Alignment:
Q  170 agagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctca 269  Q
    |||||||||| ||||| ||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||||| |||| ||| ||||||||    
T  43912099 agagggcaaaacccaagagaaaagaaactacgaaattaactggacattcttaggcatgcaaaccccggaaatatcatcaaacgtgaggttttgaagctca 43912198  T
Q  270 ataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggt 369  Q
     |||  ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||  |||   ||||| ||||| |||| |||||  ||||||    
T  43912199 gtagctggagtctccaaaacaaccaaattcaaatgattcacagaaatgttaaaattagcaaggtaatatacacttatattttcttcgcgccagatatggt 43912298  T
Q  370 tgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgat 469  Q
    |||||||||| |||||||||||| ||| ||||||||||||||||||| |||||||||  | ||||||||||||||||||||  ||||||||||||| |||    
T  43912299 tgatttgcacttgccaatccattttcaacagcttcctgatacgatgagctaaaatagagatattcccattaaacttgaacttctcagaaatcatgttgat 43912398  T
Q  470 caatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    |||||||||  |||||||||| || |||||||||||||||||||||    
T  43912399 caatatctttgagtcactttcaactataagatgatcaaaatgctcc 43912444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 163 - 503
Target Start/End: Complemental strand, 54347095 - 54346754
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaact-acgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgag-cttt 260  Q
    |||||| |||||||||||||||||| |||| ||| | | ||| |||| |||||||||||||||||| |||||||||| | ||||||||| | ||  ||||    
T  54347095 gtacaagagagggcaaagcccaaaaaaaaacaaaattaagaagttaatcgaacattcctaggcatgtaagccccggataaatcatcaaaaaggattcttt 54346996  T
Q  261 cgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcc 360  Q
     ||  ||||  |||||||| |||||  | ||  ||||| |||||||    ||||||||| |||||||| |||||||| ||||| ||||||||||||||||    
T  54346995 tgac-ctcacaaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgcc 54346897  T
Q  361 aagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaat 460  Q
    |||||||| ||| ||| |||| ||||  |||  |||||||||||| |||||| | |||||||| ||| | ||| ||||| |||||||| |  ||||||||    
T  54346896 aagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaat 54346797  T
Q  461 catgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    |||||||||||| |||||  | ||||||||||| |||||||||    
T  54346796 catgtcgatcaaaatctttgaatcactttccactataagatga 54346754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 311 - 503
Target Start/End: Original strand, 27156155 - 27156347
Alignment:
Q  311 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 410  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||| |||| ||||  |||  |||||||||||| |||     
T  27156155 agaaatgctgaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttccggatc 27156254  T
Q  411 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    || | |||||||| ||| | |||||||||||||||||| |  |||||||||||||||||||| |||||  | ||||||||||| |||||||||    
T  27156255 cggtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccactataagatga 27156347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 367
Target Start/End: Complemental strand, 25906022 - 25905871
Alignment:
Q  216 ttcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaa 315  Q
    ||||||||||||||| |||||||||||||||||||||  ||  |  |||||||| |||| |||||||| | ||||   ||||  | |  || ||  ||||    
T  25906022 ttcctaggcatgcaaaccccggaaatatcatcaaacaaaagactctgaagctcactagggggagtctcaagaatatgtaaatctagaaaatccattgaaa 25905923  T
Q  316 tgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 367  Q
    |||| ||||||||||| ||||| |||||||| || ||||||| |||||||||    
T  25905922 tgctgaaattagcaagtcaatctgcacttctgttgccttcacaccaagtatg 25905871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 37503204 - 37503148
Alignment:
Q  312 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 368  Q
    |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||||    
T  37503204 gaaatgctaaaattagcaagtcaatctgcacttctgttgccttcacgtcaagtatgg 37503148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 381
Target Start/End: Complemental strand, 43813266 - 43813088
Alignment:
Q  202 aaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaa 301  Q
    ||||||| ||||||||||||||||| ||| |  |||| | ||||||||| ||||| | | | | |||| ||||||||| || ||| |  | |||||| ||    
T  43813266 aaattaatcgaacattcctaggcatacaaactacggataaatcatcaaaaatgagttattggacctcactaggaggagacttcaacaacaacaaatt-aa 43813168  T
Q  302 atgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacat 381  Q
    | |||  | ||||||||| || ||||| || ||||| ||||| | |||||||||||||||| ||||||||| ||| ||||    
T  43813167 acgatctatagaaatgcttaagttagcgagtcaatcagcactccaatttccttcacgccaattatggttgagttgaacat 43813088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 36276009 - 36275940
Alignment:
Q  174 ggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatc 244  Q
    ||||||||||||| ||||| ||| || |||||||| |||||||||||| |||||||| | |||||||||||    
T  36276009 ggcaaagcccaaa-gaaaaaaaattatgaaattaaacgaacattcctaagcatgcaaactccggaaatatc 36275940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 44938322 - 44938282
Alignment:
Q  210 cgaacattcctaggcatgcaagccccggaaatatcatcaaa 250  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  44938322 cgaacattcctagacatgcaagtcccggaaatatcatcaaa 44938282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 46911858 - 46911790
Alignment:
Q  219 ctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaa 287  Q
    ||||| ||||| || || ||||||||||||||||||||  || |||||||| ||| ||||| |||||||    
T  46911858 ctaggtatgcacgctccagaaatatcatcaaacatgaggctttgaagctcattagaaggagactccaaa 46911790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 163 - 515
Target Start/End: Original strand, 22065041 - 22065393
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22065041 gtacaatagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 22065140  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22065141 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagatatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 22065240  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22065241 gtatggttgatttgcacatgccaatccattctcagcagcctcctgatacgatgaactaaaataggcacattcccattaaacttgaacttgtcagaaatca 22065340  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22065341 tgtcgatcaatatcttcgagtcactttccacaataagatgatcaaaatgctcc 22065393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 177 - 503
Target Start/End: Complemental strand, 23950044 - 23949717
Alignment:
Q  177 aaagcccaaaagaaaagaaact-acgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgag-ctttcgaagctcaatagg 274  Q
    |||||||||||||||| ||| | | ||| |||| ||||||||||||||||||||| ||||||| | ||||||||| ||||  |||| ||  ||||  |||    
T  23950044 aaagcccaaaagaaaacaaaattaagaagttaatcgaacattcctaggcatgcaaaccccggataaatcatcaaaaatgattcttttgac-ctcacaagg 23949946  T
Q  275 aggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatt 374  Q
    ||||| |||||| | ||| ||||| |||||||    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| |    
T  23949945 aggagactccaacacaataaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagt 23949846  T
Q  375 tgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaata 474  Q
    || |||| | ||  |||  |||||||||||| |||||| | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||||||||| |    
T  23949845 tgaacattctaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaa 23949746  T
Q  475 tcttcaagtcactttccacaataagatga 503  Q
    ||||  | ||||||||||| |||||||||    
T  23949745 tctttgaatcactttccactataagatga 23949717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 164 - 503
Target Start/End: Complemental strand, 5309001 - 5308661
Alignment:
Q  164 tacaatagagggcaaagcccaaaagaaaagaaact-acgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgag-ctttc 261  Q
    ||||| ||||||||||||||||||| ||| ||| | | ||| |||| |||||||||||||||||||||| || ||| | ||||||||| ||||  ||||     
T  5309001 tacaagagagggcaaagcccaaaagtaaacaaaattaagaagttaatcgaacattcctaggcatgcaagtcctggataaatcatcaaaaatgattctttt 5308902  T
Q  262 gaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 361  Q
    ||  ||||  |||||||| |||||| | ||  ||||| |||||||    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  5308901 gac-ctcacaaggaggagactccaacacaagaaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgcca 5308803  T
Q  362 agtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatc 461  Q
    ||||||||||| ||| |||| ||||  |||  ||||||| |||| |||||| | |||||||| ||| | ||| ||||| |||||||| |  |||||||||    
T  5308802 agtatggttgagttgaacattccaactcatcttcagcagattccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatc 5308703  T
Q  462 atgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    ||||||||||| |||||  | ||||||||||| |||||||||    
T  5308702 atgtcgatcaaaatctttgattcactttccactataagatga 5308661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 238 - 515
Target Start/End: Complemental strand, 2601466 - 2601190
Alignment:
Q  238 aaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatc 337  Q
    ||||||||||||| |  |||||| |||||||| ||| |||| || |||||| ||||||||||||||||| |||| |||||||| | |||||||||||||     
T  2601466 aaatatcatcaaagagaagcttttgaagctcactagaaggattccccaaaacaatcaaattcaaatgatccacaaaaatgctatagttagcaagccaata 2601367  T
Q  338 ggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattccca 437  Q
     |||||| |||||  ||   |||||| ||| ||||||||||||| ||||| |||  ||||||||||| |||||   |||||||||||||  | |||| ||    
T  2601366 agcacttatattttgtttgtgccaagaatgattgatttgcacatcccaattcatgttcagcagcttcatgatatagtgaactaaaatagttatattctca 2601267  T
Q  438 ttaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||| | ||||||| |||||||||| ||||||||  | ||||||||||| |||||| || |||||||||||    
T  2601266 ttaaacttgaatttgtcagaattcatgtcgat-aatatcttagaatcactttccactataagacgaccaaaatgctcc 2601190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 170 - 503
Target Start/End: Original strand, 23084758 - 23085090
Alignment:
Q  170 agagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctca 269  Q
    |||||||||||||||||| || | ||| || | | |||| |||||||||||||| |||||||| ||||| | ||||||||| ||||   ||   | ||||    
T  23084758 agagggcaaagcccaaaaaaata-aaattaaggagttaatcgaacattcctaggtatgcaagctccggataaatcatcaaaaatgattattttgacctca 23084856  T
Q  270 ataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggt 369  Q
      |||||||| |||||| |  |  ||||| ||||||| |  ||||||||| |||||||| |||||||| ||||| |||||||||||||||||| ||||||    
T  23084857 caaggaggagactccaacactagaaaattaaaatgatacgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaaatatggt 23084956  T
Q  370 tgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgat 469  Q
    ||| ||| |||| ||||  |||  |||||||||||| ||| || | |||||||| | | | ||||||||| |||||||| |  ||| |||||||||||||    
T  23084957 tgagttgaacattccaactcatcttcagcagcttccggatccggtaaactaaaacatgaatattcccattgaacttgaaattatcaaaaatcatgtcgat 23085056  T
Q  470 caatatcttcaagtcactttccacaataagatga 503  Q
    ||| ||||| || ||||||||||| |||||||||    
T  23085057 caaaatctttaaatcactttccactataagatga 23085090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 163 - 472
Target Start/End: Complemental strand, 42677551 - 42677241
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaact-acgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgag-cttt 260  Q
    |||||| ||||||||||||||||||||||| ||| | | ||| |||| |||| ||||||||||||||||||||| || | ||||||||| | ||  ||||    
T  42677551 gtacaagagagggcaaagcccaaaagaaaacaaaattaagaagttaatcgaatattcctaggcatgcaagccccagataaatcatcaaaaaggattcttt 42677452  T
Q  261 cgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcc 360  Q
     ||  ||||  |||||||| |||||| |  |  ||||| ||| |||    ||||||||| |||||||| |||||||| ||||| ||||||||||||||||    
T  42677451 tgac-ctcacaaggaggagactccaacactagaaaattaaaaagatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgcc 42677353  T
Q  361 aagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaat 460  Q
    |||||||||||| ||| |||| ||||  |||  |||||||||||| |||||| | |||||||| ||| | ||| ||||| |||||||| |  ||||||||    
T  42677352 aagtatggttgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaat 42677253  T
Q  461 catgtcgatcaa 472  Q
    ||||||||||||    
T  42677252 catgtcgatcaa 42677241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 174 - 307
Target Start/End: Complemental strand, 11531583 - 11531450
Alignment:
Q  174 ggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaatag 273  Q
    |||||||| ||| | |||||||||||||||||||| || |||||| ||| ||||||||| ||| |||||||||||||||||||||||  |||||   |||    
T  11531583 ggcaaagctcaagacaaaagaaactacgaaattaatcggacattcttagacatgcaagctccgaaaatatcatcaaacatgagcttttaaagctgggtag 11531484  T
Q  274 gaggagtctccaaaataatcaaattcaaatgatt 307  Q
    ||| ||||||||||||||||||||||||||||||    
T  11531483 gagaagtctccaaaataatcaaattcaaatgatt 11531450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 311 - 501
Target Start/End: Original strand, 50952555 - 50952745
Alignment:
Q  311 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 410  Q
    ||||||||| | |||||| |||||||| ||||| |||||| ||||||||||||||||||||| ||| |||| ||||  |||  |||||||||||| |||     
T  50952555 agaaatgcttatattagcgagccaatcagcactcctattttcttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttccggatc 50952654  T
Q  411 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagat 501  Q
    || | |||||||| | | | ||||||||| |||||||| |  |||||||||||||||||||| |||||  | ||||||||||| |||||||    
T  50952655 cggtaaactaaaacatgaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccactataagat 50952745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 179 - 367
Target Start/End: Complemental strand, 6294264 - 6294076
Alignment:
Q  179 agcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggagga 278  Q
    |||||||| ||||  |||||| |||||||| || || |||||||||||||||||||||||||||||||||||||  ||  |  |||||||| ||||||||    
T  6294264 agcccaaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggagga 6294165  T
Q  279 gtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 367  Q
    ||||||| ||||   ||||  | |  || |   |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||    
T  6294164 gtctccagaatatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatg 6294076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 163 - 503
Target Start/End: Original strand, 34553712 - 34554052
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||| |||| ||||||||||||| |||| ||||||  ||  ||| ||||||||| ||||||||||||| | ||| | ||||||||| | ||  ||| |    
T  34553712 gtacaagagagagcaaagcccaaaaaaaaaaaaactaacaagctaatcgaacattcataggcatgcaagctctggataaatcatcaaaaaggattttttg 34553811  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
     | |||| ||||||||| |||||| | ||  ||||| || ||||    | ||||| | |||||||| || ||||| ||||||||||||||||||| ||||    
T  34553812 gacctcactaggaggagactccaacacaagaaaattaaagtgatatgtataaatgtttaaattagcgagtcaatcagcacttctatttccttcacaccaa 34553911  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    |||||||||| ||| |||| | ||  |||  |||||| ||||  ||| |  |||||||||||||  | |||||||| ||| |  || |  ||||||||||    
T  34553912 gtatggttgagttgaacattctaactcatcttcagcatcttctggatccagtgaactaaaatagaaatattcccatcaaattcaaaattatcagaaatca 34554011  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    ||||||| || |||||  | ||||||||||| |||||||||    
T  34554012 tgtcgataaaaatctttgaatcactttccactataagatga 34554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 290
Target Start/End: Original strand, 38168197 - 38168308
Alignment:
Q  179 agcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggagga 278  Q
    |||||||| ||||  |||||| |||||||| || || |||||||||||||||||||||||||||||||||||||  ||  |  |||||||| ||||||||    
T  38168197 agcccaaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggagga 38168296  T
Q  279 gtctccaaaata 290  Q
    ||||||| ||||    
T  38168297 gtctccagaata 38168308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 368
Target Start/End: Complemental strand, 16855210 - 16855004
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaa-ctacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttc 261  Q
    |||||| |||||||||||||||||  |||||||| ||| |||||||| || || ||||| | ||||||||||||| |||||| ||||||||  ||  |      
T  16855210 gtacaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttccttgacatgcaagccccgaaaatattatcaaacaaaagactct 16855111  T
Q  262 gaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 361  Q
    |||||||| |||| ||||||| || ||||   ||||  | |  || ||  |||||||| ||||||||||||||||| |||||||| || ||||| |||||    
T  16855110 gaagctcactagggggagtcttcagaatatgaaaatctagaaaatccattgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgcca 16855011  T
Q  362 agtatgg 368  Q
    |||||||    
T  16855010 agtatgg 16855004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 8059849 - 8059923
Alignment:
Q  311 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgcca 385  Q
    ||||| ||||||||||||||||||||| |||||||||||||| || ||||| |||||||||| |||||| |||||    
T  8059849 agaaaagctaaaattagcaagccaatcagcacttctatttccctcgcgccaggtatggttgaattgcacctgcca 8059923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 242 - 364
Target Start/End: Original strand, 12673188 - 12673310
Alignment:
Q  242 atcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggca 341  Q
    |||||||||||||||  || |||||||| ||||||||  ||||||||  |||| |||| ||  ||||| ||| | ||||||||| || |||||||| |||    
T  12673188 atcatcaaacatgaggctttgaagctcattaggaggatactccaaaactatcagattccaagaattcaaagataagctaaaattggctagccaatcagca 12673287  T
Q  342 cttctatttccttcacgccaagt 364  Q
    | | |||| ||||||||||||||    
T  12673288 catatattgccttcacgccaagt 12673310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 367
Target Start/End: Complemental strand, 39476175 - 39476120
Alignment:
Q  312 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 367  Q
    |||||||| ||||||||||| ||||| |||||| | || |||||||||||||||||    
T  39476175 gaaatgctgaaattagcaagacaatctgcacttttgttgccttcacgccaagtatg 39476120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 202 - 368
Target Start/End: Complemental strand, 28706216 - 28706051
Alignment:
Q  202 aaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaa 301  Q
    ||||||| || || |||||||||||||| |||||| |||||||||||||||  ||  |  |||||| | |||| | | |||||||||||   ||||  ||    
T  28706216 aaattaaacggacgttcctaggcatgcaggccccg-aaatatcatcaaacaaaagactatgaagcttactaggggtattctccaaaatatgaaaatctaa 28706118  T
Q  302 atgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 368  Q
    |  || ||  |||||||| ||||||||||||||||   ||||| | || ||||||||||||||||||    
T  28706117 aaaatccatcgaaatgctgaaattagcaagccaatatacacttttgttgccttcacgccaagtatgg 28706051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 50952404 - 50952477
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaa-gaaactacgaaattaaccgaacattcctaggcatgcaagcccc 235  Q
    |||||| ||||||||||| |||||||||||  ||| || |||  ||| |||||||||||||| |||||||||||    
T  50952404 gtacaagagagggcaaagtccaaaagaaaacaaaattaagaagctaatcgaacattcctaggtatgcaagcccc 50952477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 163 - 515
Target Start/End: Complemental strand, 17290388 - 17290036
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17290388 gtacaatagagggcaaagtccaagagaaaagaaactacgaaattaaccggacatttctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 17290289  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17290288 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatactaaaattagcaagccaatcggcacttctatttccttcacgccaa 17290189  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17290188 atatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 17290089  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17290088 tgtcgatcaatatcttcgagtcactttccacaataagatgatcaaaatgctcc 17290036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 163 - 503
Target Start/End: Complemental strand, 13187247 - 13186907
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaact-acgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttc 261  Q
    |||||| ||||||||||||||||||||||| ||| | | ||| |||| ||||||||||||||||||||||||||| | | ||||||||| | ||   ||     
T  13187247 gtacaagagagggcaaagcccaaaagaaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgaataaatcatcaaaaaggattcttt 13187148  T
Q  262 gaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 361  Q
    ||  ||||  |||||||| |||||| | ||| ||||| |||||||    ||||||||| |||||||| |||||||| ||||| |||||||||||||||||    
T  13187147 gac-ctcacaaggaggagactccaacacaataaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgcca 13187049  T
Q  362 agtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatc 461  Q
    |||||| |||| ||| |||| ||||  | |  |||||||||||| |||||| | |||||||| ||| | ||| ||||| |||||||| |  |||||||||    
T  13187048 agtatgattgagttgaacattccaactcgtcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatc 13186949  T
Q  462 atgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    ||||||||||| |||||  | ||||||||||| |||||||||    
T  13186948 atgtcgatcaaaatctttgaatcactttccactataagatga 13186907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 215 - 385
Target Start/End: Original strand, 26381158 - 26381328
Alignment:
Q  215 attcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaa 314  Q
    ||||||| |||| |||||||| |||| ||||||||| | ||||||| |||| ||| |||||||||||||||||| || |||||||||||||| |  || |    
T  26381158 attcctaagcatacaagcccctgaaacatcatcaaataggagcttttgaagttcactaggaggagtctccaaaacaaacaaattcaaatgatccttagta 26381257  T
Q  315 atgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgcca 385  Q
    ||||| |  ||||||||||||||   |||| |||||||||||| | |||||||||||||||||||||||||    
T  26381258 atgctgatgttagcaagccaatcaaaacttttatttccttcacacgaagtatggttgatttgcacatgcca 26381328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 163 - 423
Target Start/End: Original strand, 40426006 - 40426267
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaa-actacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatga-gcttt 260  Q
    |||||| ||||||||||||||||||||||| || | || ||| |||| ||||||||||||||||||||||||||||| | ||||||||| | ||  ||||    
T  40426006 gtacaagagagggcaaagcccaaaagaaaacaagattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaagattcttt 40426105  T
Q  261 cgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcc 360  Q
     | | ||||  |||||||| |||||  | ||  ||||| |||||||    ||||||||| |||||||| || ||||| ||||| ||||||||||||| ||    
T  40426106 tg-acctcacaaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagtcaatcagcactcctatttccttcacacc 40426204  T
Q  361 aagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaa 423  Q
    || ||||| ||| ||| |||| ||||  |||  |||||||||||| |||||| | ||||||||    
T  40426205 aaatatgggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaa 40426267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 163 - 448
Target Start/End: Complemental strand, 6599280 - 6598993
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaaga--aactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagcttt 260  Q
    |||||| ||| |||||||||||||| |||| |  |||||  ||  ||| ||||||||| ||||||||||||||||||| | ||||||||| |  |  |||    
T  6599280 gtacaaaagatggcaaagcccaaaaaaaaaaacaaactaaaaagctaaacgaacattcttaggcatgcaagccccggataaatcatcaaaaagtattttt 6599181  T
Q  261 cgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcc 360  Q
     | | |||| ||||||||| |||||| |  |  ||||  || ||||    ||||||||| |||||||| |||||||| |||||  |||||||||||||||    
T  6599180 tggacctcactaggaggagactccaacactaaaaaatcaaagtgatatgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgcc 6599081  T
Q  361 aagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaa 448  Q
    || ||||||||| ||| |||| ||||| |||  |||||| ||||| ||| || |||||||||| ||| | ||||||||| ||||||||    
T  6599080 aattatggttgagttgaacattccaattcatcttcagcaacttccggatccggtgaactaaaacaggaatattcccattgaacttgaa 6598993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 311 - 503
Target Start/End: Original strand, 7305068 - 7305260
Alignment:
Q  311 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 410  Q
    ||||||||| |||||||  |||||||| ||||| |||||||||||||||||||||||||||| ||| | || ||||  |||  ||||||| |||| |||     
T  7305068 agaaatgcttaaattagagagccaatcagcactcctatttccttcacgccaagtatggttgagttgaaaattccaactcatcttcagcaggttccggatc 7305167  T
Q  411 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    || | || ||||| ||| | |||| |||| |||||||| |  | |||||||||||||||||| |||||  | ||||||||||| |||||||||    
T  7305168 cggtaaagtaaaacaggaatattctcattgaacttgaaattattagaaatcatgtcgatcaaaatctttgaatcactttccactataagatga 7305260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 163 - 367
Target Start/End: Original strand, 24126257 - 24126462
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaa-ctacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttc 261  Q
    |||||| |||||||||||||||||  |||||||| ||| |||||||| || |  ||||||||||||||||||| |||||||||||||||||  ||  |      
T  24126257 gtacaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggaagttcctaggcatgcaagccctggaaatatcatcaaacaaaagactct 24126356  T
Q  262 gaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 361  Q
    |||||||| |||| |||||||||| ||||   ||||  | |  || ||  |||||||| ||||||||||| ||||| |||||| | || |||||||||||    
T  24126357 gaagctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagtcaatctgcacttatgttgccttcacgcca 24126456  T
Q  362 agtatg 367  Q
     |||||    
T  24126457 tgtatg 24126462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 42866165 - 42865976
Alignment:
Q  179 agcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggagga 278  Q
    |||||||| ||||  |||||| |||||||| || || ||||||||||||||||| |||||||||||||||||||  ||  |  |||||||| ||||||||    
T  42866165 agcccaaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctgaagctcactaggagga 42866066  T
Q  279 gtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 368  Q
    ||||||| ||||   ||||  | |  || |   |||||||| ||||||||||||||||| |||||| | || ||||| ||||||||||||    
T  42866065 gtctccagaatatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttttgttgccttcccgccaagtatgg 42865976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 311 - 477
Target Start/End: Original strand, 37307282 - 37307448
Alignment:
Q  311 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 410  Q
    ||||||||| || ||| | |||||||| ||||| |||||||||||||| ||||||||||||| ||| ||||  |||  |||  || ||| ||| | |||     
T  37307282 agaaatgcttaagttaacgagccaatcagcactcctatttccttcacgtcaagtatggttgagttgaacatttcaactcatcttcggcaactttcagatc 37307381  T
Q  411 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatct 477  Q
    || | |||||||| ||| | |||| |||| |||||||| |  |||||||||||||||||||| ||||    
T  37307382 cggtaaactaaaacaggaatattctcattgaacttgaaattatcagaaatcatgtcgatcaaaatct 37307448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 163 - 366
Target Start/End: Original strand, 11995575 - 11995779
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaa-ctacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttc 261  Q
    |||||| |||||||||| ||||||  |||||||| ||| |||||||| || || ||||||| |||||||||||  |||||||||| ||| |  ||  |      
T  11995575 gtacaaaagagggcaaatcccaaagaaaaagaaaactaagaaattaaacggacgttcctagacatgcaagcccttgaaatatcattaaaaaaaagactct 11995674  T
Q  262 gaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 361  Q
    | |||||| |||| |||||||||| ||||   ||||  | |  || ||  |||||||| ||||||||||| ||||| |||||||| || |||||||||||    
T  11995675 ggagctcactagggggagtctccagaatatgaaaatatagaaaatccatcgaaatgctgaaattagcaagacaatctgcacttctgttgccttcacgcca 11995774  T
Q  362 agtat 366  Q
    |||||    
T  11995775 agtat 11995779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 40614906 - 40614981
Alignment:
Q  178 aagcccaaa-agaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaaca 252  Q
    ||||||||| |||||  |||||| |||||||| || || |||||||||||||||||||| ||||||||||||||||    
T  40614906 aagcccaaagagaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaaca 40614981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 40615032 - 40615087
Alignment:
Q  312 gaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 367  Q
    |||||||| |||||||||| |||||| |||||||| || |||||||||||||||||    
T  40615032 gaaatgctgaaattagcaaaccaatctgcacttctgttaccttcacgccaagtatg 40615087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 7304957 - 7305027
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagcc 233  Q
    |||||| |||||||||||||||||| |||  |||||| |||  ||| ||||||||| ||||||||||||||    
T  7304957 gtacaagagagggcaaagcccaaaaaaaacaaaactaagaagctaatcgaacattcttaggcatgcaagcc 7305027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 9004794 - 9004749
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaa 208  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||||    
T  9004794 gtacaatagagggcaaagtccaagagaaaagaaactatgaaattaa 9004749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 6372741 - 6372673
Alignment:
Q  318 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 386  Q
    ||||||||||| |||||||| ||   | | ||||||||||||||||||||||||||||| || ||||||    
T  6372741 ctaaaattagctagccaatcagccgatttgtttccttcacgccaagtatggttgatttgaacttgccaa 6372673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Complemental strand, 981583 - 981510
Alignment:
Q  215 attcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaa 288  Q
    ||||||||||||||| || ||  ||||||||||||||||||  ||| |||||||| ||| ||||  ||||||||    
T  981583 attcctaggcatgcacgctccataaatatcatcaaacatgaagttttgaagctcattagaaggatactccaaaa 981510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 24467791 - 24467731
Alignment:
Q  319 taaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcac 379  Q
    ||||||||| |||||||||  ||||||||||||| || || ||| ||||||||| ||||||    
T  24467791 taaaattaggaagccaatcaacacttctatttccctcccgtcaaatatggttgaattgcac 24467731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 163 - 515
Target Start/End: Complemental strand, 44146063 - 44145712
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||  ||||||||||||||||| |||||||||||| ||||||||||||    
T  44146063 gtacaatagagggcaaagcccaagagaaaagaaattacgaaattaaccggacatttttaggcatgcaagccccgaaaatatcatcaaccatgagctttcg 44145964  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  44145963 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaa 44145864  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145863 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 44145764  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  44145763 tgtcgatcaatatcttcgagtcactttccac-ataagatgatcaaaatgctcc 44145712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 170 - 515
Target Start/End: Original strand, 38560465 - 38560810
Alignment:
Q  170 agagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctca 269  Q
    ||||||||||   ||| ||||||||||||||||||||||||| | |||  |||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  38560465 agagggcaaaattcaagagaaaagaaactacgaaattaaccggatattgataggcatgcaagtcccggaaatatcatcaaacatgagcttttgaagctca 38560564  T
Q  270 ataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggt 369  Q
     | |  | ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  38560565 gtggatgaagtcttcaaaacaatcaaattcaaatgattcacaaaaatgctaaaattagcaagccaatcggcacttctatttccttcgtgccaagtatggt 38560664  T
Q  370 tgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgat 469  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||   |||||||||| ||||||    
T  38560665 tgatttgcacatgccaatccattctcagcagcttcttgatacgatgaactaaaatagggatattcccattaaatttgaacctatcagaaatcacgtcgat 38560764  T
Q  470 caatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    |||||||||| || |||||||||| |||||||||||||||||||||    
T  38560765 caatatcttcgagccactttccactataagatgatcaaaatgctcc 38560810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 165 - 503
Target Start/End: Complemental strand, 1636356 - 1636017
Alignment:
Q  165 acaatagagggcaaagcccaaaagaaaagaaactacgaaa-ttaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgag-ctttcg 262  Q
    |||| ||||| ||||||||||||||||| ||| |   ||| |||| |||||||| ||||||||||||| ||| || | ||||||||| ||||  |||| |    
T  1636356 acaagagaggacaaagcccaaaagaaaacaaaattaaaaagttaatcgaacatttctaggcatgcaagtcccagataaatcatcaaaaatgattcttttg 1636257  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    |  ||||| |||||||| |||||  | ||  ||||| |||||||    ||||||| | |||||||| |||||||| ||||| ||||||||||||||| ||    
T  1636256 at-ctcaaaaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgattaaattagcgagccaatcagcactcctatttccttcacgctaa 1636158  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    |||||| ||| ||| |||| ||||  |||  |||||||||||| |||||| | |||||||| ||| | ||||||||| |||||||| |  ||||||||||    
T  1636157 gtatgggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatca 1636058  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    |||||||||| |||||  | ||||||||||| |||||||||    
T  1636057 tgtcgatcaaaatctttgaatcactttccactataagatga 1636017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 163 - 368
Target Start/End: Complemental strand, 45093706 - 45093500
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaa-ctacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttc 261  Q
    |||||| |||||||||||||||||  |||||||| ||| |||||||| || || |||||||||||||||||||||||||||||||||||||  ||  |      
T  45093706 gtacaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactct 45093607  T
Q  262 gaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 361  Q
    |||||||| |||| ||||||| || ||||   ||||  | |  || ||  |||||||| ||||| ||||||||||| |||||||| || |||||||||||    
T  45093606 gaagctcactagggggagtcttcagaatatgaaaatctagaaaatccatcgaaatgctgaaatttgcaagccaatctgcacttctgttgccttcacgcca 45093507  T
Q  362 agtatgg 368  Q
    |||||||    
T  45093506 agtatgg 45093500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 311 - 503
Target Start/End: Original strand, 26616714 - 26616904
Alignment:
Q  311 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 410  Q
    ||||||||| |||||||  |||||||| | |||  ||||||||||||||||||||||||||| ||| |||| ||||  |||  |||||||||||| |||     
T  26616714 agaaatgcttaaattagtgagccaatcagtactcatatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcagcttccagatc 26616813  T
Q  411 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    || | ||||  || ||| | ||||||||| |||||||| |  |||||||||||||||||||| |||||  | ||||||||||| |||||||||    
T  26616814 cggtaaact--aacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccactataagatga 26616904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 164 - 368
Target Start/End: Complemental strand, 33373461 - 33373257
Alignment:
Q  164 tacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcga 263  Q
    ||||| ||||||||||||||||| ||||  |||||| |||||||| || || ||||||||||||||||| |||||||||||||||||||  ||  |  ||    
T  33373461 tacaaaagagggcaaagcccaaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaacaaaagactctga 33373362  T
Q  264 agctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaag 363  Q
    |||||| ||||||||||||||| ||||   ||||  | |  || |   |||||||| |||||||||| |||||| |||||| | || ||||| |||||||    
T  33373361 agctcactaggaggagtctccagaatatgaaaatctagaaaatccgtcgaaatgctgaaattagcaatccaatctgcacttttgttgccttcccgccaag 33373262  T
Q  364 tatgg 368  Q
    |||||    
T  33373261 tatgg 33373257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 178 - 368
Target Start/End: Complemental strand, 42000525 - 42000334
Alignment:
Q  178 aagcccaaaagaaaagaaa-ctacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggag 276  Q
    |||||||||  |||||||| ||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||  ||  || |||||||| ||||      
T  42000525 aagcccaaagaaaaagaaaactaagaaattaaacgaacattcctatgcatgcaagccccggaaatatcatcaaacaaaagactttgaagctcactaggga 42000426  T
Q  277 gagtctccaaaataatcaaattcaaatgatt-cacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 368  Q
    ||||||||| ||| || ||| || |   ||| ||  |||||||| ||||||||||||||||| |||||| | || ||||||||||||||||||    
T  42000425 gagtctccagaat-atgaaaatctagaaattccatcgaaatgctgaaattagcaagccaatctgcacttttgttgccttcacgccaagtatgg 42000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 9031486 - 9031655
Alignment:
Q  213 acattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacag 312  Q
    ||||||||| |||| ||||||||  |||  |||||||||| |||  || |||||||| ||||| |||||||||||| || |||||||||||||| |  |     
T  9031486 acattcctaagcatacaagccccaaaaacgtcatcaaacaggagtctttgaagctcactaggaagagtctccaaaaaaagcaaattcaaatgatccttaa 9031585  T
Q  313 aaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatg 382  Q
     ||||||||  || |||||||||||  |||||||||||||||||||  |||||||||| |||| ||||||    
T  9031586 taatgctaatgtttgcaagccaatcaacacttctatttccttcacgttaagtatggttaattttcacatg 9031655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 503
Target Start/End: Original strand, 456348 - 456540
Alignment:
Q  311 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 410  Q
    ||||||| | |||||||| |||||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||  |||| ||||||| |||     
T  456348 agaaatgtttaaattagcgagccaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcatcttcagtagcttccggatc 456447  T
Q  411 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    || |||| ||||| ||| | ||||||||| |||||||| |  ||||||||||| || |||||  ||||  | ||||||||||| |||||||||    
T  456448 cggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatatcaatcaaactctttgaatcactttccactataagatga 456540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 368
Target Start/End: Complemental strand, 35808468 - 35808261
Alignment:
Q  163 gtacaatagaggg-caaagcccaaa-agaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagcttt 260  Q
    |||||| |||||| |||| |||||| |||||  |||||| ||||||||  | || |||||||||||||||||||||||||||| ||||||||  ||  |     
T  35808468 gtacaaaagagggtcaaaacccaaagagaaagaaaactaagaaattaaaaggacgttcctaggcatgcaagccccggaaatataatcaaacaaaagactc 35808369  T
Q  261 cgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcc 360  Q
     |||||||| |||| ||| |||||| ||||   | ||  | |  || ||  |||||| |  |||||||||||||||| |||||||| || ||||||||||    
T  35808368 tgaagctcactagggggattctccataatatgaagatctagagaatccatcgaaatgttgtaattagcaagccaatctgcacttctgttgccttcacgcc 35808269  T
Q  361 aagtatgg 368  Q
    ||||||||    
T  35808268 aagtatgg 35808261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 1363022 - 1362962
Alignment:
Q  318 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgca 378  Q
    |||||||||||||||||||| |||||||||||||| ||  |||| |||||||||| |||||    
T  1363022 ctaaaattagcaagccaatcagcacttctatttccctcctgccaggtatggttgaattgca 1362962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 364
Target Start/End: Original strand, 40536263 - 40536407
Alignment:
Q  220 taggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgct 319  Q
    |||||||||| || ||  |||||||||||||||||||  || |||||||| ||||||||| |||||||   | || |||| ||  ||||| ||| | |||    
T  40536263 taggcatgcacgctccaaaaatatcatcaaacatgaggctttgaagctcattaggaggagactccaaagctaccagattccaagaattcaaagataagct 40536362  T
Q  320 aaaattagcaagccaatcggcacttctatttccttcacgccaagt 364  Q
    |||||| || |||||||| |||| ||| |  ||||||||||||||    
T  40536363 aaaattggctagccaatcagcacatctgtcgccttcacgccaagt 40536407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 20669984 - 20670017
Alignment:
Q  215 attcctaggcatgcaagccccggaaatatcatca 248  Q
    ||||||||||||||||||||| ||||||||||||    
T  20669984 attcctaggcatgcaagccccagaaatatcatca 20670017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 163 - 514
Target Start/End: Complemental strand, 24473807 - 24473456
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  24473807 gtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattcctcggcattcaagccccggaaatatcatcaaacatgagctttcg 24473708  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||| | |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24473707 aagctgagtaggaggagtttcgaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 24473608  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  24473607 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcatattcccattaaacttgaacttgtcagaaatca 24473508  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctc 514  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24473507 tgtcgatcaatatcttcgagtcactttccacaataagatgatcaaaatgctc 24473456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 163 - 429
Target Start/End: Complemental strand, 24468859 - 24468593
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  24468859 gtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattcctcggcattcaagccccggaaatatcatcaaacatgagctttcg 24468760  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||| | |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24468759 aagctgagtaggaggagtttcgaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 24468660  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggca 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24468659 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggca 24468593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 170 - 501
Target Start/End: Complemental strand, 48619287 - 48618955
Alignment:
Q  170 agagggcaaagcccaaaagaaaagaaact-acgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgag-ctttcgaagct 267  Q
    |||||||||||| |||||||||| ||| | | |||  ||| |||||||||||| |||||||||||||||| | ||||||||| | ||  |||| ||  ||    
T  48619287 agagggcaaagctcaaaagaaaacaaaattaagaagctaatcgaacattcctaagcatgcaagccccggataaatcatcaaaaaggattcttttgat-ct 48619189  T
Q  268 caataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 367  Q
    ||  |||||||| |||||| |  |  ||||| ||||||||   ||||||||| |||||||| |||||||| |||||  ||||||||||||||||||||||    
T  48619188 cagaaggaggagactccaacactagaaaattaaaatgatttgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaagtatg 48619089  T
Q  368 gttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcg 467  Q
    ||||| ||| |||| ||||  |||  |||||||||||| |||||  | |||||||| ||| | |||||||||||||||||| |  ||||||||||||||     
T  48619088 gttgagttgaacattccaactcatcttcagcagcttccggatacagtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtca 48618989  T
Q  468 atcaatatcttcaagtcactttccacaataagat 501  Q
    ||||| |||||  | ||||||||||| |||||||    
T  48618988 atcaaaatctttgaatcactttccactataagat 48618955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 163 - 503
Target Start/End: Original strand, 8019584 - 8019924
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaact-acgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgag-cttt 260  Q
    |||||| ||||||||||||||||||||||| ||| | | ||| |||| ||||||||| |||||||||||| |||||| | ||||||||| | ||  ||||    
T  8019584 gtacaagagagggcaaagcccaaaagaaaacaaaattaagaagttaatcgaacattcttaggcatgcaagtcccggataaatcatcaaaaaggattcttt 8019683  T
Q  261 cgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcc 360  Q
     ||  ||||  |||||||| |||||  | ||  ||||| |||||||    |||| | || |||||||| |||||||| ||||| ||||||||||||||||    
T  8019684 tgac-ctcacaaggaggagactccagcacaagaaaatt-aaatgatctgtagaattacttaaattagcgagccaatcagcactcctatttccttcacgcc 8019781  T
Q  361 aagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaat 460  Q
    |||||||| ||| ||| |||| ||||  |||  ||||||| |||| |||||| | |||||||| ||| | ||||||||| |||||||| |  ||||||||    
T  8019782 aagtatgggtgagttgaacattccaactcatcttcagcagattccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaat 8019881  T
Q  461 catgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    |||||||||||| |||||  | ||||||||||| |||||||||    
T  8019882 catgtcgatcaaaatctttgaatcactttccactataagatga 8019924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 176 - 367
Target Start/End: Complemental strand, 46046158 - 46045967
Alignment:
Q  176 caaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaatagga 275  Q
    ||||||||||| ||||  |||||| |||||||| || || ||||||| |||||||||||||||||||||||||||||  ||  |  |||||||| |||||    
T  46046158 caaagcccaaaggaaagaaaactaagaaattaaacggacgttcctagacatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactagga 46046059  T
Q  276 ggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 367  Q
    |||||||||| ||||   ||||  | |  || |   |||||||| ||||||||||||||||| |||||||| || ||||| |||||||||||    
T  46046058 ggagtctccagaatatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatg 46045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 163 - 368
Target Start/End: Complemental strand, 8035976 - 8035770
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaa-ctacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttc 261  Q
    |||||| |||||||||||| ||||  |||||||| ||| |||||||| |  || || ||||||||||||||||||||||||||||||||||  ||  |      
T  8035976 gtacaaaagagggcaaagctcaaagaaaaagaaaactaagaaattaaactgacgtttctaggcatgcaagccccggaaatatcatcaaacaaaagactct 8035877  T
Q  262 gaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 361  Q
    |||||| | |||| |||||||||| ||||   ||||  | |  || ||  |||||||| ||||||||||||||||| |||||||| || |||||||||||    
T  8035876 gaagctaactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgcca 8035777  T
Q  362 agtatgg 368  Q
    |||||||    
T  8035776 agtatgg 8035770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 179 - 368
Target Start/End: Original strand, 38110533 - 38110722
Alignment:
Q  179 agcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggagga 278  Q
    |||||||| ||||  |||||| |||||||| || || |||||||||||||||||||| ||||||||||||||||  ||  |  |||||||| |||| |||    
T  38110533 agcccaaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaacaaaagactctgaagctcactaggtgga 38110632  T
Q  279 gtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 368  Q
    ||||||| ||||   ||||  | |  || |   |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  38110633 gtctccagaatatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 38110722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 163 - 368
Target Start/End: Complemental strand, 5350257 - 5350053
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaa-ctacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttc 261  Q
    |||||| |||||||||||||||||  |||||||| ||| | |||||| || || ||||||||||| |||| || |||||||||||||||||  ||  |      
T  5350257 gtacaaaagagggcaaagcccaaagaaaaagaaaactaaggaattaaacggacgttcctaggcatacaagtcctggaaatatcatcaaacaaaagactct 5350158  T
Q  262 gaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 361  Q
    |||||||| |||| |||||||| | ||||   | ||  |||  || ||  |||||||| ||||||||||||||||| |||||| | || |||||||||||    
T  5350157 gaagctcactagggggagtctctagaatatgaatatagaaa--atccatcgaaatgctgaaattagcaagccaatctgcacttttgttgccttcacgcca 5350060  T
Q  362 agtatgg 368  Q
    |||||||    
T  5350059 agtatgg 5350053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 493
Target Start/End: Original strand, 29213615 - 29213899
Alignment:
Q  210 cgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattca 309  Q
    ||||||||||||||||||||||||| ||| | ||||||||| | ||   || | | |||| ||||||||| |||||| | ||  ||||| || ||||       
T  29213615 cgaacattcctaggcatgcaagcccaggataaatcatcaaaaaagattctttggacctcactaggaggagactccaacacaagaaaattaaagtgatctg 29213714  T
Q  310 cagaaatgctaaaattagcaagccaatcggcacttc-tatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctga 408  Q
     ||||||||| |||||||| || |||||  |||| | | |||| |||||||||||||||||||| ||| |||| ||||  |||  |||  ||||||  ||    
T  29213715 tagaaatgcttaaattagcgagtcaatcaacactccttttttctttcacgccaagtatggttgagttgaacattccaactcatcttcaatagcttctgga 29213814  T
Q  409 tacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccac 493  Q
    | || |||| ||||| ||  | ||| ||||| |||||||| |  |||||||||||||||||||| |||||  | |||||||||||    
T  29213815 tccggtgaagtaaaacagaaatatttccattgaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactttccac 29213899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 5791309 - 5791392
Alignment:
Q  170 agagggcaaagcccaaa-agaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaaca 252  Q
    ||||||||||||| ||| |||||  |||||| |||||||| || || ||| ||| ||||||||||||| |||||||||||||||    
T  5791309 agagggcaaagcctaaagagaaagaaaactaagaaattaaacggacgttcttagacatgcaagccccgaaaatatcatcaaaca 5791392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 3237829 - 3237897
Alignment:
Q  219 ctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaa 287  Q
    ||||| || |||||||| |||||||||| ||| | |||  ||||||||||| |||||||||||||||||    
T  3237829 ctaggaatacaagccccagaaatatcataaaaaaggagtcttcgaagctcactaggaggagtctccaaa 3237897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 45752642 - 45752691
Alignment:
Q  238 aaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaa 287  Q
    |||||||||||||||||||  || |||||||| ||||||||| |||||||    
T  45752642 aaatatcatcaaacatgaggctttgaagctcattaggaggagactccaaa 45752691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 163 - 515
Target Start/End: Original strand, 47597430 - 47597782
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| ||||||||| ||||||||    
T  47597430 gtacaaaagagggcaaagtccaagagaaaagaaactacgaaattaaccggacattcttaggcatgcaagcctcggaaatataatcaaacatcagctttcg 47597529  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||    
T  47597530 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacaaaaatgctaaaattagcaagccaatcggcacttctatttcctttatgccaa 47597629  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  47597630 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacaatgaactaaaataggcatattcccattaaacttgaacttgtcagaaatca 47597729  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47597730 tgtcgatcaatatcttcgagtcactttccacaataagatgatcaaaatgctcc 47597782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 163 - 402
Target Start/End: Complemental strand, 4228530 - 4228291
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||    
T  4228530 gtacaatagagggcaaagctcaaaagaaaagaaactacgaaattaaccggatattcttaggcatgcaagccccggaaatatcatcaaacatgagctttcg 4228431  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4228430 aagctcaataggaggagtctccaaaataatcaaattcaaataattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 4228331  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagct 402  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4228330 gtatggttgatttgcacatgccaatccattctcagcagct 4228291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 224 - 515
Target Start/End: Original strand, 43270694 - 43270982
Alignment:
Q  224 catgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaa 323  Q
    |||| ||||| | |||||||||| ||| ||||| |||  ||||| |||||||||||||||||||| | ||||||| |||| || |||| ||||| ||||     
T  43270694 catgtaagccacagaaatatcataaaaaatgagtttttaaagcttaataggaggagtctccaaaacagtcaaattaaaattatccacaaaaatgttaaag 43270793  T
Q  324 ttagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaa 423  Q
    |||||||| || ||  ||||| ||||| ||||||| ||| ||||||||||||||| |||| |||  ||| | |  |||||| ||||||||||||||||||    
T  43270794 ttagcaagtca-tc--cacttatattttcttcacgtcaaatatggttgatttgcaaatgctaattaatttttaatagcttcttgatacgatgaactaaaa 43270890  T
Q  424 taggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    |||| | ||| ||||||| |||||| | |||| ||||||||||||||||||||||  |||||||||  || ||||||||||| |||||||||    
T  43270891 tagggatatttccattaagcttgaaattgtcaaaaatcatgtcgatcaatatcttagagtcacttttaactataagatgatctaaatgctcc 43270982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 163 - 503
Target Start/End: Original strand, 34389644 - 34389985
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaact-acgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgag-cttt 260  Q
    |||||| ||||||||||||||||||||||| ||| | | |||  ||| |||||||||||||||||| |||||||||| | ||||||||| | ||  ||||    
T  34389644 gtacaagagagggcaaagcccaaaagaaaacaaaattaagaagctaatcgaacattcctaggcatgtaagccccggataaatcatcaaaaaggattcttt 34389743  T
Q  261 cgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcc 360  Q
     ||  ||||  |||||||| |||||| |  |  ||||| |||||||    | ||||||| |||||||| |||||||| ||||| |||||||||||||||     
T  34389744 tgac-ctcacaaggaggagactccaacactaaaaaattaaaatgatatgtaaaaatgcttaaattagcgagccaatcagcactcctatttccttcacgct 34389842  T
Q  361 aagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaat 460  Q
    |||||||||||| ||| |||| ||||  |||  |||||||||| | ||| || | |||||||| | | | ||||||||| |||||||| |  ||||||||    
T  34389843 aagtatggttgagttgaacattccaaatcatcttcagcagctttcggatccggtaaactaaaacaagaatattcccattgaacttgaaattatcagaaat 34389942  T
Q  461 catgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
    |||||||||||| |||||  | ||||||||||| |||||||||    
T  34389943 catgtcgatcaaaatctttgaatcactttccactataagatga 34389985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 313 - 503
Target Start/End: Original strand, 36894406 - 36894596
Alignment:
Q  313 aaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacg 412  Q
    ||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||||||| ||| |||| ||||  |||  |||||| ||||| ||| ||    
T  36894406 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggttgagttgaacattccaactcatcttcagcaacttccggatccg 36894505  T
Q  413 atgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcaagtcactttccacaataagatga 503  Q
     | |||||||| ||| | |||| |||| |||||||| |  | |||||||||||||||||| |||||  | ||||||||||| |||||||||    
T  36894506 gtaaactaaaacaggaatattcacattgaacttgaaattattagaaatcatgtcgatcaaaatctttgaatcactttccactataagatga 36894596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 1217407 - 1217218
Alignment:
Q  179 agcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggagga 278  Q
    |||||||| ||||  |||||| |||||||| || || |||||||||||||||||||||||||||||||||||||  ||  |  |||||||| ||||||||    
T  1217407 agcccaaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggagga 1217308  T
Q  279 gtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 368  Q
    ||||||| ||||   ||||  |||  || |   |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  1217307 gtctccagaatatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 1217218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 163 - 368
Target Start/End: Complemental strand, 44307789 - 44307583
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaa-ctacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttc 261  Q
    |||||| |||||||||||| ||||  |||||||| ||| |||||||| ||||| |||||||||||||||||||||  ||||||||||| ||  ||  |      
T  44307789 gtacaaaagagggcaaagcacaaagaaaaagaaaactaagaaattaaacgaacgttcctaggcatgcaagccccgataatatcatcaaccaaaagactct 44307690  T
Q  262 gaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca 361  Q
    |||||||| |||| |||||||||| ||||   ||||  | |  || ||  |||||||| ||||||||||||||||| |||||||| || |||||||||||    
T  44307689 gaagctcactagggggagtctccagaatatgaaaatctagaaaatccatcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgcca 44307590  T
Q  362 agtatgg 368  Q
    |||||||    
T  44307589 agtatgg 44307583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 368
Target Start/End: Original strand, 28945211 - 28945416
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    |||||| ||||||||||||| ||| ||||  |||||| |||||||| || || |||||||||||| ||| |||| |||||||||||||||  ||  || |    
T  28945211 gtacaaaagagggcaaagcctaaaggaaagaaaactaagaaattaaacggacgttcctaggcatgtaagtcccgaaaatatcatcaaacaaaagactttg 28945310  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    ||||||| ||||||||||||| | ||||   ||||  |||  || |   |||||||| ||||||||||||||||| |||||||| || ||||| ||||||    
T  28945311 aagctcactaggaggagtctctagaatatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaa 28945410  T
Q  363 gtatgg 368  Q
    ||||||    
T  28945411 gtatgg 28945416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 368
Target Start/End: Complemental strand, 1369682 - 1369493
Alignment:
Q  179 agcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggagga 278  Q
    |||||||| ||||  |||||| ||||||||  | || ||||||||||||||||  |||||||||||||||||||  ||  |  |||||||| ||||||||    
T  1369682 agcccaaaggaaagaaaactaagaaattaaatggacgttcctaggcatgcaagttccggaaatatcatcaaacaaaagactctgaagctcactaggagga 1369583  T
Q  279 gtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatgg 368  Q
    ||||| | ||||   ||||  | |  || |   |||||||| ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  1369582 gtctcaagaatatgaaaatctagaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgg 1369493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 386
Target Start/End: Original strand, 11896048 - 11896116
Alignment:
Q  318 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 386  Q
    ||||||||||| |||||||| ||   |||||||||||||||||| ||||||||||| || |||||||||    
T  11896048 ctaaaattagctagccaatctgctgatctatttccttcacgccatgtatggttgatatgaacatgccaa 11896116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 861329 - 861273
Alignment:
Q  194 aaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaa 250  Q
    |||||| ||| ||| ||||||| | |||| |||||||||||||||||||||||||||    
T  861329 aaactaagaagttagccgaacacttctagacatgcaagccccggaaatatcatcaaa 861273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 24246286 - 24246326
Alignment:
Q  210 cgaacattcctaggcatgcaagccccggaaatatcatcaaa 250  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  24246286 cgaacattcctagacatgcaagccccgaaaatatcatcaaa 24246326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 36858649 - 36858740
Alignment:
Q  163 gtacaatagagggc-aaagcccaaa-agaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaaca 252  Q
    |||||| ||||||| |||| ||||| |||||  |||||| ||||||||  | || |||||| ||||||||| ||||||||||||||||||||    
T  36858649 gtacaaaagagggccaaaggccaaagagaaagaaaactaagaaattaaaaggacgttcctacgcatgcaagtcccggaaatatcatcaaaca 36858740  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 15828312 - 15828385
Alignment:
Q  215 attcctaggcatgcaagccccggaaatatcatcaaacatgagctttcgaagctcaataggaggagtctccaaaa 288  Q
    ||||||||||||||| || || ||||||||||||||||   ||  | |||||||| ||||||||| ||||||||    
T  15828312 attcctaggcatgcacgctccagaaatatcatcaaacagtggcagttgaagctcattaggaggagactccaaaa 15828385  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 36894303 - 36894343
Alignment:
Q  210 cgaacattcctaggcatgcaagccccggaaatatcatcaaa 250  Q
    ||||||||||||||||||||||| ||||| | |||||||||    
T  36894303 cgaacattcctaggcatgcaagctccggataaatcatcaaa 36894343  T

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Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 163 - 515
Target Start/End: Original strand, 1222820 - 1223154
Alignment:
Q  163 gtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgaacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 262  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1222820 gtacaatagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattcctaggcatgcaagccccggaaatatcatcaaacatgagctttcg 1222919  T
Q  263 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1222920 aagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgcca- 1223018  T
Q  363 gtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 462  Q
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223019 -----------------atgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatca 1223101  T
Q  463 tgtcgatcaatatcttcaagtcactttccacaataagatgatcaaaatgctcc 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1223102 tgtcgatcaatatcttcgagtcactttccacaataagatgatcaaaatgctcc 1223154  T

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Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 897945 - 898042
Alignment:
Q  9 gtactatctagaacaagatacaacttcatgacaagactaaaaaagtaacagaagcgatacatatagagagaaattaaatagaaaaaccacagtccaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  897945 gtactatctagaacaagatacaacttcatgacaagactaaaaaagtaacagaaccaatacatatcgagagaaattaaatagaaaaaccacagtccaaa 898042  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 898059 - 898102
Alignment:
Q  104 aaaggaatagcacaaagtattgatattcatattacaactgattc 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  898059 aaaggaatagcacaaagtattgatattcatattacaactgattc 898102  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 20679026 - 20679066
Alignment:
Q  210 cgaacattcctaggcatgcaagccccggaaatatcatcaaa 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20679026 cgaacattcctaggcatgcaagccccggaaatatcatcaaa 20679066  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 367
Target Start/End: Complemental strand, 6262351 - 6262249
Alignment:
Q  265 gctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagt 364  Q
    ||||| |||||||  ||| ||||| ||  |||||| ||| |||||||| || ||| |||||| |||| ||||| ||||||||||| ||||| || |||||    
T  6262351 gctcactaggagggttcttcaaaacaacaaaattccaataattcacagtaaggctgaaattaacaagtcaatcagcacttctattgccttctcgtcaagt 6262252  T
Q  365 atg 367  Q
    |||    
T  6262251 atg 6262249  T

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Target: scaffold0003 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 254 - 508
Target Start/End: Complemental strand, 356172 - 355917
Alignment:
Q  254 gagctttcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttcct 353  Q
    ||||||| || | ||| |||||||| ||||||||| |||||||||||| |||| || | ||| |||||| ||||||||  |||| |||||| ||||| ||    
T  356172 gagcttttgatggtcactaggaggactctccaaaacaatcaaattcaattgatccataaaaacgctaaagttagcaagttaatcagcacttgtattttct 356073  T
Q  354 tcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgt 453  Q
    ||  | ||| ||| |||||||||||||||  ||| |||| |||||| |||||| ||| |||||||||||||||| | ||||| |||||||||||| | ||    
T  356072 tcgggtcaaatatagttgatttgcacatgttaattcattttcagcaacttcctaatatgatgaactaaaatagggatattcctattaaacttgaaattgt 355973  T
Q  454 cagaaatcatgtcgatcaatatcttca-agtcactttccacaataagatgatcaaa 508  Q
     | |||| ||||||||||||||||| | ||||| |||| || ||||||||||||||    
T  355972 gacaaataatgtcgatcaatatcttaagagtcattttctactataagatgatcaaa 355917  T

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Target: scaffold0736 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0736
Description:

Target: scaffold0736; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 6589 - 6520
Alignment:
Q  318 ctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaat 387  Q
    ||||| ||||| | |||||||||   |||||| |||||||||||||||||||| ||||  ||||||||||    
T  6589 ctaaagttagctaaccaatcggctgctctattgccttcacgccaagtatggttaatttaaacatgccaat 6520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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